Atomistry » Iron » PDB 1lrm-1m6m » 1lyk
Atomistry »
  Iron »
    PDB 1lrm-1m6m »
      1lyk »

Iron in PDB 1lyk: The Impact of the Physical and Chemical Enviroment on the Molecular Structure of Coprinus Cinereus Peroxidase

Enzymatic activity of The Impact of the Physical and Chemical Enviroment on the Molecular Structure of Coprinus Cinereus Peroxidase

All present enzymatic activity of The Impact of the Physical and Chemical Enviroment on the Molecular Structure of Coprinus Cinereus Peroxidase:
1.11.1.7;

Protein crystallography data

The structure of The Impact of the Physical and Chemical Enviroment on the Molecular Structure of Coprinus Cinereus Peroxidase, PDB code: 1lyk was solved by K.Houborg, P.Harris, J.F.W.Petersen, P.Rowland, J.-C.N.Poulsen, P.Schneider, J.Vind, S.Larsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.700, 128.410, 75.480, 90.00, 93.22, 90.00
R / Rfree (%) 17.9 / 23.5

Other elements in 1lyk:

The structure of The Impact of the Physical and Chemical Enviroment on the Molecular Structure of Coprinus Cinereus Peroxidase also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Calcium (Ca) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the The Impact of the Physical and Chemical Enviroment on the Molecular Structure of Coprinus Cinereus Peroxidase (pdb code 1lyk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The Impact of the Physical and Chemical Enviroment on the Molecular Structure of Coprinus Cinereus Peroxidase, PDB code: 1lyk:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1lyk

Go back to Iron Binding Sites List in 1lyk
Iron binding site 1 out of 2 in the The Impact of the Physical and Chemical Enviroment on the Molecular Structure of Coprinus Cinereus Peroxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Impact of the Physical and Chemical Enviroment on the Molecular Structure of Coprinus Cinereus Peroxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe344

b:21.4
occ:1.00
FE A:HEM344 0.0 21.4 1.0
NA A:HEM344 2.0 12.2 1.0
NB A:HEM344 2.0 12.8 1.0
ND A:HEM344 2.1 13.0 1.0
NC A:HEM344 2.1 12.2 1.0
NE2 A:HIS183 2.3 14.6 1.0
O A:HOH1011 2.8 18.7 1.0
C4A A:HEM344 2.9 13.1 1.0
C1A A:HEM344 3.0 13.9 1.0
C1B A:HEM344 3.0 12.0 1.0
C4B A:HEM344 3.0 12.4 1.0
C1C A:HEM344 3.1 12.3 1.0
C4D A:HEM344 3.1 14.2 1.0
C4C A:HEM344 3.1 10.8 1.0
C1D A:HEM344 3.1 14.0 1.0
CE1 A:HIS183 3.2 14.8 1.0
CHB A:HEM344 3.3 12.9 1.0
CD2 A:HIS183 3.4 14.8 1.0
CHC A:HEM344 3.4 10.3 1.0
CHA A:HEM344 3.4 14.8 1.0
CHD A:HEM344 3.5 12.1 1.0
C3A A:HEM344 4.2 13.5 1.0
C2A A:HEM344 4.2 13.4 1.0
C3B A:HEM344 4.2 12.0 1.0
C2B A:HEM344 4.3 10.5 1.0
C3D A:HEM344 4.3 15.1 1.0
C3C A:HEM344 4.3 14.6 1.0
C2C A:HEM344 4.3 12.2 1.0
C2D A:HEM344 4.4 13.9 1.0
ND1 A:HIS183 4.4 13.9 1.0
CG A:HIS183 4.5 15.3 1.0
CG A:ARG51 4.9 16.3 1.0
O A:HOH1029 4.9 19.5 1.0

Iron binding site 2 out of 2 in 1lyk

Go back to Iron Binding Sites List in 1lyk
Iron binding site 2 out of 2 in the The Impact of the Physical and Chemical Enviroment on the Molecular Structure of Coprinus Cinereus Peroxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Impact of the Physical and Chemical Enviroment on the Molecular Structure of Coprinus Cinereus Peroxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe344

b:18.8
occ:1.00
FE B:HEM344 0.0 18.8 1.0
NB B:HEM344 2.0 12.6 1.0
NC B:HEM344 2.0 16.3 1.0
ND B:HEM344 2.1 13.7 1.0
NA B:HEM344 2.1 14.3 1.0
NE2 B:HIS183 2.2 11.6 1.0
O B:HOH2011 2.7 15.6 1.0
C4B B:HEM344 3.0 11.3 1.0
C1B B:HEM344 3.0 10.4 1.0
C1C B:HEM344 3.0 12.8 1.0
C4A B:HEM344 3.1 12.6 1.0
CE1 B:HIS183 3.1 12.6 1.0
C1D B:HEM344 3.1 12.3 1.0
C4D B:HEM344 3.1 12.6 1.0
C4C B:HEM344 3.1 12.4 1.0
C1A B:HEM344 3.1 13.8 1.0
CD2 B:HIS183 3.3 13.7 1.0
CHC B:HEM344 3.4 13.5 1.0
CHB B:HEM344 3.4 12.4 1.0
CHD B:HEM344 3.4 11.5 1.0
CHA B:HEM344 3.5 14.7 1.0
C2B B:HEM344 4.3 11.2 1.0
C3B B:HEM344 4.3 10.6 1.0
ND1 B:HIS183 4.3 15.1 1.0
C3D B:HEM344 4.3 14.2 1.0
C2C B:HEM344 4.3 10.9 1.0
C2D B:HEM344 4.3 12.9 1.0
C3A B:HEM344 4.3 13.9 1.0
C2A B:HEM344 4.3 13.4 1.0
C3C B:HEM344 4.3 12.7 1.0
CG B:HIS183 4.4 15.2 1.0
O B:HOH2029 5.0 18.5 1.0
CG B:ARG51 5.0 18.4 1.0

Reference:

K.Houborg, P.Harris, J.Petersen, P.Rowland, J.C.Poulsen, P.Schneider, J.Vind, S.Larsen. Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase. Acta Crystallogr.,Sect.D V. 59 989 2003.
ISSN: ISSN 0907-4449
PubMed: 12777760
DOI: 10.1107/S0907444903006772
Page generated: Sat Aug 3 09:56:25 2024

Last articles

Zn in 1MC5
Zn in 1MFM
Zn in 1MA0
Zn in 1MED
Zn in 1MEA
Zn in 1MBX
Zn in 1MA3
Zn in 1M9O
Zn in 1M9R
Zn in 1M9Q
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy