Iron in PDB 1m1p: P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1
Protein crystallography data
The structure of P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1, PDB code: 1m1p
was solved by
D.Leys,
T.E.Meyer,
A.I.Tsapin,
K.H.Nealson,
M.A.Cusanovich,
J.J.Van Beeumen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
14.92 /
1.55
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
93.690,
34.005,
108.313,
90.00,
110.49,
90.00
|
R / Rfree (%)
|
17.3 /
21.1
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Iron atom in the P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1
(pdb code 1m1p). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 24 binding sites of Iron where determined in the
P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1, PDB code: 1m1p:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 24 in 1m1p
Go back to
Iron Binding Sites List in 1m1p
Iron binding site 1 out
of 24 in the P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe801
b:8.6
occ:1.00
|
FE
|
A:HEM801
|
0.0
|
8.6
|
1.0
|
NC
|
A:HEM801
|
2.0
|
7.4
|
1.0
|
ND
|
A:HEM801
|
2.0
|
8.6
|
1.0
|
NE2
|
A:HIS65
|
2.0
|
8.5
|
1.0
|
NA
|
A:HEM801
|
2.0
|
8.4
|
1.0
|
NE2
|
A:HIS19
|
2.0
|
8.6
|
1.0
|
NB
|
A:HEM801
|
2.1
|
7.6
|
1.0
|
CE1
|
A:HIS65
|
3.0
|
9.4
|
1.0
|
CE1
|
A:HIS19
|
3.0
|
9.1
|
1.0
|
C1D
|
A:HEM801
|
3.0
|
9.6
|
1.0
|
C1C
|
A:HEM801
|
3.0
|
9.5
|
1.0
|
C4C
|
A:HEM801
|
3.0
|
8.5
|
1.0
|
C4D
|
A:HEM801
|
3.0
|
10.4
|
1.0
|
C1A
|
A:HEM801
|
3.0
|
9.5
|
1.0
|
C4A
|
A:HEM801
|
3.1
|
8.2
|
1.0
|
CD2
|
A:HIS65
|
3.1
|
9.0
|
1.0
|
C1B
|
A:HEM801
|
3.1
|
8.4
|
1.0
|
C4B
|
A:HEM801
|
3.1
|
7.9
|
1.0
|
CD2
|
A:HIS19
|
3.1
|
7.8
|
1.0
|
CHD
|
A:HEM801
|
3.4
|
9.2
|
1.0
|
CHA
|
A:HEM801
|
3.4
|
10.4
|
1.0
|
CHC
|
A:HEM801
|
3.4
|
7.4
|
1.0
|
CHB
|
A:HEM801
|
3.4
|
8.8
|
1.0
|
ND1
|
A:HIS65
|
4.1
|
10.2
|
1.0
|
ND1
|
A:HIS19
|
4.1
|
7.4
|
1.0
|
CG
|
A:HIS65
|
4.2
|
10.0
|
1.0
|
CG
|
A:HIS19
|
4.2
|
8.0
|
1.0
|
C2C
|
A:HEM801
|
4.2
|
9.3
|
1.0
|
C2D
|
A:HEM801
|
4.3
|
11.2
|
1.0
|
C3D
|
A:HEM801
|
4.3
|
11.4
|
1.0
|
C2A
|
A:HEM801
|
4.3
|
11.9
|
1.0
|
C2B
|
A:HEM801
|
4.3
|
10.3
|
1.0
|
C3A
|
A:HEM801
|
4.3
|
9.3
|
1.0
|
C3C
|
A:HEM801
|
4.3
|
8.5
|
1.0
|
C3B
|
A:HEM801
|
4.3
|
10.2
|
1.0
|
|
Iron binding site 2 out
of 24 in 1m1p
Go back to
Iron Binding Sites List in 1m1p
Iron binding site 2 out
of 24 in the P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe804
b:12.8
occ:1.00
|
FE
|
A:HEM804
|
0.0
|
12.8
|
1.0
|
NE2
|
A:HIS52
|
2.0
|
9.0
|
1.0
|
NB
|
A:HEM804
|
2.0
|
12.2
|
1.0
|
NC
|
A:HEM804
|
2.0
|
12.6
|
1.0
|
NA
|
A:HEM804
|
2.0
|
12.4
|
1.0
|
NE2
|
A:HIS79
|
2.0
|
13.2
|
1.0
|
ND
|
A:HEM804
|
2.0
|
15.3
|
1.0
|
CE1
|
A:HIS52
|
3.0
|
11.1
|
1.0
|
CE1
|
A:HIS79
|
3.0
|
14.9
|
1.0
|
C4C
|
A:HEM804
|
3.0
|
12.5
|
1.0
|
CD2
|
A:HIS52
|
3.0
|
10.8
|
1.0
|
C1B
|
A:HEM804
|
3.1
|
13.0
|
1.0
|
C4D
|
A:HEM804
|
3.1
|
14.8
|
1.0
|
C4A
|
A:HEM804
|
3.1
|
12.1
|
1.0
|
C4B
|
A:HEM804
|
3.1
|
11.7
|
1.0
|
C1A
|
A:HEM804
|
3.1
|
13.0
|
1.0
|
C1C
|
A:HEM804
|
3.1
|
12.4
|
1.0
|
CD2
|
A:HIS79
|
3.1
|
13.2
|
1.0
|
C1D
|
A:HEM804
|
3.1
|
14.6
|
1.0
|
CHA
|
A:HEM804
|
3.4
|
12.2
|
1.0
|
CHB
|
A:HEM804
|
3.4
|
13.5
|
1.0
|
CHD
|
A:HEM804
|
3.4
|
13.2
|
1.0
|
CHC
|
A:HEM804
|
3.5
|
10.9
|
1.0
|
ND1
|
A:HIS52
|
4.1
|
10.9
|
1.0
|
ND1
|
A:HIS79
|
4.1
|
15.7
|
1.0
|
CG
|
A:HIS52
|
4.2
|
10.7
|
1.0
|
CG
|
A:HIS79
|
4.2
|
18.1
|
1.0
|
C3C
|
A:HEM804
|
4.3
|
12.9
|
1.0
|
C3B
|
A:HEM804
|
4.3
|
13.3
|
1.0
|
C2C
|
A:HEM804
|
4.3
|
13.4
|
1.0
|
C2B
|
A:HEM804
|
4.3
|
10.7
|
1.0
|
C2A
|
A:HEM804
|
4.3
|
13.9
|
1.0
|
C3A
|
A:HEM804
|
4.3
|
11.8
|
1.0
|
C3D
|
A:HEM804
|
4.3
|
15.8
|
1.0
|
C2D
|
A:HEM804
|
4.3
|
16.1
|
1.0
|
NH1
|
A:ARG83
|
4.7
|
17.2
|
1.0
|
CBC
|
A:HEM803
|
4.8
|
13.4
|
1.0
|
|
Iron binding site 3 out
of 24 in 1m1p
Go back to
Iron Binding Sites List in 1m1p
Iron binding site 3 out
of 24 in the P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe802
b:9.0
occ:1.00
|
FE
|
A:HEM802
|
0.0
|
9.0
|
1.0
|
NB
|
A:HEM802
|
2.0
|
7.9
|
1.0
|
NA
|
A:HEM802
|
2.0
|
8.5
|
1.0
|
NC
|
A:HEM802
|
2.0
|
8.4
|
1.0
|
ND
|
A:HEM802
|
2.0
|
7.3
|
1.0
|
NE2
|
A:HIS9
|
2.1
|
7.8
|
1.0
|
NE2
|
A:HIS39
|
2.1
|
8.7
|
1.0
|
CE1
|
A:HIS39
|
3.0
|
8.1
|
1.0
|
CE1
|
A:HIS9
|
3.0
|
8.6
|
1.0
|
C1D
|
A:HEM802
|
3.0
|
9.1
|
1.0
|
C1B
|
A:HEM802
|
3.0
|
9.1
|
1.0
|
C4D
|
A:HEM802
|
3.0
|
9.9
|
1.0
|
C1C
|
A:HEM802
|
3.0
|
6.0
|
1.0
|
C1A
|
A:HEM802
|
3.1
|
9.6
|
1.0
|
C4A
|
A:HEM802
|
3.1
|
9.7
|
1.0
|
C4B
|
A:HEM802
|
3.1
|
7.1
|
1.0
|
C4C
|
A:HEM802
|
3.1
|
9.1
|
1.0
|
CD2
|
A:HIS9
|
3.1
|
7.9
|
1.0
|
CD2
|
A:HIS39
|
3.1
|
8.9
|
1.0
|
CHA
|
A:HEM802
|
3.4
|
11.3
|
1.0
|
CHD
|
A:HEM802
|
3.4
|
9.1
|
1.0
|
CHB
|
A:HEM802
|
3.4
|
10.7
|
1.0
|
CHC
|
A:HEM802
|
3.5
|
6.6
|
1.0
|
ND1
|
A:HIS9
|
4.1
|
8.2
|
1.0
|
ND1
|
A:HIS39
|
4.1
|
10.0
|
1.0
|
CG
|
A:HIS9
|
4.2
|
7.8
|
1.0
|
CG
|
A:HIS39
|
4.2
|
7.3
|
1.0
|
C2B
|
A:HEM802
|
4.2
|
10.2
|
1.0
|
C2D
|
A:HEM802
|
4.3
|
10.8
|
1.0
|
C2C
|
A:HEM802
|
4.3
|
7.4
|
1.0
|
C3B
|
A:HEM802
|
4.3
|
9.1
|
1.0
|
C3C
|
A:HEM802
|
4.3
|
8.7
|
1.0
|
C3A
|
A:HEM802
|
4.3
|
10.5
|
1.0
|
C3D
|
A:HEM802
|
4.3
|
10.9
|
1.0
|
C2A
|
A:HEM802
|
4.3
|
9.8
|
1.0
|
|
Iron binding site 4 out
of 24 in 1m1p
Go back to
Iron Binding Sites List in 1m1p
Iron binding site 4 out
of 24 in the P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe803
b:10.3
occ:1.00
|
FE
|
A:HEM803
|
0.0
|
10.3
|
1.0
|
NC
|
A:HEM803
|
2.0
|
8.6
|
1.0
|
NA
|
A:HEM803
|
2.0
|
9.8
|
1.0
|
NB
|
A:HEM803
|
2.0
|
8.6
|
1.0
|
ND
|
A:HEM803
|
2.0
|
10.3
|
1.0
|
NE2
|
A:HIS62
|
2.1
|
10.5
|
1.0
|
NE2
|
A:HIS49
|
2.1
|
10.7
|
1.0
|
C4C
|
A:HEM803
|
3.0
|
10.3
|
1.0
|
C1C
|
A:HEM803
|
3.0
|
8.9
|
1.0
|
C4A
|
A:HEM803
|
3.0
|
10.7
|
1.0
|
CD2
|
A:HIS49
|
3.0
|
11.2
|
1.0
|
C1A
|
A:HEM803
|
3.1
|
12.1
|
1.0
|
C1B
|
A:HEM803
|
3.1
|
9.3
|
1.0
|
C1D
|
A:HEM803
|
3.1
|
10.9
|
1.0
|
C4B
|
A:HEM803
|
3.1
|
7.6
|
1.0
|
C4D
|
A:HEM803
|
3.1
|
10.2
|
1.0
|
CE1
|
A:HIS49
|
3.1
|
10.5
|
1.0
|
CD2
|
A:HIS62
|
3.1
|
8.8
|
1.0
|
CE1
|
A:HIS62
|
3.1
|
8.4
|
1.0
|
CHD
|
A:HEM803
|
3.4
|
11.4
|
1.0
|
CHC
|
A:HEM803
|
3.4
|
9.5
|
1.0
|
CHB
|
A:HEM803
|
3.4
|
9.2
|
1.0
|
CHA
|
A:HEM803
|
3.4
|
12.1
|
1.0
|
ND1
|
A:HIS49
|
4.2
|
11.4
|
1.0
|
CG
|
A:HIS49
|
4.2
|
10.2
|
1.0
|
ND1
|
A:HIS62
|
4.2
|
9.2
|
1.0
|
O
|
A:HOH1253
|
4.2
|
43.5
|
1.0
|
C3C
|
A:HEM803
|
4.2
|
10.3
|
1.0
|
CG
|
A:HIS62
|
4.2
|
9.0
|
1.0
|
C3A
|
A:HEM803
|
4.2
|
8.9
|
1.0
|
C2C
|
A:HEM803
|
4.2
|
10.0
|
1.0
|
C2A
|
A:HEM803
|
4.3
|
11.6
|
1.0
|
C2B
|
A:HEM803
|
4.3
|
8.7
|
1.0
|
C2D
|
A:HEM803
|
4.3
|
10.6
|
1.0
|
C3B
|
A:HEM803
|
4.3
|
9.1
|
1.0
|
C3D
|
A:HEM803
|
4.3
|
11.6
|
1.0
|
|
Iron binding site 5 out
of 24 in 1m1p
Go back to
Iron Binding Sites List in 1m1p
Iron binding site 5 out
of 24 in the P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe801
b:11.4
occ:1.00
|
FE
|
B:HEM801
|
0.0
|
11.4
|
1.0
|
NA
|
B:HEM801
|
2.0
|
11.4
|
1.0
|
ND
|
B:HEM801
|
2.0
|
10.4
|
1.0
|
NC
|
B:HEM801
|
2.0
|
11.7
|
1.0
|
NB
|
B:HEM801
|
2.0
|
9.9
|
1.0
|
NE2
|
B:HIS19
|
2.1
|
11.6
|
1.0
|
NE2
|
B:HIS65
|
2.1
|
12.5
|
1.0
|
CE1
|
B:HIS65
|
3.0
|
14.9
|
1.0
|
C1D
|
B:HEM801
|
3.0
|
11.1
|
1.0
|
C4A
|
B:HEM801
|
3.0
|
10.6
|
1.0
|
C4D
|
B:HEM801
|
3.0
|
13.3
|
1.0
|
C1B
|
B:HEM801
|
3.0
|
10.8
|
1.0
|
C4C
|
B:HEM801
|
3.0
|
9.1
|
1.0
|
CE1
|
B:HIS19
|
3.0
|
14.0
|
1.0
|
C1A
|
B:HEM801
|
3.0
|
12.4
|
1.0
|
C1C
|
B:HEM801
|
3.0
|
11.1
|
1.0
|
C4B
|
B:HEM801
|
3.1
|
11.8
|
1.0
|
CD2
|
B:HIS19
|
3.1
|
9.6
|
1.0
|
CD2
|
B:HIS65
|
3.1
|
13.7
|
1.0
|
CHD
|
B:HEM801
|
3.4
|
11.2
|
1.0
|
CHB
|
B:HEM801
|
3.4
|
12.7
|
1.0
|
CHA
|
B:HEM801
|
3.4
|
13.4
|
1.0
|
CHC
|
B:HEM801
|
3.4
|
11.7
|
1.0
|
ND1
|
B:HIS65
|
4.1
|
14.8
|
1.0
|
ND1
|
B:HIS19
|
4.2
|
11.4
|
1.0
|
CG
|
B:HIS19
|
4.2
|
9.8
|
1.0
|
CG
|
B:HIS65
|
4.2
|
14.8
|
1.0
|
C2B
|
B:HEM801
|
4.2
|
12.8
|
1.0
|
C2D
|
B:HEM801
|
4.2
|
14.4
|
1.0
|
C3D
|
B:HEM801
|
4.2
|
16.8
|
1.0
|
C3B
|
B:HEM801
|
4.3
|
14.1
|
1.0
|
C3C
|
B:HEM801
|
4.3
|
11.1
|
1.0
|
C2C
|
B:HEM801
|
4.3
|
10.6
|
1.0
|
C3A
|
B:HEM801
|
4.3
|
12.8
|
1.0
|
C2A
|
B:HEM801
|
4.3
|
14.9
|
1.0
|
|
Iron binding site 6 out
of 24 in 1m1p
Go back to
Iron Binding Sites List in 1m1p
Iron binding site 6 out
of 24 in the P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe804
b:14.1
occ:1.00
|
FE
|
B:HEM804
|
0.0
|
14.1
|
1.0
|
NC
|
B:HEM804
|
2.0
|
13.7
|
1.0
|
NA
|
B:HEM804
|
2.0
|
13.1
|
1.0
|
NB
|
B:HEM804
|
2.0
|
12.4
|
1.0
|
NE2
|
B:HIS52
|
2.0
|
12.6
|
1.0
|
ND
|
B:HEM804
|
2.0
|
15.9
|
1.0
|
NE2
|
B:HIS79
|
2.1
|
12.3
|
1.0
|
CE1
|
B:HIS52
|
3.0
|
15.4
|
1.0
|
CE1
|
B:HIS79
|
3.0
|
17.3
|
1.0
|
C1C
|
B:HEM804
|
3.0
|
12.4
|
1.0
|
C4A
|
B:HEM804
|
3.1
|
13.4
|
1.0
|
C4D
|
B:HEM804
|
3.1
|
15.6
|
1.0
|
C4B
|
B:HEM804
|
3.1
|
12.6
|
1.0
|
C1D
|
B:HEM804
|
3.1
|
15.6
|
1.0
|
C4C
|
B:HEM804
|
3.1
|
14.6
|
1.0
|
C1B
|
B:HEM804
|
3.1
|
13.2
|
1.0
|
C1A
|
B:HEM804
|
3.1
|
14.0
|
1.0
|
CD2
|
B:HIS52
|
3.1
|
14.7
|
1.0
|
CD2
|
B:HIS79
|
3.1
|
14.6
|
1.0
|
CHC
|
B:HEM804
|
3.4
|
12.2
|
1.0
|
CHA
|
B:HEM804
|
3.4
|
17.0
|
1.0
|
CHB
|
B:HEM804
|
3.4
|
13.4
|
1.0
|
CHD
|
B:HEM804
|
3.4
|
15.2
|
1.0
|
ND1
|
B:HIS52
|
4.1
|
13.7
|
1.0
|
ND1
|
B:HIS79
|
4.1
|
14.3
|
1.0
|
CG
|
B:HIS52
|
4.2
|
14.4
|
1.0
|
CG
|
B:HIS79
|
4.2
|
15.8
|
1.0
|
C3A
|
B:HEM804
|
4.3
|
13.3
|
1.0
|
C2C
|
B:HEM804
|
4.3
|
13.2
|
1.0
|
C3B
|
B:HEM804
|
4.3
|
13.6
|
1.0
|
C3C
|
B:HEM804
|
4.3
|
16.0
|
1.0
|
C2D
|
B:HEM804
|
4.3
|
18.6
|
1.0
|
C3D
|
B:HEM804
|
4.3
|
18.7
|
1.0
|
C2A
|
B:HEM804
|
4.3
|
14.6
|
1.0
|
C2B
|
B:HEM804
|
4.3
|
13.1
|
1.0
|
NH1
|
B:ARG83
|
4.7
|
18.1
|
1.0
|
CBC
|
B:HEM803
|
4.7
|
13.2
|
1.0
|
|
Iron binding site 7 out
of 24 in 1m1p
Go back to
Iron Binding Sites List in 1m1p
Iron binding site 7 out
of 24 in the P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe802
b:14.7
occ:1.00
|
FE
|
B:HEM802
|
0.0
|
14.7
|
1.0
|
NB
|
B:HEM802
|
2.0
|
11.7
|
1.0
|
NC
|
B:HEM802
|
2.0
|
15.6
|
1.0
|
ND
|
B:HEM802
|
2.0
|
15.4
|
1.0
|
NA
|
B:HEM802
|
2.0
|
15.8
|
1.0
|
NE2
|
B:HIS39
|
2.0
|
15.9
|
1.0
|
NE2
|
B:HIS9
|
2.1
|
15.2
|
1.0
|
CE1
|
B:HIS39
|
3.0
|
15.6
|
1.0
|
C4C
|
B:HEM802
|
3.0
|
16.9
|
1.0
|
C4B
|
B:HEM802
|
3.0
|
12.6
|
1.0
|
C1B
|
B:HEM802
|
3.0
|
13.2
|
1.0
|
C1D
|
B:HEM802
|
3.0
|
19.2
|
1.0
|
C4A
|
B:HEM802
|
3.0
|
15.4
|
1.0
|
CE1
|
B:HIS9
|
3.0
|
13.2
|
1.0
|
CD2
|
B:HIS9
|
3.1
|
12.1
|
1.0
|
C4D
|
B:HEM802
|
3.1
|
19.5
|
1.0
|
C1C
|
B:HEM802
|
3.1
|
15.7
|
1.0
|
C1A
|
B:HEM802
|
3.1
|
18.7
|
1.0
|
CD2
|
B:HIS39
|
3.1
|
14.0
|
1.0
|
CHD
|
B:HEM802
|
3.4
|
18.9
|
1.0
|
CHB
|
B:HEM802
|
3.4
|
14.1
|
1.0
|
CHA
|
B:HEM802
|
3.4
|
19.1
|
1.0
|
CHC
|
B:HEM802
|
3.4
|
13.2
|
1.0
|
ND1
|
B:HIS39
|
4.1
|
16.1
|
1.0
|
ND1
|
B:HIS9
|
4.2
|
14.6
|
1.0
|
CG
|
B:HIS9
|
4.2
|
14.6
|
1.0
|
CG
|
B:HIS39
|
4.2
|
14.1
|
1.0
|
C2B
|
B:HEM802
|
4.2
|
13.3
|
1.0
|
C3B
|
B:HEM802
|
4.2
|
12.3
|
1.0
|
C3C
|
B:HEM802
|
4.2
|
15.0
|
1.0
|
C2D
|
B:HEM802
|
4.3
|
21.6
|
1.0
|
C3A
|
B:HEM802
|
4.3
|
17.0
|
1.0
|
C2C
|
B:HEM802
|
4.3
|
14.5
|
1.0
|
C3D
|
B:HEM802
|
4.3
|
21.5
|
1.0
|
C2A
|
B:HEM802
|
4.3
|
19.0
|
1.0
|
|
Iron binding site 8 out
of 24 in 1m1p
Go back to
Iron Binding Sites List in 1m1p
Iron binding site 8 out
of 24 in the P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe803
b:13.6
occ:1.00
|
FE
|
B:HEM803
|
0.0
|
13.6
|
1.0
|
NC
|
B:HEM803
|
2.0
|
11.5
|
1.0
|
NA
|
B:HEM803
|
2.0
|
14.6
|
1.0
|
ND
|
B:HEM803
|
2.0
|
14.6
|
1.0
|
NB
|
B:HEM803
|
2.0
|
12.8
|
1.0
|
NE2
|
B:HIS62
|
2.0
|
14.9
|
1.0
|
NE2
|
B:HIS49
|
2.1
|
15.4
|
1.0
|
CE1
|
B:HIS62
|
3.0
|
12.4
|
1.0
|
C4A
|
B:HEM803
|
3.0
|
15.3
|
1.0
|
CD2
|
B:HIS49
|
3.0
|
13.9
|
1.0
|
C1C
|
B:HEM803
|
3.0
|
13.1
|
1.0
|
C1D
|
B:HEM803
|
3.0
|
15.0
|
1.0
|
C1B
|
B:HEM803
|
3.0
|
14.6
|
1.0
|
C4C
|
B:HEM803
|
3.0
|
13.2
|
1.0
|
C4D
|
B:HEM803
|
3.1
|
14.8
|
1.0
|
CD2
|
B:HIS62
|
3.1
|
11.0
|
1.0
|
C1A
|
B:HEM803
|
3.1
|
17.1
|
1.0
|
C4B
|
B:HEM803
|
3.1
|
12.1
|
1.0
|
CE1
|
B:HIS49
|
3.1
|
15.1
|
1.0
|
CHB
|
B:HEM803
|
3.4
|
15.1
|
1.0
|
CHD
|
B:HEM803
|
3.4
|
13.0
|
1.0
|
CHA
|
B:HEM803
|
3.4
|
16.9
|
1.0
|
CHC
|
B:HEM803
|
3.5
|
12.2
|
1.0
|
ND1
|
B:HIS62
|
4.1
|
12.8
|
1.0
|
ND1
|
B:HIS49
|
4.2
|
15.2
|
1.0
|
CG
|
B:HIS62
|
4.2
|
11.4
|
1.0
|
CG
|
B:HIS49
|
4.2
|
14.4
|
1.0
|
C3A
|
B:HEM803
|
4.3
|
15.6
|
1.0
|
C2B
|
B:HEM803
|
4.3
|
14.5
|
1.0
|
C3C
|
B:HEM803
|
4.3
|
14.3
|
1.0
|
C2C
|
B:HEM803
|
4.3
|
14.1
|
1.0
|
C2D
|
B:HEM803
|
4.3
|
17.0
|
1.0
|
C2A
|
B:HEM803
|
4.3
|
19.7
|
1.0
|
C3D
|
B:HEM803
|
4.3
|
17.0
|
1.0
|
C3B
|
B:HEM803
|
4.3
|
13.1
|
1.0
|
|
Iron binding site 9 out
of 24 in 1m1p
Go back to
Iron Binding Sites List in 1m1p
Iron binding site 9 out
of 24 in the P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe801
b:12.0
occ:1.00
|
FE
|
C:HEM801
|
0.0
|
12.0
|
1.0
|
NC
|
C:HEM801
|
2.0
|
10.6
|
1.0
|
NA
|
C:HEM801
|
2.0
|
11.6
|
1.0
|
ND
|
C:HEM801
|
2.0
|
12.3
|
1.0
|
NB
|
C:HEM801
|
2.0
|
12.4
|
1.0
|
NE2
|
C:HIS19
|
2.1
|
12.4
|
1.0
|
NE2
|
C:HIS65
|
2.1
|
11.2
|
1.0
|
CE1
|
C:HIS65
|
3.0
|
13.0
|
1.0
|
C1C
|
C:HEM801
|
3.0
|
11.2
|
1.0
|
C4A
|
C:HEM801
|
3.0
|
14.5
|
1.0
|
C4D
|
C:HEM801
|
3.0
|
14.2
|
1.0
|
CE1
|
C:HIS19
|
3.0
|
12.9
|
1.0
|
C4C
|
C:HEM801
|
3.0
|
11.4
|
1.0
|
C4B
|
C:HEM801
|
3.0
|
11.4
|
1.0
|
C1A
|
C:HEM801
|
3.0
|
14.9
|
1.0
|
C1B
|
C:HEM801
|
3.0
|
13.1
|
1.0
|
C1D
|
C:HEM801
|
3.1
|
11.5
|
1.0
|
CD2
|
C:HIS19
|
3.1
|
10.1
|
1.0
|
CD2
|
C:HIS65
|
3.1
|
13.6
|
1.0
|
CHB
|
C:HEM801
|
3.4
|
14.6
|
1.0
|
CHC
|
C:HEM801
|
3.4
|
11.3
|
1.0
|
CHA
|
C:HEM801
|
3.4
|
14.4
|
1.0
|
CHD
|
C:HEM801
|
3.4
|
11.5
|
1.0
|
ND1
|
C:HIS65
|
4.1
|
13.5
|
1.0
|
ND1
|
C:HIS19
|
4.2
|
12.2
|
1.0
|
CG
|
C:HIS65
|
4.2
|
13.1
|
1.0
|
CG
|
C:HIS19
|
4.2
|
11.6
|
1.0
|
C2B
|
C:HEM801
|
4.2
|
15.7
|
1.0
|
C3C
|
C:HEM801
|
4.2
|
12.6
|
1.0
|
C3A
|
C:HEM801
|
4.2
|
13.8
|
1.0
|
C2C
|
C:HEM801
|
4.2
|
12.2
|
1.0
|
C3B
|
C:HEM801
|
4.2
|
14.0
|
1.0
|
C2A
|
C:HEM801
|
4.3
|
16.2
|
1.0
|
C3D
|
C:HEM801
|
4.3
|
17.2
|
1.0
|
C2D
|
C:HEM801
|
4.3
|
14.6
|
1.0
|
|
Iron binding site 10 out
of 24 in 1m1p
Go back to
Iron Binding Sites List in 1m1p
Iron binding site 10 out
of 24 in the P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of P21 Crystal Structure of the Tetraheme Cytochrome C3 From Shewanella Oneidensis MR1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe804
b:16.3
occ:1.00
|
FE
|
C:HEM804
|
0.0
|
16.3
|
1.0
|
NC
|
C:HEM804
|
2.0
|
17.8
|
1.0
|
NA
|
C:HEM804
|
2.0
|
17.8
|
1.0
|
NB
|
C:HEM804
|
2.0
|
14.5
|
1.0
|
NE2
|
C:HIS52
|
2.0
|
11.9
|
1.0
|
ND
|
C:HEM804
|
2.0
|
17.5
|
1.0
|
NE2
|
C:HIS79
|
2.1
|
14.4
|
1.0
|
CE1
|
C:HIS52
|
3.0
|
15.1
|
1.0
|
C1B
|
C:HEM804
|
3.0
|
14.7
|
1.0
|
CE1
|
C:HIS79
|
3.0
|
19.0
|
1.0
|
C1D
|
C:HEM804
|
3.0
|
18.7
|
1.0
|
C1A
|
C:HEM804
|
3.0
|
16.7
|
1.0
|
C4A
|
C:HEM804
|
3.0
|
15.6
|
1.0
|
C4C
|
C:HEM804
|
3.0
|
14.8
|
1.0
|
C1C
|
C:HEM804
|
3.1
|
14.4
|
1.0
|
C4B
|
C:HEM804
|
3.1
|
15.2
|
1.0
|
C4D
|
C:HEM804
|
3.1
|
19.6
|
1.0
|
CD2
|
C:HIS52
|
3.1
|
17.4
|
1.0
|
CD2
|
C:HIS79
|
3.1
|
18.2
|
1.0
|
CHD
|
C:HEM804
|
3.4
|
14.7
|
1.0
|
CHB
|
C:HEM804
|
3.4
|
15.2
|
1.0
|
CHA
|
C:HEM804
|
3.4
|
18.2
|
1.0
|
CHC
|
C:HEM804
|
3.4
|
14.9
|
1.0
|
ND1
|
C:HIS52
|
4.1
|
15.4
|
1.0
|
ND1
|
C:HIS79
|
4.2
|
18.4
|
1.0
|
CG
|
C:HIS52
|
4.2
|
15.7
|
1.0
|
CG
|
C:HIS79
|
4.2
|
18.1
|
1.0
|
C2B
|
C:HEM804
|
4.3
|
14.1
|
1.0
|
C3B
|
C:HEM804
|
4.3
|
15.7
|
1.0
|
C2A
|
C:HEM804
|
4.3
|
17.6
|
1.0
|
C2D
|
C:HEM804
|
4.3
|
20.2
|
1.0
|
C2C
|
C:HEM804
|
4.3
|
15.7
|
1.0
|
C3A
|
C:HEM804
|
4.3
|
19.0
|
1.0
|
C3C
|
C:HEM804
|
4.3
|
16.1
|
1.0
|
C3D
|
C:HEM804
|
4.3
|
21.4
|
1.0
|
NH1
|
C:ARG83
|
4.7
|
20.4
|
1.0
|
CBC
|
C:HEM803
|
4.7
|
13.5
|
1.0
|
|
Reference:
D.Leys,
T.E.Meyer,
A.I.Tsapin,
K.H.Nealson,
M.A.Cusanovich,
J.J.Van Beeumen.
Crystal Structures at Atomic Resolution Reveal the Novel Concept of 'Electron-Harvesting' As A Role For the Small Tetraheme Cytochrome C J.Biol.Chem. V. 277 35703 2002.
ISSN: ISSN 0021-9258
PubMed: 12080059
DOI: 10.1074/JBC.M203866200
Page generated: Sat Aug 3 09:56:48 2024
|