Atomistry » Iron » PDB 1lrm-1m6m » 1m34
Atomistry »
  Iron »
    PDB 1lrm-1m6m »
      1m34 »

Iron in PDB 1m34: Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate

Enzymatic activity of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate

All present enzymatic activity of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate:
1.18.6.1;

Protein crystallography data

The structure of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate, PDB code: 1m34 was solved by B.Schmid, O.Einsle, H.-J.Chiu, A.Willing, M.Yoshida, J.B.Howard, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 326.100, 75.800, 312.200, 90.00, 102.60, 90.00
R / Rfree (%) 20 / 23.6

Other elements in 1m34:

The structure of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate also contains other interesting chemical elements:

Fluorine (F) 32 atoms
Molybdenum (Mo) 4 atoms
Magnesium (Mg) 8 atoms
Aluminium (Al) 8 atoms
Calcium (Ca) 4 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 76;

Binding sites:

The binding sites of Iron atom in the Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate (pdb code 1m34). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 76 binding sites of Iron where determined in the Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate, PDB code: 1m34:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 76 in 1m34

Go back to Iron Binding Sites List in 1m34
Iron binding site 1 out of 76 in the Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe2096

b:21.9
occ:1.00
FE1 A:CFM2096 0.0 21.9 1.0
S4A A:CFM2096 2.3 22.6 1.0
SG A:CYS275 2.3 19.7 1.0
S1A A:CFM2096 2.3 20.9 1.0
S2A A:CFM2096 2.3 18.7 1.0
FE4 A:CFM2096 2.7 24.3 1.0
FE2 A:CFM2096 2.7 21.5 1.0
FE3 A:CFM2096 2.8 22.7 1.0
CB A:CYS275 3.3 25.7 1.0
CB A:LEU358 4.1 25.8 1.0
OG A:SER278 4.4 21.8 1.0
CB A:SER278 4.5 22.0 1.0
CE2 A:TYR229 4.5 22.8 1.0
CA A:CYS275 4.5 26.7 1.0
CD2 A:LEU358 4.8 28.4 1.0
S2B A:CFM2096 4.9 20.1 1.0
S5 A:CFM2096 4.9 18.8 1.0
FE7 A:CFM2096 4.9 20.4 1.0
N A:SER278 4.9 25.3 1.0
S3A A:CFM2096 4.9 23.8 1.0
CD2 A:TYR229 4.9 25.6 1.0
N A:LEU358 4.9 23.4 1.0
O A:HOH2221 5.0 47.0 1.0
FE5 A:CFM2096 5.0 25.5 1.0
FE6 A:CFM2096 5.0 21.1 1.0

Iron binding site 2 out of 76 in 1m34

Go back to Iron Binding Sites List in 1m34
Iron binding site 2 out of 76 in the Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe2096

b:21.5
occ:1.00
FE2 A:CFM2096 0.0 21.5 1.0
S2B A:CFM2096 2.3 20.1 1.0
S1A A:CFM2096 2.3 20.9 1.0
S2A A:CFM2096 2.3 18.7 1.0
FE6 A:CFM2096 2.5 21.1 1.0
FE3 A:CFM2096 2.6 22.7 1.0
FE1 A:CFM2096 2.7 21.9 1.0
FE4 A:CFM2096 2.7 24.3 1.0
FE7 A:CFM2096 3.6 20.4 1.0
FE5 A:CFM2096 3.6 25.5 1.0
S4A A:CFM2096 3.8 22.6 1.0
S3B A:CFM2096 4.1 23.4 1.0
CZ A:PHE381 4.2 19.0 1.0
NE2 A:HIS195 4.2 27.5 1.0
S1B A:CFM2096 4.3 24.5 1.0
CE1 A:HIS195 4.3 25.3 1.0
CE1 A:PHE381 4.6 22.1 1.0
S5 A:CFM2096 4.6 18.8 1.0
S3A A:CFM2096 4.6 23.8 1.0
SG A:CYS275 4.7 19.7 1.0
CG2 A:VAL70 4.9 27.0 1.0
CB A:VAL70 5.0 28.7 1.0
CG1 A:VAL70 5.0 24.6 1.0

Iron binding site 3 out of 76 in 1m34

Go back to Iron Binding Sites List in 1m34
Iron binding site 3 out of 76 in the Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe2096

b:22.7
occ:1.00
FE3 A:CFM2096 0.0 22.7 1.0
S5 A:CFM2096 2.2 18.8 1.0
S2A A:CFM2096 2.3 18.7 1.0
S4A A:CFM2096 2.3 22.6 1.0
FE7 A:CFM2096 2.3 20.4 1.0
FE2 A:CFM2096 2.6 21.5 1.0
FE4 A:CFM2096 2.7 24.3 1.0
FE1 A:CFM2096 2.8 21.9 1.0
FE6 A:CFM2096 3.5 21.1 1.0
FE5 A:CFM2096 3.6 25.5 1.0
S1A A:CFM2096 3.9 20.9 1.0
S3B A:CFM2096 4.0 23.4 1.0
NH2 A:ARG96 4.1 29.0 1.0
O A:HOH2099 4.1 17.7 1.0
CD2 A:TYR229 4.1 25.6 1.0
S4B A:CFM2096 4.2 25.4 1.0
S2B A:CFM2096 4.5 20.1 1.0
CE2 A:TYR229 4.5 22.8 1.0
S3A A:CFM2096 4.5 23.8 1.0
SG A:CYS275 4.9 19.7 1.0
MO1 A:CFM2096 5.0 26.6 1.0

Iron binding site 4 out of 76 in 1m34

Go back to Iron Binding Sites List in 1m34
Iron binding site 4 out of 76 in the Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe2096

b:24.3
occ:1.00
FE4 A:CFM2096 0.0 24.3 1.0
S4A A:CFM2096 2.3 22.6 1.0
S1A A:CFM2096 2.3 20.9 1.0
S3A A:CFM2096 2.3 23.8 1.0
FE5 A:CFM2096 2.6 25.5 1.0
FE1 A:CFM2096 2.7 21.9 1.0
FE3 A:CFM2096 2.7 22.7 1.0
FE2 A:CFM2096 2.7 21.5 1.0
FE7 A:CFM2096 3.7 20.4 1.0
FE6 A:CFM2096 3.7 21.1 1.0
S2A A:CFM2096 3.9 18.7 1.0
N A:LEU358 3.9 23.4 1.0
CB A:LEU358 4.0 25.8 1.0
N A:GLY357 4.0 24.2 1.0
S4B A:CFM2096 4.3 25.4 1.0
S1B A:CFM2096 4.4 24.5 1.0
CA A:LEU358 4.5 25.0 1.0
S2B A:CFM2096 4.6 20.1 1.0
C A:GLY357 4.6 24.8 1.0
S5 A:CFM2096 4.6 18.8 1.0
N A:ARG359 4.6 26.3 1.0
SG A:CYS275 4.7 19.7 1.0
CA A:GLY357 4.7 24.0 1.0
CG A:ARG359 4.8 28.0 1.0
CA A:GLY356 4.9 22.6 1.0
C A:GLY356 5.0 24.2 1.0

Iron binding site 5 out of 76 in 1m34

Go back to Iron Binding Sites List in 1m34
Iron binding site 5 out of 76 in the Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe2096

b:25.5
occ:1.00
FE5 A:CFM2096 0.0 25.5 1.0
S3A A:CFM2096 2.3 23.8 1.0
S4B A:CFM2096 2.3 25.4 1.0
S1B A:CFM2096 2.3 24.5 1.0
FE6 A:CFM2096 2.5 21.1 1.0
FE4 A:CFM2096 2.6 24.3 1.0
FE7 A:CFM2096 2.7 20.4 1.0
MO1 A:CFM2096 2.9 26.6 1.0
FE3 A:CFM2096 3.6 22.7 1.0
FE2 A:CFM2096 3.6 21.5 1.0
S3B A:CFM2096 3.8 23.4 1.0
ND1 A:HIS442 4.0 25.3 1.0
N A:GLY356 4.1 23.6 1.0
CA A:GLY356 4.1 22.6 1.0
S1A A:CFM2096 4.2 20.9 1.0
CG2 A:ILE355 4.3 21.6 1.0
S4A A:CFM2096 4.3 22.6 1.0
S2B A:CFM2096 4.4 20.1 1.0
S5 A:CFM2096 4.6 18.8 1.0
CE1 A:HIS442 4.6 26.9 1.0
N A:GLY357 4.7 24.2 1.0
CD A:ARG359 4.9 26.8 1.0
FE1 A:CFM2096 5.0 21.9 1.0
CZ A:PHE381 5.0 19.0 1.0

Iron binding site 6 out of 76 in 1m34

Go back to Iron Binding Sites List in 1m34
Iron binding site 6 out of 76 in the Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe2096

b:21.1
occ:1.00
FE6 A:CFM2096 0.0 21.1 1.0
S3B A:CFM2096 2.2 23.4 1.0
S2B A:CFM2096 2.3 20.1 1.0
S1B A:CFM2096 2.3 24.5 1.0
FE2 A:CFM2096 2.5 21.5 1.0
FE5 A:CFM2096 2.5 25.5 1.0
FE7 A:CFM2096 2.6 20.4 1.0
MO1 A:CFM2096 2.7 26.6 1.0
FE3 A:CFM2096 3.5 22.7 1.0
FE4 A:CFM2096 3.7 24.3 1.0
S4B A:CFM2096 3.7 25.4 1.0
CZ A:PHE381 4.1 19.0 1.0
S1A A:CFM2096 4.2 20.9 1.0
S2A A:CFM2096 4.3 18.7 1.0
O1 A:HCA2094 4.4 23.9 1.0
S3A A:CFM2096 4.5 23.8 1.0
O7 A:HCA2094 4.6 24.9 1.0
CG1 A:VAL70 4.6 24.6 1.0
S5 A:CFM2096 4.6 18.8 1.0
CE2 A:PHE381 4.6 21.9 1.0
FE1 A:CFM2096 5.0 21.9 1.0

Iron binding site 7 out of 76 in 1m34

Go back to Iron Binding Sites List in 1m34
Iron binding site 7 out of 76 in the Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe2096

b:20.4
occ:1.00
FE7 A:CFM2096 0.0 20.4 1.0
S5 A:CFM2096 2.2 18.8 1.0
S3B A:CFM2096 2.3 23.4 1.0
FE3 A:CFM2096 2.3 22.7 1.0
S4B A:CFM2096 2.3 25.4 1.0
FE6 A:CFM2096 2.6 21.1 1.0
FE5 A:CFM2096 2.7 25.5 1.0
MO1 A:CFM2096 2.9 26.6 1.0
FE2 A:CFM2096 3.6 21.5 1.0
FE4 A:CFM2096 3.7 24.3 1.0
O A:HOH2097 3.8 14.2 1.0
S1B A:CFM2096 4.0 24.5 1.0
NE A:ARG96 4.0 27.4 1.0
S2A A:CFM2096 4.1 18.7 1.0
S4A A:CFM2096 4.2 22.6 1.0
NH2 A:ARG96 4.2 29.0 1.0
O5 A:HCA2094 4.4 26.1 1.0
S2B A:CFM2096 4.5 20.1 1.0
S3A A:CFM2096 4.5 23.8 1.0
CZ A:ARG96 4.6 29.1 1.0
NH2 A:ARG359 4.8 26.1 1.0
CZ A:ARG359 4.9 26.5 1.0
FE1 A:CFM2096 4.9 21.9 1.0
CD A:ARG96 5.0 26.0 1.0

Iron binding site 8 out of 76 in 1m34

Go back to Iron Binding Sites List in 1m34
Iron binding site 8 out of 76 in the Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe2098

b:23.5
occ:1.00
FE1 B:CLF2098 0.0 23.5 1.0
S3A B:CLF2098 2.2 23.6 1.0
S2A B:CLF2098 2.3 21.4 1.0
SG B:CYS95 2.3 18.3 1.0
S1 B:CLF2098 2.3 22.6 1.0
FE2 B:CLF2098 2.6 21.9 1.0
FE4 B:CLF2098 2.7 23.2 1.0
FE3 B:CLF2098 2.8 22.1 1.0
FE8 B:CLF2098 2.9 21.8 1.0
N B:CYS95 3.3 20.0 1.0
CA B:CYS95 3.6 20.1 1.0
CB B:CYS95 3.7 17.7 1.0
OG B:SER92 3.8 36.1 1.0
S4A B:CLF2098 3.8 22.7 1.0
FE5 B:CLF2098 3.9 26.3 1.0
C B:GLY94 3.9 20.1 1.0
S4B B:CLF2098 3.9 23.7 1.0
CA B:GLY94 4.4 19.1 1.0
SG A:CYS154 4.5 23.4 1.0
SG A:CYS88 4.6 23.3 1.0
O B:GLY94 4.6 21.4 1.0
FE6 B:CLF2098 4.7 27.2 1.0
CB B:SER92 4.7 30.9 1.0
SG A:CYS62 4.8 23.1 1.0
N B:GLY94 4.8 21.5 1.0
O B:SER92 4.9 27.4 1.0

Iron binding site 9 out of 76 in 1m34

Go back to Iron Binding Sites List in 1m34
Iron binding site 9 out of 76 in the Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe2098

b:21.9
occ:1.00
FE2 B:CLF2098 0.0 21.9 1.0
S4A B:CLF2098 2.3 22.7 1.0
SG A:CYS154 2.3 23.4 1.0
S1 B:CLF2098 2.3 22.6 1.0
S2A B:CLF2098 2.3 21.4 1.0
FE1 B:CLF2098 2.6 23.5 1.0
FE4 B:CLF2098 2.7 23.2 1.0
FE3 B:CLF2098 2.8 22.1 1.0
CB A:CYS154 3.7 20.1 1.0
CA A:GLY185 3.7 26.7 1.0
S3A B:CLF2098 3.7 23.6 1.0
N A:CYS154 3.8 19.0 1.0
OG B:SER92 3.9 36.1 1.0
N A:GLY185 4.1 27.0 1.0
CA A:CYS154 4.2 19.8 1.0
SG B:CYS95 4.5 18.3 1.0
FE8 B:CLF2098 4.6 21.8 1.0
FE5 B:CLF2098 4.6 26.3 1.0
C A:GLY185 4.7 27.2 1.0
SG A:CYS88 4.7 23.3 1.0
CB B:SER92 4.7 30.9 1.0
N A:PHE186 4.9 26.9 1.0
SG A:CYS62 4.9 23.1 1.0
C A:GLU153 4.9 20.0 1.0

Iron binding site 10 out of 76 in 1m34

Go back to Iron Binding Sites List in 1m34
Iron binding site 10 out of 76 in the Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Nitrogenase Complex From Azotobacter Vinelandii Stabilized By Adp- Tetrafluoroaluminate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe2098

b:22.1
occ:1.00
FE3 B:CLF2098 0.0 22.1 1.0
S3A B:CLF2098 2.3 23.6 1.0
SG A:CYS62 2.3 23.1 1.0
S2A B:CLF2098 2.3 21.4 1.0
S4A B:CLF2098 2.3 22.7 1.0
FE1 B:CLF2098 2.8 23.5 1.0
FE2 B:CLF2098 2.8 21.9 1.0
FE4 B:CLF2098 2.8 23.2 1.0
CB A:CYS62 3.2 23.8 1.0
CA A:GLY185 3.8 26.7 1.0
CB A:TYR64 4.0 22.1 1.0
S1 B:CLF2098 4.1 22.6 1.0
CA B:GLY94 4.2 19.1 1.0
C B:GLY94 4.4 20.1 1.0
CD2 A:TYR64 4.6 21.2 1.0
CA A:CYS62 4.6 24.2 1.0
N B:CYS95 4.6 20.0 1.0
CG A:TYR64 4.6 22.1 1.0
N A:GLY185 4.7 27.0 1.0
O B:HOH2336 4.7 26.8 1.0
C A:GLY185 4.9 27.2 1.0
SG A:CYS88 4.9 23.3 1.0
SG A:CYS154 4.9 23.4 1.0
N A:TYR64 4.9 23.6 1.0
O B:GLY94 4.9 21.4 1.0
CE2 B:TYR98 4.9 22.1 1.0
SG B:CYS95 4.9 18.3 1.0
N B:GLY94 4.9 21.5 1.0

Reference:

B.Schmid, O.Einsle, H.-J.Chiu, A.Willing, M.Yoshida, J.B.Howard, D.C.Rees. Biochemical and Structural Characterization of the Crosslinked Complex of Nitrogenase: Comparison to the Adp-ALF4 Stabilized Structure Biochemistry V. 41 15557 2002.
ISSN: ISSN 0006-2960
PubMed: 12501184
DOI: 10.1021/BI026642B
Page generated: Sat Aug 3 10:00:46 2024

Last articles

Zn in 1MC5
Zn in 1MFM
Zn in 1MA0
Zn in 1MED
Zn in 1MEA
Zn in 1MBX
Zn in 1MA3
Zn in 1M9O
Zn in 1M9R
Zn in 1M9Q
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy