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Iron in PDB 1m70: Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri

Protein crystallography data

The structure of Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri, PDB code: 1m70 was solved by A.Noergaard, P.Harris, S.Larsen, H.E.M.Christensen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.25
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 74.960, 57.640, 84.410, 90.00, 104.23, 90.00
R / Rfree (%) 15.5 / 20.2

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri (pdb code 1m70). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri, PDB code: 1m70:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 1m70

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Iron binding site 1 out of 8 in the Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe199

b:12.1
occ:1.00
FE A:HEC199 0.0 12.1 1.0
NB A:HEC199 2.0 13.4 1.0
NE2 A:HIS18 2.0 12.6 1.0
NC A:HEC199 2.0 12.9 1.0
NA A:HEC199 2.0 12.7 1.0
ND A:HEC199 2.0 12.8 1.0
SD A:MET66 2.4 14.6 1.0
C1B A:HEC199 3.0 13.2 1.0
CE1 A:HIS18 3.0 12.1 1.0
CD2 A:HIS18 3.0 12.8 1.0
C4A A:HEC199 3.0 13.2 1.0
C4B A:HEC199 3.0 13.8 1.0
C4C A:HEC199 3.0 13.1 1.0
C1C A:HEC199 3.0 13.4 1.0
C1A A:HEC199 3.0 12.6 1.0
C1D A:HEC199 3.0 13.5 1.0
C4D A:HEC199 3.1 12.3 1.0
CHC A:HEC199 3.4 12.6 1.0
CHB A:HEC199 3.4 13.4 1.0
CHD A:HEC199 3.4 13.4 1.0
CE A:MET66 3.4 16.2 1.0
CHA A:HEC199 3.4 12.0 1.0
CG A:MET66 3.4 15.1 1.0
ND1 A:HIS18 4.1 13.2 1.0
CG A:HIS18 4.2 12.8 1.0
C3B A:HEC199 4.2 14.2 1.0
C2C A:HEC199 4.2 13.8 1.0
C2B A:HEC199 4.3 12.9 1.0
C3D A:HEC199 4.3 12.9 1.0
C3A A:HEC199 4.3 11.5 1.0
C2D A:HEC199 4.3 13.7 1.0
C2A A:HEC199 4.3 11.9 1.0
C3C A:HEC199 4.3 13.8 1.0
CB A:MET66 4.9 15.8 1.0

Iron binding site 2 out of 8 in 1m70

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Iron binding site 2 out of 8 in the Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe200

b:11.3
occ:1.00
FE A:HEC200 0.0 11.3 1.0
NE2 A:HIS123 2.0 11.8 1.0
NC A:HEC200 2.0 13.1 1.0
NB A:HEC200 2.0 11.5 1.0
ND A:HEC200 2.0 11.9 1.0
NA A:HEC200 2.0 11.7 1.0
SD A:MET167 2.3 12.6 1.0
CE1 A:HIS123 3.0 11.9 1.0
C4C A:HEC200 3.0 13.3 1.0
C1C A:HEC200 3.0 12.5 1.0
C1B A:HEC200 3.0 11.6 1.0
CD2 A:HIS123 3.0 12.4 1.0
C1D A:HEC200 3.0 12.9 1.0
C4A A:HEC200 3.0 11.3 1.0
C4B A:HEC200 3.1 11.7 1.0
C4D A:HEC200 3.1 11.9 1.0
C1A A:HEC200 3.1 12.4 1.0
CE A:MET167 3.4 13.4 1.0
CHD A:HEC200 3.4 13.8 1.0
CHC A:HEC200 3.4 12.0 1.0
CG A:MET167 3.4 12.9 1.0
CHB A:HEC200 3.4 11.7 1.0
CHA A:HEC200 3.4 12.3 1.0
ND1 A:HIS123 4.1 13.9 1.0
CG A:HIS123 4.2 13.5 1.0
C3C A:HEC200 4.2 12.9 1.0
C2C A:HEC200 4.2 12.9 1.0
C3A A:HEC200 4.3 11.6 1.0
C2D A:HEC200 4.3 12.9 1.0
C3B A:HEC200 4.3 11.5 1.0
C3D A:HEC200 4.3 13.4 1.0
C2A A:HEC200 4.3 12.2 1.0
C2B A:HEC200 4.3 11.9 1.0
CB A:MET167 4.8 12.8 1.0

Iron binding site 3 out of 8 in 1m70

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Iron binding site 3 out of 8 in the Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe199

b:13.3
occ:1.00
FE B:HEC199 0.0 13.3 1.0
NB B:HEC199 1.9 13.8 1.0
NC B:HEC199 2.0 13.8 1.0
NE2 B:HIS18 2.0 13.3 1.0
NA B:HEC199 2.0 13.2 1.0
ND B:HEC199 2.0 13.2 1.0
SD B:MET66 2.3 15.5 1.0
CE1 B:HIS18 3.0 13.5 1.0
C1B B:HEC199 3.0 14.5 1.0
CD2 B:HIS18 3.0 14.0 1.0
C1C B:HEC199 3.0 13.3 1.0
C4C B:HEC199 3.0 14.5 1.0
C4B B:HEC199 3.0 13.9 1.0
C4A B:HEC199 3.0 13.8 1.0
C1D B:HEC199 3.0 13.1 1.0
C1A B:HEC199 3.0 13.2 1.0
C4D B:HEC199 3.1 13.4 1.0
CHC B:HEC199 3.4 14.7 1.0
CE B:MET66 3.4 14.9 1.0
CHB B:HEC199 3.4 14.1 1.0
CHD B:HEC199 3.4 14.2 1.0
CHA B:HEC199 3.4 14.1 1.0
CG B:MET66 3.4 16.2 1.0
ND1 B:HIS18 4.1 14.8 1.0
CG B:HIS18 4.2 13.8 1.0
C3B B:HEC199 4.2 15.2 1.0
C2C B:HEC199 4.2 15.1 1.0
C2B B:HEC199 4.3 15.9 1.0
C3A B:HEC199 4.3 13.8 1.0
C3C B:HEC199 4.3 15.8 1.0
C3D B:HEC199 4.3 13.6 1.0
C2A B:HEC199 4.3 12.9 1.0
C2D B:HEC199 4.3 13.2 1.0
CB B:MET66 4.9 16.6 1.0

Iron binding site 4 out of 8 in 1m70

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Iron binding site 4 out of 8 in the Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe200

b:12.4
occ:1.00
FE B:HEC200 0.0 12.4 1.0
NE2 B:HIS123 2.0 12.0 1.0
NB B:HEC200 2.0 12.3 1.0
NC B:HEC200 2.0 12.9 1.0
ND B:HEC200 2.0 13.7 1.0
NA B:HEC200 2.0 12.7 1.0
SD B:MET167 2.3 14.4 1.0
CE1 B:HIS123 3.0 12.8 1.0
C1B B:HEC200 3.0 12.2 1.0
C4C B:HEC200 3.0 14.3 1.0
CD2 B:HIS123 3.0 12.4 1.0
C1D B:HEC200 3.0 14.8 1.0
C1C B:HEC200 3.0 13.2 1.0
C4A B:HEC200 3.0 11.8 1.0
C4B B:HEC200 3.0 12.2 1.0
C4D B:HEC200 3.1 13.6 1.0
C1A B:HEC200 3.1 13.2 1.0
CG B:MET167 3.3 19.7 1.0
CE B:MET167 3.4 18.1 1.0
CHD B:HEC200 3.4 16.1 1.0
CHB B:HEC200 3.4 12.2 1.0
CHC B:HEC200 3.4 12.7 1.0
CHA B:HEC200 3.4 13.4 1.0
ND1 B:HIS123 4.1 12.4 1.0
CG B:HIS123 4.2 12.4 1.0
C3C B:HEC200 4.2 14.0 1.0
C2C B:HEC200 4.3 14.5 1.0
C3B B:HEC200 4.3 12.1 1.0
C2D B:HEC200 4.3 15.6 1.0
C3A B:HEC200 4.3 12.6 1.0
C3D B:HEC200 4.3 13.7 1.0
C2B B:HEC200 4.3 12.3 1.0
C2A B:HEC200 4.3 12.5 1.0
CB B:MET167 4.7 29.9 1.0

Iron binding site 5 out of 8 in 1m70

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Iron binding site 5 out of 8 in the Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe199

b:11.1
occ:1.00
FE C:HEC199 0.0 11.1 1.0
NB C:HEC199 1.9 12.3 1.0
NC C:HEC199 2.0 12.2 1.0
NA C:HEC199 2.0 11.6 1.0
ND C:HEC199 2.0 12.2 1.0
NE2 C:HIS18 2.0 12.1 1.0
SD C:MET66 2.3 12.7 1.0
CE1 C:HIS18 3.0 12.1 1.0
C1B C:HEC199 3.0 11.7 1.0
C1C C:HEC199 3.0 12.2 1.0
C4C C:HEC199 3.0 12.5 1.0
C4B C:HEC199 3.0 12.3 1.0
C4A C:HEC199 3.0 11.8 1.0
C1D C:HEC199 3.0 12.2 1.0
C1A C:HEC199 3.0 11.5 1.0
CD2 C:HIS18 3.1 12.2 1.0
C4D C:HEC199 3.1 11.5 1.0
CE C:MET66 3.3 13.6 1.0
CHC C:HEC199 3.4 12.6 1.0
CG C:MET66 3.4 13.2 1.0
CHB C:HEC199 3.4 11.6 1.0
CHD C:HEC199 3.4 12.9 1.0
CHA C:HEC199 3.4 11.9 1.0
ND1 C:HIS18 4.1 12.3 1.0
CG C:HIS18 4.2 12.5 1.0
C2C C:HEC199 4.2 12.3 1.0
C3B C:HEC199 4.2 12.8 1.0
C3C C:HEC199 4.3 12.5 1.0
C2B C:HEC199 4.3 12.8 1.0
C3D C:HEC199 4.3 12.5 1.0
C2A C:HEC199 4.3 11.5 1.0
C2D C:HEC199 4.3 12.1 1.0
C3A C:HEC199 4.3 11.7 1.0
CB C:MET66 4.8 13.2 1.0

Iron binding site 6 out of 8 in 1m70

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Iron binding site 6 out of 8 in the Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe200

b:11.4
occ:1.00
FE C:HEC200 0.0 11.4 1.0
NB C:HEC200 2.0 12.5 1.0
ND C:HEC200 2.0 12.0 1.0
NC C:HEC200 2.0 12.4 1.0
NA C:HEC200 2.0 12.4 1.0
NE2 C:HIS123 2.0 11.7 1.0
SD C:MET167 2.3 13.1 1.0
CE1 C:HIS123 3.0 11.9 1.0
C4C C:HEC200 3.0 12.6 1.0
C1B C:HEC200 3.0 12.4 1.0
C1D C:HEC200 3.0 11.9 1.0
C4A C:HEC200 3.0 11.7 1.0
C1C C:HEC200 3.0 12.7 1.0
C4D C:HEC200 3.1 12.7 1.0
C4B C:HEC200 3.1 11.8 1.0
C1A C:HEC200 3.1 11.3 1.0
CD2 C:HIS123 3.1 12.4 1.0
CE C:MET167 3.3 14.8 1.0
CHB C:HEC200 3.4 11.9 1.0
CHD C:HEC200 3.4 12.7 1.0
CHC C:HEC200 3.4 12.2 1.0
CG C:MET167 3.4 13.4 1.0
CHA C:HEC200 3.4 12.0 1.0
ND1 C:HIS123 4.1 12.1 1.0
CG C:HIS123 4.2 12.3 1.0
C3C C:HEC200 4.2 13.7 1.0
C2C C:HEC200 4.2 13.2 1.0
C2D C:HEC200 4.3 12.6 1.0
C3A C:HEC200 4.3 11.9 1.0
C3B C:HEC200 4.3 13.5 1.0
C3D C:HEC200 4.3 13.0 1.0
C2A C:HEC200 4.3 11.5 1.0
C2B C:HEC200 4.3 12.6 1.0
CB C:MET167 4.8 13.6 1.0

Iron binding site 7 out of 8 in 1m70

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Iron binding site 7 out of 8 in the Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe199

b:11.6
occ:1.00
FE D:HEC199 0.0 11.6 1.0
NB D:HEC199 1.9 12.7 1.0
NA D:HEC199 2.0 12.4 1.0
NC D:HEC199 2.0 13.0 1.0
ND D:HEC199 2.0 12.1 1.0
NE2 D:HIS18 2.0 12.4 1.0
SD D:MET66 2.3 13.3 1.0
CE1 D:HIS18 3.0 12.8 1.0
C1B D:HEC199 3.0 12.9 1.0
C4A D:HEC199 3.0 12.3 1.0
C4B D:HEC199 3.0 13.3 1.0
C4C D:HEC199 3.0 12.9 1.0
C1C D:HEC199 3.0 13.4 1.0
C1A D:HEC199 3.0 11.7 1.0
C1D D:HEC199 3.0 13.1 1.0
C4D D:HEC199 3.1 12.0 1.0
CD2 D:HIS18 3.1 12.8 1.0
CE D:MET66 3.3 14.9 1.0
CG D:MET66 3.4 13.5 1.0
CHC D:HEC199 3.4 13.3 1.0
CHB D:HEC199 3.4 12.7 1.0
CHD D:HEC199 3.4 12.4 1.0
CHA D:HEC199 3.4 12.0 1.0
ND1 D:HIS18 4.1 12.7 1.0
CG D:HIS18 4.2 12.6 1.0
C3B D:HEC199 4.2 13.8 1.0
C2C D:HEC199 4.2 12.3 1.0
C3A D:HEC199 4.3 12.4 1.0
C2B D:HEC199 4.3 13.6 1.0
C3D D:HEC199 4.3 13.0 1.0
C2A D:HEC199 4.3 11.9 1.0
C2D D:HEC199 4.3 12.2 1.0
C3C D:HEC199 4.3 12.9 1.0
CB D:MET66 4.8 13.5 1.0

Iron binding site 8 out of 8 in 1m70

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Iron binding site 8 out of 8 in the Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of Oxidized Recombinant Cytochrome C4 From Pseudomonas Stutzeri within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe200

b:11.3
occ:1.00
FE D:HEC200 0.0 11.3 1.0
NB D:HEC200 2.0 12.6 1.0
ND D:HEC200 2.0 11.9 1.0
NC D:HEC200 2.0 12.5 1.0
NA D:HEC200 2.0 11.8 1.0
NE2 D:HIS123 2.0 11.9 1.0
SD D:MET167 2.3 12.6 1.0
CE1 D:HIS123 3.0 11.7 1.0
C4C D:HEC200 3.0 12.2 1.0
C1B D:HEC200 3.0 11.8 1.0
C1D D:HEC200 3.0 12.5 1.0
C1C D:HEC200 3.0 12.3 1.0
C4A D:HEC200 3.0 11.7 1.0
C4B D:HEC200 3.0 12.4 1.0
C4D D:HEC200 3.0 11.4 1.0
C1A D:HEC200 3.1 11.5 1.0
CD2 D:HIS123 3.1 12.4 1.0
CE D:MET167 3.3 14.1 1.0
CG D:MET167 3.4 12.3 1.0
CHD D:HEC200 3.4 11.9 1.0
CHB D:HEC200 3.4 12.0 1.0
CHC D:HEC200 3.4 12.3 1.0
CHA D:HEC200 3.4 12.2 1.0
ND1 D:HIS123 4.1 12.3 1.0
CG D:HIS123 4.2 11.9 1.0
C3C D:HEC200 4.2 13.1 1.0
C2C D:HEC200 4.3 13.1 1.0
C2D D:HEC200 4.3 11.9 1.0
C3D D:HEC200 4.3 12.1 1.0
C3B D:HEC200 4.3 12.2 1.0
C3A D:HEC200 4.3 11.9 1.0
C2A D:HEC200 4.3 11.7 1.0
C2B D:HEC200 4.3 12.0 1.0
CB D:MET167 4.8 13.3 1.0

Reference:

A.Noergaard, P.Harris, S.Larsen, H.E.M.Christensen. Structural Comparison of Recombinant Pseudomonas Stutzeri Cytochrome C4 in Two Oxidation States To Be Published.
Page generated: Sun Dec 13 14:23:16 2020

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