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Iron in PDB 1mbd: X-Ray Structure of Sperm Whale Deoxymoglobin Refined at 1.4A Resolution

Protein crystallography data

The structure of X-Ray Structure of Sperm Whale Deoxymoglobin Refined at 1.4A Resolution, PDB code: 1mbd was solved by S.E.V.Phillips, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 64.660, 31.120, 35.060, 90.00, 105.78, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the X-Ray Structure of Sperm Whale Deoxymoglobin Refined at 1.4A Resolution (pdb code 1mbd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the X-Ray Structure of Sperm Whale Deoxymoglobin Refined at 1.4A Resolution, PDB code: 1mbd:

Iron binding site 1 out of 1 in 1mbd

Go back to Iron Binding Sites List in 1mbd
Iron binding site 1 out of 1 in the X-Ray Structure of Sperm Whale Deoxymoglobin Refined at 1.4A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Structure of Sperm Whale Deoxymoglobin Refined at 1.4A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe155

b:7.9
occ:1.00
FE A:HEM155 0.0 7.9 1.0
NB A:HEM155 2.0 8.2 1.0
NA A:HEM155 2.0 7.7 1.0
NC A:HEM155 2.0 8.6 1.0
ND A:HEM155 2.1 9.5 1.0
NE2 A:HIS93 2.1 6.9 1.0
CE1 A:HIS93 3.0 11.6 1.0
C1B A:HEM155 3.0 6.0 1.0
C4B A:HEM155 3.0 6.8 1.0
C4A A:HEM155 3.0 5.4 1.0
C1D A:HEM155 3.1 8.4 1.0
C4C A:HEM155 3.1 6.3 1.0
C1C A:HEM155 3.1 7.2 1.0
C1A A:HEM155 3.1 4.5 1.0
C4D A:HEM155 3.1 4.4 1.0
CD2 A:HIS93 3.2 8.1 1.0
CHD A:HEM155 3.4 8.2 1.0
CHB A:HEM155 3.4 5.0 1.0
CHC A:HEM155 3.4 5.9 1.0
CHA A:HEM155 3.5 4.5 1.0
O A:HOH348 3.8 21.0 1.0
C2A A:HEM155 4.2 7.7 1.0
C3B A:HEM155 4.3 7.6 1.0
C2B A:HEM155 4.3 9.6 1.0
C3A A:HEM155 4.3 8.0 1.0
C2C A:HEM155 4.3 6.5 1.0
CG A:HIS93 4.3 7.9 1.0
ND1 A:HIS93 4.3 9.6 1.0
C3D A:HEM155 4.3 6.6 1.0
C3C A:HEM155 4.4 7.1 1.0
C2D A:HEM155 4.4 8.0 1.0
NE2 A:HIS64 4.6 19.8 1.0
CE1 A:HIS64 4.8 10.8 1.0
CG2 A:VAL68 4.8 8.0 1.0

Reference:

S.E.Phillips, S.E.V.Phillips. N/A N/A.
Page generated: Sun Dec 13 14:23:29 2020

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