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Iron in PDB 1mmv: Rat Neuronal Nos Heme Domain with Ng-Propyl-L-Arginine Bound

Enzymatic activity of Rat Neuronal Nos Heme Domain with Ng-Propyl-L-Arginine Bound

All present enzymatic activity of Rat Neuronal Nos Heme Domain with Ng-Propyl-L-Arginine Bound:
1.14.13.39;

Protein crystallography data

The structure of Rat Neuronal Nos Heme Domain with Ng-Propyl-L-Arginine Bound, PDB code: 1mmv was solved by L.E.Bretscher, H.Li, T.L.Poulos, O.W.Griffith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.91 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.590, 110.360, 164.860, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 25.6

Other elements in 1mmv:

The structure of Rat Neuronal Nos Heme Domain with Ng-Propyl-L-Arginine Bound also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Rat Neuronal Nos Heme Domain with Ng-Propyl-L-Arginine Bound (pdb code 1mmv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Rat Neuronal Nos Heme Domain with Ng-Propyl-L-Arginine Bound, PDB code: 1mmv:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1mmv

Go back to Iron Binding Sites List in 1mmv
Iron binding site 1 out of 2 in the Rat Neuronal Nos Heme Domain with Ng-Propyl-L-Arginine Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Rat Neuronal Nos Heme Domain with Ng-Propyl-L-Arginine Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1750

b:24.0
occ:1.00
FE A:HEM1750 0.0 24.0 1.0
NC A:HEM1750 2.0 25.5 1.0
ND A:HEM1750 2.0 27.9 1.0
NA A:HEM1750 2.0 27.0 1.0
NB A:HEM1750 2.0 27.8 1.0
SG A:CYS415 2.2 28.1 1.0
C4C A:HEM1750 3.0 23.6 1.0
C1C A:HEM1750 3.1 25.4 1.0
C1D A:HEM1750 3.1 26.4 1.0
C4D A:HEM1750 3.1 26.4 1.0
C1A A:HEM1750 3.1 25.3 1.0
C4A A:HEM1750 3.1 26.4 1.0
C1B A:HEM1750 3.1 28.8 1.0
C4B A:HEM1750 3.1 27.1 1.0
CB A:CYS415 3.3 26.6 1.0
CHD A:HEM1750 3.4 27.1 1.0
CHC A:HEM1750 3.4 27.7 1.0
CHB A:HEM1750 3.5 28.1 1.0
CHA A:HEM1750 3.5 25.8 1.0
O A:HOH2038 3.6 29.9 1.0
NH1 A:3AR1785 3.9 22.1 1.0
CA A:CYS415 4.1 24.6 1.0
C3D A:HEM1750 4.3 28.3 1.0
C2D A:HEM1750 4.3 26.8 1.0
C3C A:HEM1750 4.3 24.8 1.0
C2A A:HEM1750 4.3 25.8 1.0
C2C A:HEM1750 4.3 27.1 1.0
C3A A:HEM1750 4.3 25.4 1.0
C2B A:HEM1750 4.3 28.2 1.0
C3B A:HEM1750 4.3 29.6 1.0
NE1 A:TRP409 4.4 21.4 1.0
C1 A:3AR1785 4.5 23.5 1.0
CZ A:3AR1785 4.6 27.6 1.0
C2 A:3AR1785 4.7 24.1 1.0
C A:CYS415 4.8 24.4 1.0
N A:GLY417 4.9 20.8 1.0
N A:VAL416 4.9 23.4 1.0
NH2 A:3AR1785 5.0 23.7 1.0

Iron binding site 2 out of 2 in 1mmv

Go back to Iron Binding Sites List in 1mmv
Iron binding site 2 out of 2 in the Rat Neuronal Nos Heme Domain with Ng-Propyl-L-Arginine Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Rat Neuronal Nos Heme Domain with Ng-Propyl-L-Arginine Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe2750

b:22.2
occ:1.00
FE B:HEM2750 0.0 22.2 1.0
NB B:HEM2750 2.0 22.6 1.0
NC B:HEM2750 2.0 21.7 1.0
ND B:HEM2750 2.0 21.6 1.0
NA B:HEM2750 2.0 22.9 1.0
SG B:CYS415 2.2 25.8 1.0
C4B B:HEM2750 3.0 25.2 1.0
C1B B:HEM2750 3.0 24.4 1.0
C4C B:HEM2750 3.1 21.3 1.0
C1D B:HEM2750 3.1 22.0 1.0
C1C B:HEM2750 3.1 22.2 1.0
C4D B:HEM2750 3.1 23.7 1.0
C4A B:HEM2750 3.1 23.0 1.0
C1A B:HEM2750 3.1 23.6 1.0
CB B:CYS415 3.4 23.6 1.0
CHC B:HEM2750 3.4 22.7 1.0
CHD B:HEM2750 3.4 23.1 1.0
CHB B:HEM2750 3.4 22.5 1.0
CHA B:HEM2750 3.5 22.8 1.0
O B:HOH3066 3.8 34.9 1.0
NH1 B:3AR2785 3.8 24.0 1.0
CA B:CYS415 4.1 22.3 1.0
C3B B:HEM2750 4.3 27.6 1.0
C2B B:HEM2750 4.3 25.0 1.0
C2C B:HEM2750 4.3 20.9 1.0
C2D B:HEM2750 4.3 23.0 1.0
C3C B:HEM2750 4.3 22.3 1.0
C3D B:HEM2750 4.3 26.4 1.0
C3A B:HEM2750 4.3 23.7 1.0
C2A B:HEM2750 4.3 23.8 1.0
NE1 B:TRP409 4.4 22.8 1.0
C1 B:3AR2785 4.5 23.0 1.0
CZ B:3AR2785 4.5 28.1 1.0
C2 B:3AR2785 4.7 23.6 1.0
N B:GLY417 4.8 25.8 1.0
C B:CYS415 4.9 24.0 1.0
NH2 B:3AR2785 4.9 23.6 1.0
CD1 B:TRP409 5.0 22.2 1.0
N B:VAL416 5.0 22.4 1.0

Reference:

L.E.Bretscher, H.Li, T.L.Poulos, O.W.Griffith. Structural Characterization and Kinetics of Nitric-Oxide Synthase Inhibition By Novel N5-(Iminoalkyl)- and N5-(Iminoalkenyl)-Ornithines J.Biol.Chem. V. 278 46789 2003.
ISSN: ISSN 0021-9258
PubMed: 12960153
DOI: 10.1074/JBC.M306787200
Page generated: Sat Aug 3 11:03:02 2024

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