Atomistry » Iron » PDB 1mpy-1n5u » 1my6
Atomistry »
  Iron »
    PDB 1mpy-1n5u »
      1my6 »

Iron in PDB 1my6: The 1.6 A Structure of Fe-Superoxide Dismutase From the Thermophilic Cyanobacterium Thermosynechococcus Elongatus : Correlation of Epr and Structural Characteristics

Enzymatic activity of The 1.6 A Structure of Fe-Superoxide Dismutase From the Thermophilic Cyanobacterium Thermosynechococcus Elongatus : Correlation of Epr and Structural Characteristics

All present enzymatic activity of The 1.6 A Structure of Fe-Superoxide Dismutase From the Thermophilic Cyanobacterium Thermosynechococcus Elongatus : Correlation of Epr and Structural Characteristics:
1.15.1.1;

Protein crystallography data

The structure of The 1.6 A Structure of Fe-Superoxide Dismutase From the Thermophilic Cyanobacterium Thermosynechococcus Elongatus : Correlation of Epr and Structural Characteristics, PDB code: 1my6 was solved by S.M.Yoshida, D.Cascio, M.R.Sawaya, T.O.Yeates, C.A.Kerfeld, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.00 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.749, 63.644, 74.709, 90.00, 110.45, 90.00
R / Rfree (%) 19.4 / 23.2

Iron Binding Sites:

The binding sites of Iron atom in the The 1.6 A Structure of Fe-Superoxide Dismutase From the Thermophilic Cyanobacterium Thermosynechococcus Elongatus : Correlation of Epr and Structural Characteristics (pdb code 1my6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The 1.6 A Structure of Fe-Superoxide Dismutase From the Thermophilic Cyanobacterium Thermosynechococcus Elongatus : Correlation of Epr and Structural Characteristics, PDB code: 1my6:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1my6

Go back to Iron Binding Sites List in 1my6
Iron binding site 1 out of 2 in the The 1.6 A Structure of Fe-Superoxide Dismutase From the Thermophilic Cyanobacterium Thermosynechococcus Elongatus : Correlation of Epr and Structural Characteristics


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The 1.6 A Structure of Fe-Superoxide Dismutase From the Thermophilic Cyanobacterium Thermosynechococcus Elongatus : Correlation of Epr and Structural Characteristics within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe200

b:13.4
occ:1.00
 OD2 A:ASP161 1.9 5.4 0.5
NE2 A:HIS79 2.1 6.0 0.5
NE2 A:HIS165 2.1 5.4 0.5
NE2 A:HIS27 2.2 5.3 0.5
O A:HOH3001 2.3 15.0 1.0
CD2 A:HIS79 2.9 6.3 0.5
CG A:ASP161 3.0 6.7 0.5
CD2 A:HIS165 3.0 4.5 0.5
CE1 A:HIS27 3.1 4.8 0.5
CE1 A:HIS79 3.1 6.0 0.5
CE1 A:HIS165 3.2 4.2 0.5
CD2 A:HIS27 3.2 4.7 0.5
OD1 A:ASP161 3.4 5.9 0.5
CG A:HIS79 4.1 7.3 0.5
ND1 A:HIS79 4.2 4.8 0.5
CG A:HIS165 4.2 4.2 0.5
ND1 A:HIS27 4.2 5.1 0.5
ND1 A:HIS165 4.2 5.3 0.5
CG A:HIS27 4.3 4.4 0.5
CB A:ASP161 4.3 5.2 0.5
CH2 A:TRP128 4.4 14.3 1.0
CZ2 A:TRP128 4.5 15.1 1.0
CB A:TRP163 4.5 13.2 1.0
CG A:TRP163 4.8 13.7 1.0
CB A:ALA166 4.9 11.6 1.0

Iron binding site 2 out of 2 in 1my6

Go back to Iron Binding Sites List in 1my6
Iron binding site 2 out of 2 in the The 1.6 A Structure of Fe-Superoxide Dismutase From the Thermophilic Cyanobacterium Thermosynechococcus Elongatus : Correlation of Epr and Structural Characteristics


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The 1.6 A Structure of Fe-Superoxide Dismutase From the Thermophilic Cyanobacterium Thermosynechococcus Elongatus : Correlation of Epr and Structural Characteristics within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe200

b:12.8
occ:1.00
 OD2 B:ASP161 1.9 5.6 0.5
NE2 B:HIS165 2.1 4.3 0.5
NE2 B:HIS79 2.1 5.2 0.5
NE2 B:HIS27 2.2 4.4 0.5
O B:HOH3085 2.2 14.9 1.0
CG B:ASP161 3.0 4.7 0.5
CD2 B:HIS165 3.0 5.6 0.5
CD2 B:HIS79 3.0 4.5 0.5
CE1 B:HIS27 3.1 4.3 0.5
CE1 B:HIS165 3.1 5.6 0.5
CE1 B:HIS79 3.2 4.4 0.5
CD2 B:HIS27 3.2 4.2 0.5
OD1 B:ASP161 3.4 4.4 0.5
ND1 B:HIS165 4.2 6.6 0.5
CG B:HIS165 4.2 4.1 0.5
CG B:HIS79 4.2 4.1 0.5
ND1 B:HIS27 4.2 4.0 0.5
ND1 B:HIS79 4.2 5.0 0.5
CH2 B:TRP128 4.3 15.4 1.0
CB B:ASP161 4.3 5.0 0.5
CG B:HIS27 4.3 4.6 0.5
CZ2 B:TRP128 4.4 14.1 1.0
CB B:TRP163 4.5 11.2 1.0
CG B:TRP163 4.7 12.4 1.0
CB B:ALA166 4.9 11.3 1.0
CD1 B:TRP163 5.0 13.8 1.0

Reference:

C.A.Kerfeld, S.Yoshida, K.T.Tran, T.O.Yeates, D.Cascio, H.Bottin, C.Berthomieu, M.Sugiura, A.Boussac. The 1.6 A Resolution Structure of Fe-Superoxide Dismutase From the Thermophilic Cyanobacterium Thermosynechococcus Elongatus. J.Biol.Inorg.Chem. V. 8 707 2003.
ISSN: ISSN 0949-8257
PubMed: 12827458
DOI: 10.1007/S00775-003-0469-0
Page generated: Sun Dec 13 14:24:36 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy