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Iron in PDB 1myh: High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser)

Protein crystallography data

The structure of High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser), PDB code: 1myh was solved by S.J.Smerdon, T.J.Oldfield, A.J.Wilkinson, Z.Dauter, K.Petratos, K.S.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.90
Space group I 21
Cell size a, b, c (Å), α, β, γ (°) 124.700, 42.878, 92.833, 90.00, 92.93, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser) (pdb code 1myh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser), PDB code: 1myh:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1myh

Go back to Iron Binding Sites List in 1myh
Iron binding site 1 out of 2 in the High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe155

b:9.6
occ:1.00
FE A:HEM155 0.0 9.6 1.0
NA A:HEM155 1.9 4.2 1.0
NC A:HEM155 2.0 6.5 1.0
ND A:HEM155 2.0 7.5 1.0
NB A:HEM155 2.1 6.7 1.0
NE2 A:HIS93 2.3 9.5 1.0
O A:HOH184 2.5 11.6 1.0
C4A A:HEM155 2.9 6.5 1.0
C1D A:HEM155 3.0 7.7 1.0
C1B A:HEM155 3.0 6.2 1.0
C1C A:HEM155 3.0 8.2 1.0
C4C A:HEM155 3.0 7.5 1.0
C1A A:HEM155 3.0 7.6 1.0
C4D A:HEM155 3.0 7.7 1.0
C4B A:HEM155 3.1 5.7 1.0
CD2 A:HIS93 3.2 10.8 1.0
CE1 A:HIS93 3.3 9.7 1.0
CHB A:HEM155 3.4 5.5 1.0
CHA A:HEM155 3.5 6.8 1.0
CHD A:HEM155 3.5 6.5 1.0
CHC A:HEM155 3.5 5.9 1.0
C3A A:HEM155 4.2 6.5 1.0
C3D A:HEM155 4.2 8.8 1.0
C2C A:HEM155 4.2 8.3 1.0
C2B A:HEM155 4.2 5.7 1.0
C2A A:HEM155 4.2 8.0 1.0
C2D A:HEM155 4.2 7.4 1.0
C3C A:HEM155 4.3 8.4 1.0
CG A:HIS93 4.3 12.8 1.0
C3B A:HEM155 4.3 5.8 1.0
NE2 A:HIS64 4.3 8.6 1.0
ND1 A:HIS93 4.3 10.2 1.0
CG2 A:VAL68 4.8 10.1 1.0
CE1 A:HIS64 4.8 11.6 1.0

Iron binding site 2 out of 2 in 1myh

Go back to Iron Binding Sites List in 1myh
Iron binding site 2 out of 2 in the High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe155

b:7.1
occ:1.00
FE B:HEM155 0.0 7.1 1.0
NC B:HEM155 1.9 3.9 1.0
NA B:HEM155 1.9 3.8 1.0
ND B:HEM155 2.1 5.1 1.0
NB B:HEM155 2.1 5.1 1.0
NE2 B:HIS93 2.3 5.5 1.0
O B:HOH178 2.3 5.3 1.0
C1C B:HEM155 3.0 6.2 1.0
C4C B:HEM155 3.0 6.7 1.0
C1A B:HEM155 3.0 6.6 1.0
C4D B:HEM155 3.0 6.5 1.0
C4A B:HEM155 3.1 7.0 1.0
C1D B:HEM155 3.1 5.8 1.0
C1B B:HEM155 3.1 4.8 1.0
C4B B:HEM155 3.1 5.2 1.0
CD2 B:HIS93 3.2 7.8 1.0
CE1 B:HIS93 3.3 6.6 1.0
CHC B:HEM155 3.4 5.3 1.0
CHD B:HEM155 3.4 5.4 1.0
CHB B:HEM155 3.4 4.4 1.0
CHA B:HEM155 3.5 5.3 1.0
C3C B:HEM155 4.2 7.8 1.0
C2C B:HEM155 4.2 6.0 1.0
C3A B:HEM155 4.2 6.1 1.0
C2A B:HEM155 4.3 7.6 1.0
C3D B:HEM155 4.3 9.0 1.0
C3B B:HEM155 4.3 5.3 1.0
C2D B:HEM155 4.3 7.2 1.0
ND1 B:HIS93 4.3 8.2 1.0
C2B B:HEM155 4.3 4.7 1.0
CG B:HIS93 4.3 9.7 1.0
NE2 B:HIS64 4.6 9.6 1.0
CG2 B:VAL68 4.8 11.2 1.0

Reference:

T.J.Oldfield, S.J.Smerdon, Z.Dauter, K.Petratos, K.S.Wilson, A.J.Wilkinson. High-Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants: Mb(LYS45----Arg) and Mb(LYS45----Ser). Biochemistry V. 31 8732 1992.
ISSN: ISSN 0006-2960
PubMed: 1390659
DOI: 10.1021/BI00152A008
Page generated: Sun Dec 13 14:24:39 2020

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