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Iron in PDB 1myi: High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser)

Protein crystallography data

The structure of High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser), PDB code: 1myi was solved by S.J.Smerdon, T.J.Oldfield, A.J.Wilkinson, Z.Dauter, K.Petratos, K.S.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.00
Space group I 21
Cell size a, b, c (Å), α, β, γ (°) 125.920, 42.920, 92.950, 90.00, 92.24, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser) (pdb code 1myi). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser), PDB code: 1myi:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1myi

Go back to Iron Binding Sites List in 1myi
Iron binding site 1 out of 2 in the High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe154

b:21.8
occ:1.00
FE A:HEM154 0.0 21.8 1.0
NC A:HEM154 2.0 21.1 1.0
NA A:HEM154 2.0 19.8 1.0
ND A:HEM154 2.0 21.1 1.0
NB A:HEM154 2.1 20.0 1.0
NE2 A:HIS93 2.3 24.7 1.0
O A:HOH156 2.3 22.0 1.0
C1D A:HEM154 3.0 22.5 1.0
C4C A:HEM154 3.1 22.7 1.0
C4D A:HEM154 3.1 23.3 1.0
C1A A:HEM154 3.1 22.7 1.0
C4A A:HEM154 3.1 21.7 1.0
C4B A:HEM154 3.1 20.6 1.0
C1B A:HEM154 3.1 20.6 1.0
C1C A:HEM154 3.1 21.8 1.0
CE1 A:HIS93 3.3 25.6 1.0
CD2 A:HIS93 3.3 26.4 1.0
CHD A:HEM154 3.4 22.1 1.0
CHA A:HEM154 3.4 22.6 1.0
CHC A:HEM154 3.5 21.1 1.0
CHB A:HEM154 3.5 20.8 1.0
C3C A:HEM154 4.3 23.2 1.0
NE2 A:HIS64 4.3 17.5 1.0
C3D A:HEM154 4.3 25.5 1.0
C2D A:HEM154 4.3 24.4 1.0
C2A A:HEM154 4.3 23.3 1.0
C3A A:HEM154 4.3 21.8 1.0
C2C A:HEM154 4.3 21.9 1.0
C3B A:HEM154 4.3 20.2 1.0
C2B A:HEM154 4.4 20.5 1.0
ND1 A:HIS93 4.4 25.4 1.0
CG A:HIS93 4.4 26.0 1.0
CE1 A:HIS64 4.7 18.6 1.0
CG2 A:VAL68 4.9 18.4 1.0

Iron binding site 2 out of 2 in 1myi

Go back to Iron Binding Sites List in 1myi
Iron binding site 2 out of 2 in the High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of High Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants Mb(LYS45-> Arg) and Mb(LYS45-> Ser) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe154

b:20.6
occ:1.00
FE B:HEM154 0.0 20.6 1.0
NC B:HEM154 1.9 18.6 1.0
NA B:HEM154 2.0 18.1 1.0
ND B:HEM154 2.0 20.6 1.0
NB B:HEM154 2.1 18.5 1.0
O B:HOH159 2.2 19.9 1.0
NE2 B:HIS93 2.3 23.4 1.0
C4C B:HEM154 3.0 21.0 1.0
C1D B:HEM154 3.0 21.9 1.0
C4A B:HEM154 3.0 20.0 1.0
C1C B:HEM154 3.0 20.4 1.0
C1A B:HEM154 3.1 20.6 1.0
C4D B:HEM154 3.1 21.6 1.0
C1B B:HEM154 3.1 18.7 1.0
C4B B:HEM154 3.1 18.7 1.0
CD2 B:HIS93 3.2 26.9 1.0
CE1 B:HIS93 3.3 25.3 1.0
CHD B:HEM154 3.4 21.2 1.0
CHB B:HEM154 3.4 19.2 1.0
CHC B:HEM154 3.5 19.8 1.0
CHA B:HEM154 3.5 19.9 1.0
C3D B:HEM154 4.2 24.2 1.0
C3C B:HEM154 4.2 22.1 1.0
C2A B:HEM154 4.2 21.0 1.0
C2C B:HEM154 4.2 20.7 1.0
C3A B:HEM154 4.3 20.2 1.0
C2D B:HEM154 4.3 23.1 1.0
C2B B:HEM154 4.3 18.6 1.0
NE2 B:HIS64 4.3 20.5 1.0
C3B B:HEM154 4.4 18.7 1.0
ND1 B:HIS93 4.4 26.2 1.0
CG B:HIS93 4.4 27.9 1.0
CG2 B:VAL68 4.9 18.3 1.0
CE1 B:HIS64 4.9 20.1 1.0

Reference:

T.J.Oldfield, S.J.Smerdon, Z.Dauter, K.Petratos, K.S.Wilson, A.J.Wilkinson. High-Resolution X-Ray Structures of Pig Metmyoglobin and Two CD3 Mutants: Mb(LYS45----Arg) and Mb(LYS45----Ser). Biochemistry V. 31 8732 1992.
ISSN: ISSN 0006-2960
PubMed: 1390659
DOI: 10.1021/BI00152A008
Page generated: Sat Aug 3 11:11:20 2024

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