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Iron in PDB 1new: Cytochrome C551.5, uc(Nmr)

Iron Binding Sites:

The binding sites of Iron atom in the Cytochrome C551.5, uc(Nmr) (pdb code 1new). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Cytochrome C551.5, uc(Nmr), PDB code: 1new:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in 1new

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Iron binding site 1 out of 3 in the Cytochrome C551.5, uc(Nmr)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cytochrome C551.5, uc(Nmr) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe69

b:0.0
occ:1.00
FE A:HEC69 0.0 0.0 1.0
NE2 A:HIS30 1.9 0.0 1.0
NE2 A:HIS17 2.0 0.0 1.0
NB A:HEC69 2.0 0.0 1.0
NA A:HEC69 2.1 0.0 1.0
NC A:HEC69 2.1 0.0 1.0
ND A:HEC69 2.1 0.0 1.0
CE1 A:HIS30 3.0 0.0 1.0
CE1 A:HIS17 3.0 0.0 1.0
CD2 A:HIS30 3.0 0.0 1.0
CD2 A:HIS17 3.0 0.0 1.0
C4B A:HEC69 3.0 0.0 1.0
C1B A:HEC69 3.0 0.0 1.0
C1C A:HEC69 3.0 0.0 1.0
C4A A:HEC69 3.0 0.0 1.0
C1A A:HEC69 3.1 0.0 1.0
C4C A:HEC69 3.1 0.0 1.0
C1D A:HEC69 3.1 0.0 1.0
C4D A:HEC69 3.1 0.0 1.0
HE1 A:HIS30 3.2 0.0 1.0
HE1 A:HIS17 3.2 0.0 1.0
HD2 A:HIS30 3.3 0.0 1.0
HD2 A:HIS17 3.3 0.0 1.0
CHC A:HEC69 3.4 0.0 1.0
CHB A:HEC69 3.4 0.0 1.0
CHD A:HEC69 3.5 0.0 1.0
CHA A:HEC69 3.5 0.0 1.0
HB2 A:PRO34 4.1 0.0 1.0
ND1 A:HIS30 4.1 0.0 1.0
ND1 A:HIS17 4.1 0.0 1.0
CG A:HIS30 4.1 0.0 1.0
CG A:HIS17 4.1 0.0 1.0
C2B A:HEC69 4.2 0.0 1.0
C3B A:HEC69 4.2 0.0 1.0
C3A A:HEC69 4.3 0.0 1.0
C2A A:HEC69 4.3 0.0 1.0
C2C A:HEC69 4.3 0.0 1.0
C3C A:HEC69 4.3 0.0 1.0
C2D A:HEC69 4.3 0.0 1.0
C3D A:HEC69 4.3 0.0 1.0
HHC A:HEC69 4.5 0.0 1.0
HHB A:HEC69 4.5 0.0 1.0
HHD A:HEC69 4.6 0.0 1.0
HHA A:HEC69 4.6 0.0 1.0
HD11 A:ILE37 5.0 0.0 1.0
HB2 A:CYS29 5.0 0.0 1.0

Iron binding site 2 out of 3 in 1new

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Iron binding site 2 out of 3 in the Cytochrome C551.5, uc(Nmr)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cytochrome C551.5, uc(Nmr) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe70

b:0.0
occ:1.00
FE A:HEC70 0.0 0.0 1.0
NE2 A:HIS53 2.0 0.0 1.0
NE2 A:HIS20 2.0 0.0 1.0
NC A:HEC70 2.1 0.0 1.0
ND A:HEC70 2.1 0.0 1.0
NB A:HEC70 2.1 0.0 1.0
NA A:HEC70 2.1 0.0 1.0
CE1 A:HIS53 2.9 0.0 1.0
CE1 A:HIS20 3.0 0.0 1.0
C4C A:HEC70 3.0 0.0 1.0
C1D A:HEC70 3.1 0.0 1.0
C1C A:HEC70 3.1 0.0 1.0
CD2 A:HIS53 3.1 0.0 1.0
CD2 A:HIS20 3.1 0.0 1.0
C4B A:HEC70 3.1 0.0 1.0
C4D A:HEC70 3.1 0.0 1.0
C1B A:HEC70 3.1 0.0 1.0
C1A A:HEC70 3.1 0.0 1.0
C4A A:HEC70 3.1 0.0 1.0
HE1 A:HIS20 3.2 0.0 1.0
HE1 A:HIS53 3.2 0.0 1.0
HD2 A:HIS20 3.4 0.0 1.0
HD2 A:HIS53 3.4 0.0 1.0
CHD A:HEC70 3.4 0.0 1.0
CHC A:HEC70 3.5 0.0 1.0
CHA A:HEC70 3.5 0.0 1.0
CHB A:HEC70 3.5 0.0 1.0
ND1 A:HIS20 4.1 0.0 1.0
ND1 A:HIS53 4.1 0.0 1.0
CG A:HIS53 4.2 0.0 1.0
CG A:HIS20 4.2 0.0 1.0
C3C A:HEC70 4.3 0.0 1.0
C2C A:HEC70 4.3 0.0 1.0
C2D A:HEC70 4.3 0.0 1.0
C3D A:HEC70 4.3 0.0 1.0
C2B A:HEC70 4.3 0.0 1.0
C3B A:HEC70 4.3 0.0 1.0
C2A A:HEC70 4.3 0.0 1.0
C3A A:HEC70 4.3 0.0 1.0
HBC2 A:HEC69 4.4 0.0 1.0
HBC1 A:HEC71 4.5 0.0 1.0
HHD A:HEC70 4.5 0.0 1.0
HHC A:HEC70 4.5 0.0 1.0
HHA A:HEC70 4.6 0.0 1.0
HHB A:HEC70 4.6 0.0 1.0
HG3 A:PRO59 4.6 0.0 1.0
O A:CYS52 4.8 0.0 1.0
HBC3 A:HEC69 4.9 0.0 1.0

Iron binding site 3 out of 3 in 1new

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Iron binding site 3 out of 3 in the Cytochrome C551.5, uc(Nmr)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cytochrome C551.5, uc(Nmr) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe71

b:0.0
occ:1.00
FE A:HEC71 0.0 0.0 1.0
NE2 A:HIS66 2.0 0.0 1.0
NE2 A:HIS45 2.0 0.0 1.0
NB A:HEC71 2.1 0.0 1.0
NA A:HEC71 2.1 0.0 1.0
ND A:HEC71 2.1 0.0 1.0
NC A:HEC71 2.1 0.0 1.0
CE1 A:HIS45 3.0 0.0 1.0
CE1 A:HIS66 3.0 0.0 1.0
CD2 A:HIS66 3.0 0.0 1.0
C4B A:HEC71 3.0 0.0 1.0
C1A A:HEC71 3.0 0.0 1.0
C4D A:HEC71 3.1 0.0 1.0
C4A A:HEC71 3.1 0.0 1.0
C1B A:HEC71 3.1 0.0 1.0
C1C A:HEC71 3.1 0.0 1.0
CD2 A:HIS45 3.1 0.0 1.0
C1D A:HEC71 3.1 0.0 1.0
C4C A:HEC71 3.2 0.0 1.0
HE1 A:HIS45 3.2 0.0 1.0
HE1 A:HIS66 3.3 0.0 1.0
HD2 A:HIS66 3.3 0.0 1.0
HD2 A:HIS45 3.4 0.0 1.0
CHC A:HEC71 3.4 0.0 1.0
CHA A:HEC71 3.4 0.0 1.0
CHB A:HEC71 3.5 0.0 1.0
CHD A:HEC71 3.6 0.0 1.0
ND1 A:HIS45 4.1 0.0 1.0
ND1 A:HIS66 4.1 0.0 1.0
CG A:HIS66 4.1 0.0 1.0
CG A:HIS45 4.2 0.0 1.0
C3B A:HEC71 4.3 0.0 1.0
C2A A:HEC71 4.3 0.0 1.0
C3A A:HEC71 4.3 0.0 1.0
C2B A:HEC71 4.3 0.0 1.0
C3D A:HEC71 4.3 0.0 1.0
C2D A:HEC71 4.3 0.0 1.0
C2C A:HEC71 4.3 0.0 1.0
C3C A:HEC71 4.4 0.0 1.0
HHC A:HEC71 4.5 0.0 1.0
HHA A:HEC71 4.5 0.0 1.0
HHB A:HEC71 4.5 0.0 1.0
HHD A:HEC71 4.6 0.0 1.0
HD2 A:LYS50 4.7 0.0 1.0
HG13 A:VAL13 4.8 0.0 1.0

Reference:

M.Assfalg, L.Banci, I.Bertini, M.Bruschi, P.Turano. 800 Mhz 1H uc(Nmr) Solution Structure Refinement of Oxidized Cytochrome C7 From Desulfuromonas Acetoxidans. Eur.J.Biochem. V. 256 261 1998.
ISSN: ISSN 0014-2956
PubMed: 9760163
DOI: 10.1046/J.1432-1327.1998.2560261.X
Page generated: Sat Aug 3 11:34:59 2024

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