Iron in PDB 1new: Cytochrome C551.5, uc(Nmr)
Iron Binding Sites:
The binding sites of Iron atom in the Cytochrome C551.5, uc(Nmr)
(pdb code 1new). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the
Cytochrome C551.5, uc(Nmr), PDB code: 1new:
Jump to Iron binding site number:
1;
2;
3;
Iron binding site 1 out
of 3 in 1new
Go back to
Iron Binding Sites List in 1new
Iron binding site 1 out
of 3 in the Cytochrome C551.5, uc(Nmr)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cytochrome C551.5, uc(Nmr) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe69
b:0.0
occ:1.00
|
FE
|
A:HEC69
|
0.0
|
0.0
|
1.0
|
NE2
|
A:HIS30
|
1.9
|
0.0
|
1.0
|
NE2
|
A:HIS17
|
2.0
|
0.0
|
1.0
|
NB
|
A:HEC69
|
2.0
|
0.0
|
1.0
|
NA
|
A:HEC69
|
2.1
|
0.0
|
1.0
|
NC
|
A:HEC69
|
2.1
|
0.0
|
1.0
|
ND
|
A:HEC69
|
2.1
|
0.0
|
1.0
|
CE1
|
A:HIS30
|
3.0
|
0.0
|
1.0
|
CE1
|
A:HIS17
|
3.0
|
0.0
|
1.0
|
CD2
|
A:HIS30
|
3.0
|
0.0
|
1.0
|
CD2
|
A:HIS17
|
3.0
|
0.0
|
1.0
|
C4B
|
A:HEC69
|
3.0
|
0.0
|
1.0
|
C1B
|
A:HEC69
|
3.0
|
0.0
|
1.0
|
C1C
|
A:HEC69
|
3.0
|
0.0
|
1.0
|
C4A
|
A:HEC69
|
3.0
|
0.0
|
1.0
|
C1A
|
A:HEC69
|
3.1
|
0.0
|
1.0
|
C4C
|
A:HEC69
|
3.1
|
0.0
|
1.0
|
C1D
|
A:HEC69
|
3.1
|
0.0
|
1.0
|
C4D
|
A:HEC69
|
3.1
|
0.0
|
1.0
|
HE1
|
A:HIS30
|
3.2
|
0.0
|
1.0
|
HE1
|
A:HIS17
|
3.2
|
0.0
|
1.0
|
HD2
|
A:HIS30
|
3.3
|
0.0
|
1.0
|
HD2
|
A:HIS17
|
3.3
|
0.0
|
1.0
|
CHC
|
A:HEC69
|
3.4
|
0.0
|
1.0
|
CHB
|
A:HEC69
|
3.4
|
0.0
|
1.0
|
CHD
|
A:HEC69
|
3.5
|
0.0
|
1.0
|
CHA
|
A:HEC69
|
3.5
|
0.0
|
1.0
|
HB2
|
A:PRO34
|
4.1
|
0.0
|
1.0
|
ND1
|
A:HIS30
|
4.1
|
0.0
|
1.0
|
ND1
|
A:HIS17
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS30
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS17
|
4.1
|
0.0
|
1.0
|
C2B
|
A:HEC69
|
4.2
|
0.0
|
1.0
|
C3B
|
A:HEC69
|
4.2
|
0.0
|
1.0
|
C3A
|
A:HEC69
|
4.3
|
0.0
|
1.0
|
C2A
|
A:HEC69
|
4.3
|
0.0
|
1.0
|
C2C
|
A:HEC69
|
4.3
|
0.0
|
1.0
|
C3C
|
A:HEC69
|
4.3
|
0.0
|
1.0
|
C2D
|
A:HEC69
|
4.3
|
0.0
|
1.0
|
C3D
|
A:HEC69
|
4.3
|
0.0
|
1.0
|
HHC
|
A:HEC69
|
4.5
|
0.0
|
1.0
|
HHB
|
A:HEC69
|
4.5
|
0.0
|
1.0
|
HHD
|
A:HEC69
|
4.6
|
0.0
|
1.0
|
HHA
|
A:HEC69
|
4.6
|
0.0
|
1.0
|
HD11
|
A:ILE37
|
5.0
|
0.0
|
1.0
|
HB2
|
A:CYS29
|
5.0
|
0.0
|
1.0
|
|
Iron binding site 2 out
of 3 in 1new
Go back to
Iron Binding Sites List in 1new
Iron binding site 2 out
of 3 in the Cytochrome C551.5, uc(Nmr)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cytochrome C551.5, uc(Nmr) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe70
b:0.0
occ:1.00
|
FE
|
A:HEC70
|
0.0
|
0.0
|
1.0
|
NE2
|
A:HIS53
|
2.0
|
0.0
|
1.0
|
NE2
|
A:HIS20
|
2.0
|
0.0
|
1.0
|
NC
|
A:HEC70
|
2.1
|
0.0
|
1.0
|
ND
|
A:HEC70
|
2.1
|
0.0
|
1.0
|
NB
|
A:HEC70
|
2.1
|
0.0
|
1.0
|
NA
|
A:HEC70
|
2.1
|
0.0
|
1.0
|
CE1
|
A:HIS53
|
2.9
|
0.0
|
1.0
|
CE1
|
A:HIS20
|
3.0
|
0.0
|
1.0
|
C4C
|
A:HEC70
|
3.0
|
0.0
|
1.0
|
C1D
|
A:HEC70
|
3.1
|
0.0
|
1.0
|
C1C
|
A:HEC70
|
3.1
|
0.0
|
1.0
|
CD2
|
A:HIS53
|
3.1
|
0.0
|
1.0
|
CD2
|
A:HIS20
|
3.1
|
0.0
|
1.0
|
C4B
|
A:HEC70
|
3.1
|
0.0
|
1.0
|
C4D
|
A:HEC70
|
3.1
|
0.0
|
1.0
|
C1B
|
A:HEC70
|
3.1
|
0.0
|
1.0
|
C1A
|
A:HEC70
|
3.1
|
0.0
|
1.0
|
C4A
|
A:HEC70
|
3.1
|
0.0
|
1.0
|
HE1
|
A:HIS20
|
3.2
|
0.0
|
1.0
|
HE1
|
A:HIS53
|
3.2
|
0.0
|
1.0
|
HD2
|
A:HIS20
|
3.4
|
0.0
|
1.0
|
HD2
|
A:HIS53
|
3.4
|
0.0
|
1.0
|
CHD
|
A:HEC70
|
3.4
|
0.0
|
1.0
|
CHC
|
A:HEC70
|
3.5
|
0.0
|
1.0
|
CHA
|
A:HEC70
|
3.5
|
0.0
|
1.0
|
CHB
|
A:HEC70
|
3.5
|
0.0
|
1.0
|
ND1
|
A:HIS20
|
4.1
|
0.0
|
1.0
|
ND1
|
A:HIS53
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS53
|
4.2
|
0.0
|
1.0
|
CG
|
A:HIS20
|
4.2
|
0.0
|
1.0
|
C3C
|
A:HEC70
|
4.3
|
0.0
|
1.0
|
C2C
|
A:HEC70
|
4.3
|
0.0
|
1.0
|
C2D
|
A:HEC70
|
4.3
|
0.0
|
1.0
|
C3D
|
A:HEC70
|
4.3
|
0.0
|
1.0
|
C2B
|
A:HEC70
|
4.3
|
0.0
|
1.0
|
C3B
|
A:HEC70
|
4.3
|
0.0
|
1.0
|
C2A
|
A:HEC70
|
4.3
|
0.0
|
1.0
|
C3A
|
A:HEC70
|
4.3
|
0.0
|
1.0
|
HBC2
|
A:HEC69
|
4.4
|
0.0
|
1.0
|
HBC1
|
A:HEC71
|
4.5
|
0.0
|
1.0
|
HHD
|
A:HEC70
|
4.5
|
0.0
|
1.0
|
HHC
|
A:HEC70
|
4.5
|
0.0
|
1.0
|
HHA
|
A:HEC70
|
4.6
|
0.0
|
1.0
|
HHB
|
A:HEC70
|
4.6
|
0.0
|
1.0
|
HG3
|
A:PRO59
|
4.6
|
0.0
|
1.0
|
O
|
A:CYS52
|
4.8
|
0.0
|
1.0
|
HBC3
|
A:HEC69
|
4.9
|
0.0
|
1.0
|
|
Iron binding site 3 out
of 3 in 1new
Go back to
Iron Binding Sites List in 1new
Iron binding site 3 out
of 3 in the Cytochrome C551.5, uc(Nmr)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cytochrome C551.5, uc(Nmr) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe71
b:0.0
occ:1.00
|
FE
|
A:HEC71
|
0.0
|
0.0
|
1.0
|
NE2
|
A:HIS66
|
2.0
|
0.0
|
1.0
|
NE2
|
A:HIS45
|
2.0
|
0.0
|
1.0
|
NB
|
A:HEC71
|
2.1
|
0.0
|
1.0
|
NA
|
A:HEC71
|
2.1
|
0.0
|
1.0
|
ND
|
A:HEC71
|
2.1
|
0.0
|
1.0
|
NC
|
A:HEC71
|
2.1
|
0.0
|
1.0
|
CE1
|
A:HIS45
|
3.0
|
0.0
|
1.0
|
CE1
|
A:HIS66
|
3.0
|
0.0
|
1.0
|
CD2
|
A:HIS66
|
3.0
|
0.0
|
1.0
|
C4B
|
A:HEC71
|
3.0
|
0.0
|
1.0
|
C1A
|
A:HEC71
|
3.0
|
0.0
|
1.0
|
C4D
|
A:HEC71
|
3.1
|
0.0
|
1.0
|
C4A
|
A:HEC71
|
3.1
|
0.0
|
1.0
|
C1B
|
A:HEC71
|
3.1
|
0.0
|
1.0
|
C1C
|
A:HEC71
|
3.1
|
0.0
|
1.0
|
CD2
|
A:HIS45
|
3.1
|
0.0
|
1.0
|
C1D
|
A:HEC71
|
3.1
|
0.0
|
1.0
|
C4C
|
A:HEC71
|
3.2
|
0.0
|
1.0
|
HE1
|
A:HIS45
|
3.2
|
0.0
|
1.0
|
HE1
|
A:HIS66
|
3.3
|
0.0
|
1.0
|
HD2
|
A:HIS66
|
3.3
|
0.0
|
1.0
|
HD2
|
A:HIS45
|
3.4
|
0.0
|
1.0
|
CHC
|
A:HEC71
|
3.4
|
0.0
|
1.0
|
CHA
|
A:HEC71
|
3.4
|
0.0
|
1.0
|
CHB
|
A:HEC71
|
3.5
|
0.0
|
1.0
|
CHD
|
A:HEC71
|
3.6
|
0.0
|
1.0
|
ND1
|
A:HIS45
|
4.1
|
0.0
|
1.0
|
ND1
|
A:HIS66
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS66
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS45
|
4.2
|
0.0
|
1.0
|
C3B
|
A:HEC71
|
4.3
|
0.0
|
1.0
|
C2A
|
A:HEC71
|
4.3
|
0.0
|
1.0
|
C3A
|
A:HEC71
|
4.3
|
0.0
|
1.0
|
C2B
|
A:HEC71
|
4.3
|
0.0
|
1.0
|
C3D
|
A:HEC71
|
4.3
|
0.0
|
1.0
|
C2D
|
A:HEC71
|
4.3
|
0.0
|
1.0
|
C2C
|
A:HEC71
|
4.3
|
0.0
|
1.0
|
C3C
|
A:HEC71
|
4.4
|
0.0
|
1.0
|
HHC
|
A:HEC71
|
4.5
|
0.0
|
1.0
|
HHA
|
A:HEC71
|
4.5
|
0.0
|
1.0
|
HHB
|
A:HEC71
|
4.5
|
0.0
|
1.0
|
HHD
|
A:HEC71
|
4.6
|
0.0
|
1.0
|
HD2
|
A:LYS50
|
4.7
|
0.0
|
1.0
|
HG13
|
A:VAL13
|
4.8
|
0.0
|
1.0
|
|
Reference:
M.Assfalg,
L.Banci,
I.Bertini,
M.Bruschi,
P.Turano.
800 Mhz 1H uc(Nmr) Solution Structure Refinement of Oxidized Cytochrome C7 From Desulfuromonas Acetoxidans. Eur.J.Biochem. V. 256 261 1998.
ISSN: ISSN 0014-2956
PubMed: 9760163
DOI: 10.1046/J.1432-1327.1998.2560261.X
Page generated: Sat Aug 3 11:34:59 2024
|