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Iron in PDB 1no3: Refined Structure of Soybean Lipoxygenase-3 with 4-Nitrocatechol at 2.15 Angstrom Resolution

Enzymatic activity of Refined Structure of Soybean Lipoxygenase-3 with 4-Nitrocatechol at 2.15 Angstrom Resolution

All present enzymatic activity of Refined Structure of Soybean Lipoxygenase-3 with 4-Nitrocatechol at 2.15 Angstrom Resolution:
1.13.11.12;

Protein crystallography data

The structure of Refined Structure of Soybean Lipoxygenase-3 with 4-Nitrocatechol at 2.15 Angstrom Resolution, PDB code: 1no3 was solved by E.Skrzypczak-Jankun, O.Y.Borbulevych, J.Jankun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.15
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 112.905, 137.531, 61.880, 90.00, 95.48, 90.00
R / Rfree (%) 18.6 / 23.3

Iron Binding Sites:

The binding sites of Iron atom in the Refined Structure of Soybean Lipoxygenase-3 with 4-Nitrocatechol at 2.15 Angstrom Resolution (pdb code 1no3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Refined Structure of Soybean Lipoxygenase-3 with 4-Nitrocatechol at 2.15 Angstrom Resolution, PDB code: 1no3:

Iron binding site 1 out of 1 in 1no3

Go back to Iron Binding Sites List in 1no3
Iron binding site 1 out of 1 in the Refined Structure of Soybean Lipoxygenase-3 with 4-Nitrocatechol at 2.15 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Refined Structure of Soybean Lipoxygenase-3 with 4-Nitrocatechol at 2.15 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe858

b:45.5
occ:1.00
 O A:HOH1533 2.1 40.2 1.0
OXT A:ILE857 2.2 30.3 1.0
NE2 A:HIS709 2.2 19.5 1.0
NE2 A:HIS523 2.2 27.0 1.0
NE2 A:HIS518 2.4 32.2 0.5
NE2 A:HIS518 2.9 32.3 0.5
CE1 A:HIS523 2.9 22.9 1.0
CE1 A:HIS709 3.1 19.1 1.0
CD2 A:HIS709 3.2 19.8 1.0
C A:ILE857 3.2 29.7 1.0
CE1 A:HIS518 3.3 31.9 0.5
CD2 A:HIS523 3.3 23.6 1.0
O A:ILE857 3.4 31.8 1.0
CD2 A:HIS518 3.4 30.4 0.5
CE1 A:HIS518 3.4 32.4 0.5
OD1 A:ASN713 3.6 22.0 1.0
CD2 A:HIS518 3.9 28.8 0.5
CG A:ASN713 4.0 17.6 1.0
ND1 A:HIS523 4.1 20.4 1.0
CG2 A:ILE855 4.2 23.2 1.0
ND1 A:HIS709 4.2 17.9 1.0
CG A:HIS709 4.3 21.5 1.0
ND1 A:HIS518 4.4 30.4 0.5
CG A:HIS523 4.4 23.6 1.0
ND2 A:ASN713 4.5 18.4 1.0
ND1 A:HIS518 4.5 31.4 0.5
CG A:HIS518 4.5 28.2 0.5
C1 A:4NC859 4.6 37.9 0.5
CB A:ASN713 4.6 17.7 1.0
C2 A:4NC859 4.6 38.0 0.5
CG A:HIS518 4.7 27.8 0.5
CA A:ILE857 4.7 28.3 1.0
O7 A:4NC859 4.7 38.8 0.5
O8 A:4NC859 4.8 40.1 0.5
N A:ILE857 5.0 26.9 1.0

Reference:

E.Skrzypczak-Jankun, O.Y.Borbulevych, J.Jankun. Soybean Lipoxygenase-3 in Complex with 4-Nitrocatechol. Acta Crystallogr.,Sect.D V. 60 613 2004.
ISSN: ISSN 0907-4449
PubMed: 14993710
DOI: 10.1107/S0907444904000861
Page generated: Sat Aug 3 11:57:17 2024

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