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Iron in PDB 1o12: Crystal Structure of N-Acetylglucosamine-6-Phosphate Deacetylase (TM0814) From Thermotoga Maritima at 2.5 A Resolution

Enzymatic activity of Crystal Structure of N-Acetylglucosamine-6-Phosphate Deacetylase (TM0814) From Thermotoga Maritima at 2.5 A Resolution

All present enzymatic activity of Crystal Structure of N-Acetylglucosamine-6-Phosphate Deacetylase (TM0814) From Thermotoga Maritima at 2.5 A Resolution:
3.5.1.25;

Protein crystallography data

The structure of Crystal Structure of N-Acetylglucosamine-6-Phosphate Deacetylase (TM0814) From Thermotoga Maritima at 2.5 A Resolution, PDB code: 1o12 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.53 / 2.50
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 85.070, 85.070, 206.010, 90.00, 90.00, 120.00
R / Rfree (%) 19.5 / 25.1

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of N-Acetylglucosamine-6-Phosphate Deacetylase (TM0814) From Thermotoga Maritima at 2.5 A Resolution (pdb code 1o12). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of N-Acetylglucosamine-6-Phosphate Deacetylase (TM0814) From Thermotoga Maritima at 2.5 A Resolution, PDB code: 1o12:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1o12

Go back to Iron Binding Sites List in 1o12
Iron binding site 1 out of 2 in the Crystal Structure of N-Acetylglucosamine-6-Phosphate Deacetylase (TM0814) From Thermotoga Maritima at 2.5 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of N-Acetylglucosamine-6-Phosphate Deacetylase (TM0814) From Thermotoga Maritima at 2.5 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:67.2
occ:0.97
OE2 A:GLU115 2.2 50.2 1.0
NE2 A:HIS176 2.2 43.3 1.0
NE2 A:HIS197 2.3 42.4 1.0
CE1 A:HIS176 2.7 42.9 1.0
O A:HOH491 2.8 50.9 1.0
O A:HOH408 2.8 31.2 1.0
CD A:GLU115 3.1 44.7 1.0
CE1 A:HIS197 3.2 42.1 1.0
CD2 A:HIS197 3.3 42.4 1.0
OE1 A:GLU115 3.5 47.1 1.0
CD2 A:HIS176 3.5 42.0 1.0
NE2 A:HIS127 3.8 45.4 1.0
ND1 A:HIS176 4.0 41.8 1.0
CD2 A:HIS127 4.2 47.5 1.0
CG A:GLU115 4.3 43.5 1.0
ND1 A:HIS197 4.4 41.6 1.0
CG A:HIS176 4.4 41.6 1.0
CG A:HIS197 4.5 40.6 1.0
CE1 A:HIS49 4.8 29.7 1.0
OD1 A:ASP255 4.8 43.9 1.0
O A:GLY125 4.9 54.2 1.0
NE2 A:HIS49 5.0 32.1 1.0

Iron binding site 2 out of 2 in 1o12

Go back to Iron Binding Sites List in 1o12
Iron binding site 2 out of 2 in the Crystal Structure of N-Acetylglucosamine-6-Phosphate Deacetylase (TM0814) From Thermotoga Maritima at 2.5 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of N-Acetylglucosamine-6-Phosphate Deacetylase (TM0814) From Thermotoga Maritima at 2.5 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:53.0
occ:0.97
OE2 B:GLU115 2.2 41.7 1.0
NE2 B:HIS197 2.3 40.5 1.0
NE2 B:HIS176 2.4 39.3 1.0
O B:HOH405 2.6 40.3 1.0
CE1 B:HIS176 2.9 39.8 1.0
O B:HOH407 2.9 33.1 1.0
CD B:GLU115 3.2 39.0 1.0
CD2 B:HIS197 3.2 40.0 1.0
CE1 B:HIS197 3.4 40.0 1.0
OE1 B:GLU115 3.5 42.1 1.0
CD2 B:HIS176 3.6 38.3 1.0
ND1 B:HIS176 4.1 36.8 1.0
NE2 B:HIS127 4.3 49.1 1.0
CG B:HIS197 4.4 38.7 1.0
ND1 B:HIS197 4.4 39.6 1.0
CG B:GLU115 4.5 37.3 1.0
CE1 B:HIS49 4.5 33.3 1.0
CG B:HIS176 4.5 37.7 1.0
CD2 B:HIS127 4.5 50.0 1.0
NE2 B:HIS49 4.8 32.9 1.0
O B:HOH446 5.0 42.5 1.0
OD1 B:ASP255 5.0 34.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Dec 13 14:26:16 2020

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