Iron in PDB 1o1i: Cyanomet Hemoglobin (A-Gly-C:V1M,L29F,H58Q; B,D:V1M,L106W)
Protein crystallography data
The structure of Cyanomet Hemoglobin (A-Gly-C:V1M,L29F,H58Q; B,D:V1M,L106W), PDB code: 1o1i
was solved by
E.A.Brucker,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.00 /
2.30
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
56.671,
56.671,
185.834,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.4 /
26.7
|
Iron Binding Sites:
The binding sites of Iron atom in the Cyanomet Hemoglobin (A-Gly-C:V1M,L29F,H58Q; B,D:V1M,L106W)
(pdb code 1o1i). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Cyanomet Hemoglobin (A-Gly-C:V1M,L29F,H58Q; B,D:V1M,L106W), PDB code: 1o1i:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 1o1i
Go back to
Iron Binding Sites List in 1o1i
Iron binding site 1 out
of 2 in the Cyanomet Hemoglobin (A-Gly-C:V1M,L29F,H58Q; B,D:V1M,L106W)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cyanomet Hemoglobin (A-Gly-C:V1M,L29F,H58Q; B,D:V1M,L106W) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe150
b:27.8
occ:1.00
|
FE
|
A:HEM150
|
0.0
|
27.8
|
1.0
|
C
|
A:CYN151
|
1.9
|
21.9
|
1.0
|
ND
|
A:HEM150
|
2.0
|
35.0
|
1.0
|
NC
|
A:HEM150
|
2.0
|
35.8
|
1.0
|
NA
|
A:HEM150
|
2.0
|
45.2
|
1.0
|
NB
|
A:HEM150
|
2.0
|
28.0
|
1.0
|
NE2
|
A:HIS87
|
2.1
|
21.3
|
1.0
|
CE1
|
A:HIS87
|
3.0
|
20.4
|
1.0
|
C4D
|
A:HEM150
|
3.1
|
41.1
|
1.0
|
C1C
|
A:HEM150
|
3.1
|
33.9
|
1.0
|
C4A
|
A:HEM150
|
3.1
|
36.0
|
1.0
|
C1B
|
A:HEM150
|
3.1
|
32.7
|
1.0
|
C4C
|
A:HEM150
|
3.1
|
38.2
|
1.0
|
C4B
|
A:HEM150
|
3.1
|
32.2
|
1.0
|
C1D
|
A:HEM150
|
3.1
|
38.9
|
1.0
|
N
|
A:CYN151
|
3.1
|
57.5
|
1.0
|
C1A
|
A:HEM150
|
3.1
|
41.8
|
1.0
|
CD2
|
A:HIS87
|
3.2
|
26.1
|
1.0
|
CHB
|
A:HEM150
|
3.2
|
32.8
|
1.0
|
CHA
|
A:HEM150
|
3.2
|
44.9
|
1.0
|
CHC
|
A:HEM150
|
3.2
|
31.7
|
1.0
|
CHD
|
A:HEM150
|
3.2
|
37.9
|
1.0
|
ND1
|
A:HIS87
|
4.2
|
16.9
|
1.0
|
CG
|
A:HIS87
|
4.3
|
19.5
|
1.0
|
C3D
|
A:HEM150
|
4.3
|
43.0
|
1.0
|
C2D
|
A:HEM150
|
4.3
|
45.1
|
1.0
|
C2C
|
A:HEM150
|
4.3
|
29.0
|
1.0
|
C3A
|
A:HEM150
|
4.3
|
39.5
|
1.0
|
C2B
|
A:HEM150
|
4.3
|
38.1
|
1.0
|
C2A
|
A:HEM150
|
4.3
|
44.5
|
1.0
|
C3C
|
A:HEM150
|
4.3
|
33.6
|
1.0
|
C3B
|
A:HEM150
|
4.3
|
32.6
|
1.0
|
NE2
|
A:GLN58
|
4.8
|
60.7
|
1.0
|
|
Iron binding site 2 out
of 2 in 1o1i
Go back to
Iron Binding Sites List in 1o1i
Iron binding site 2 out
of 2 in the Cyanomet Hemoglobin (A-Gly-C:V1M,L29F,H58Q; B,D:V1M,L106W)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cyanomet Hemoglobin (A-Gly-C:V1M,L29F,H58Q; B,D:V1M,L106W) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe150
b:32.9
occ:1.00
|
FE
|
B:HEM150
|
0.0
|
32.9
|
1.0
|
C
|
B:CYN151
|
1.9
|
25.4
|
1.0
|
NA
|
B:HEM150
|
2.0
|
47.7
|
1.0
|
NB
|
B:HEM150
|
2.0
|
27.7
|
1.0
|
ND
|
B:HEM150
|
2.0
|
42.1
|
1.0
|
NC
|
B:HEM150
|
2.0
|
31.9
|
1.0
|
NE2
|
B:HIS92
|
2.2
|
29.2
|
1.0
|
N
|
B:CYN151
|
3.0
|
52.2
|
1.0
|
C4C
|
B:HEM150
|
3.1
|
33.2
|
1.0
|
C4D
|
B:HEM150
|
3.1
|
41.3
|
1.0
|
C1C
|
B:HEM150
|
3.1
|
29.2
|
1.0
|
C4A
|
B:HEM150
|
3.1
|
44.1
|
1.0
|
C1B
|
B:HEM150
|
3.1
|
26.8
|
1.0
|
C4B
|
B:HEM150
|
3.1
|
32.9
|
1.0
|
C1D
|
B:HEM150
|
3.1
|
36.6
|
1.0
|
C1A
|
B:HEM150
|
3.1
|
52.0
|
1.0
|
CE1
|
B:HIS92
|
3.1
|
32.8
|
1.0
|
CD2
|
B:HIS92
|
3.2
|
29.7
|
1.0
|
CHB
|
B:HEM150
|
3.2
|
36.8
|
1.0
|
CHD
|
B:HEM150
|
3.2
|
36.5
|
1.0
|
CHA
|
B:HEM150
|
3.2
|
47.1
|
1.0
|
CHC
|
B:HEM150
|
3.2
|
28.8
|
1.0
|
ND1
|
B:HIS92
|
4.2
|
29.7
|
1.0
|
CG
|
B:HIS92
|
4.3
|
35.6
|
1.0
|
C3D
|
B:HEM150
|
4.3
|
39.7
|
1.0
|
C2C
|
B:HEM150
|
4.3
|
31.9
|
1.0
|
C3A
|
B:HEM150
|
4.3
|
45.2
|
1.0
|
C2D
|
B:HEM150
|
4.3
|
33.1
|
1.0
|
C2B
|
B:HEM150
|
4.3
|
34.1
|
1.0
|
C2A
|
B:HEM150
|
4.3
|
52.4
|
1.0
|
C3C
|
B:HEM150
|
4.3
|
33.0
|
1.0
|
C3B
|
B:HEM150
|
4.3
|
35.2
|
1.0
|
NE2
|
B:HIS63
|
4.6
|
34.6
|
1.0
|
CG2
|
B:VAL67
|
5.0
|
29.9
|
1.0
|
|
Reference:
E.A.Brucker,
N/A.
N/A N/A.
Page generated: Sat Aug 3 12:06:34 2024
|