Iron in PDB 1oah: Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).
Enzymatic activity of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).
All present enzymatic activity of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).:
1.7.2.2;
Protein crystallography data
The structure of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa)., PDB code: 1oah
was solved by
C.A.Cunha,
S.Macieira,
J.M.Dias,
G.Almeida,
L.L.Goncalves,
C.Costa,
J.Lampreia,
R.Huber,
J.J.G.Moura,
I.Moura,
M.J.Romao,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
2.30
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
78.940,
104.600,
143.180,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.9 /
22.4
|
Other elements in 1oah:
The structure of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa). also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).
(pdb code 1oah). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa)., PDB code: 1oah:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 1oah
Go back to
Iron Binding Sites List in 1oah
Iron binding site 1 out
of 10 in the Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1520
b:21.6
occ:1.00
|
FE
|
A:HEC1520
|
0.0
|
21.6
|
1.0
|
NA
|
A:HEC1520
|
2.0
|
21.6
|
1.0
|
NC
|
A:HEC1520
|
2.0
|
19.9
|
1.0
|
ND
|
A:HEC1520
|
2.0
|
20.0
|
1.0
|
NB
|
A:HEC1520
|
2.1
|
21.7
|
1.0
|
O
|
A:HOH2141
|
2.1
|
21.4
|
1.0
|
NZ
|
A:LYS150
|
2.1
|
20.5
|
1.0
|
C1A
|
A:HEC1520
|
3.0
|
21.8
|
1.0
|
C4D
|
A:HEC1520
|
3.0
|
20.4
|
1.0
|
C1D
|
A:HEC1520
|
3.0
|
19.7
|
1.0
|
C4A
|
A:HEC1520
|
3.0
|
21.9
|
1.0
|
C1B
|
A:HEC1520
|
3.0
|
22.0
|
1.0
|
C1C
|
A:HEC1520
|
3.1
|
20.7
|
1.0
|
C4C
|
A:HEC1520
|
3.1
|
19.9
|
1.0
|
C4B
|
A:HEC1520
|
3.1
|
21.8
|
1.0
|
CE
|
A:LYS150
|
3.1
|
21.6
|
1.0
|
CHA
|
A:HEC1520
|
3.4
|
21.5
|
1.0
|
CHD
|
A:HEC1520
|
3.4
|
20.4
|
1.0
|
CHB
|
A:HEC1520
|
3.4
|
22.1
|
1.0
|
CHC
|
A:HEC1520
|
3.4
|
21.1
|
1.0
|
NE2
|
A:HIS299
|
4.1
|
21.7
|
1.0
|
O
|
A:HOH2069
|
4.2
|
22.4
|
1.0
|
O
|
A:HOH2101
|
4.2
|
23.7
|
1.0
|
C2A
|
A:HEC1520
|
4.2
|
21.4
|
1.0
|
C2B
|
A:HEC1520
|
4.2
|
22.0
|
1.0
|
C3D
|
A:HEC1520
|
4.2
|
19.7
|
1.0
|
C3A
|
A:HEC1520
|
4.2
|
22.3
|
1.0
|
C2D
|
A:HEC1520
|
4.3
|
19.7
|
1.0
|
C3B
|
A:HEC1520
|
4.3
|
22.4
|
1.0
|
C2C
|
A:HEC1520
|
4.3
|
20.4
|
1.0
|
O
|
A:HOH2238
|
4.3
|
23.6
|
1.0
|
C3C
|
A:HEC1520
|
4.3
|
19.8
|
1.0
|
CD
|
A:LYS150
|
4.5
|
22.1
|
1.0
|
CE1
|
A:HIS299
|
4.8
|
20.6
|
1.0
|
CMD
|
A:HEC1522
|
4.9
|
17.2
|
1.0
|
O
|
A:HOH2061
|
4.9
|
24.4
|
1.0
|
|
Iron binding site 2 out
of 10 in 1oah
Go back to
Iron Binding Sites List in 1oah
Iron binding site 2 out
of 10 in the Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1521
b:26.2
occ:1.00
|
FE
|
A:HEC1521
|
0.0
|
26.2
|
1.0
|
NB
|
A:HEC1521
|
2.0
|
25.3
|
1.0
|
NA
|
A:HEC1521
|
2.0
|
26.4
|
1.0
|
ND
|
A:HEC1521
|
2.0
|
25.1
|
1.0
|
NE2
|
A:HIS192
|
2.0
|
25.0
|
1.0
|
NE2
|
A:HIS335
|
2.0
|
23.9
|
1.0
|
NC
|
A:HEC1521
|
2.1
|
24.8
|
1.0
|
C1B
|
A:HEC1521
|
3.0
|
26.0
|
1.0
|
CD2
|
A:HIS335
|
3.0
|
23.4
|
1.0
|
CE1
|
A:HIS192
|
3.0
|
24.9
|
1.0
|
C4A
|
A:HEC1521
|
3.0
|
26.2
|
1.0
|
CD2
|
A:HIS192
|
3.0
|
25.1
|
1.0
|
C1D
|
A:HEC1521
|
3.0
|
25.1
|
1.0
|
C4D
|
A:HEC1521
|
3.0
|
26.2
|
1.0
|
CE1
|
A:HIS335
|
3.0
|
24.3
|
1.0
|
C4B
|
A:HEC1521
|
3.0
|
25.6
|
1.0
|
C1A
|
A:HEC1521
|
3.0
|
26.3
|
1.0
|
C4C
|
A:HEC1521
|
3.1
|
24.2
|
1.0
|
C1C
|
A:HEC1521
|
3.1
|
24.7
|
1.0
|
CHB
|
A:HEC1521
|
3.3
|
26.4
|
1.0
|
CHD
|
A:HEC1521
|
3.4
|
24.6
|
1.0
|
CHA
|
A:HEC1521
|
3.4
|
26.5
|
1.0
|
CHC
|
A:HEC1521
|
3.5
|
24.8
|
1.0
|
ND1
|
A:HIS192
|
4.1
|
25.1
|
1.0
|
ND1
|
A:HIS335
|
4.1
|
23.8
|
1.0
|
CG
|
A:HIS335
|
4.1
|
24.3
|
1.0
|
CG
|
A:HIS192
|
4.2
|
26.1
|
1.0
|
C2B
|
A:HEC1521
|
4.2
|
26.2
|
1.0
|
C3A
|
A:HEC1521
|
4.2
|
26.7
|
1.0
|
C3B
|
A:HEC1521
|
4.2
|
25.5
|
1.0
|
C2A
|
A:HEC1521
|
4.3
|
26.2
|
1.0
|
C2D
|
A:HEC1521
|
4.3
|
25.4
|
1.0
|
C3D
|
A:HEC1521
|
4.3
|
25.5
|
1.0
|
C3C
|
A:HEC1521
|
4.3
|
23.9
|
1.0
|
C2C
|
A:HEC1521
|
4.3
|
23.5
|
1.0
|
CE
|
A:MET322
|
4.6
|
23.3
|
1.0
|
|
Iron binding site 3 out
of 10 in 1oah
Go back to
Iron Binding Sites List in 1oah
Iron binding site 3 out
of 10 in the Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1522
b:19.9
occ:1.00
|
FE
|
A:HEC1522
|
0.0
|
19.9
|
1.0
|
NB
|
A:HEC1522
|
2.0
|
17.1
|
1.0
|
ND
|
A:HEC1522
|
2.0
|
16.5
|
1.0
|
NE2
|
A:HIS234
|
2.0
|
19.7
|
1.0
|
NA
|
A:HEC1522
|
2.0
|
18.0
|
1.0
|
NE2
|
A:HIS118
|
2.0
|
19.7
|
1.0
|
NC
|
A:HEC1522
|
2.1
|
17.9
|
1.0
|
CE1
|
A:HIS234
|
2.9
|
19.8
|
1.0
|
C1D
|
A:HEC1522
|
3.0
|
16.7
|
1.0
|
C1B
|
A:HEC1522
|
3.0
|
18.2
|
1.0
|
CE1
|
A:HIS118
|
3.0
|
19.6
|
1.0
|
C4C
|
A:HEC1522
|
3.0
|
17.9
|
1.0
|
C4D
|
A:HEC1522
|
3.0
|
18.0
|
1.0
|
C4A
|
A:HEC1522
|
3.0
|
17.7
|
1.0
|
CD2
|
A:HIS118
|
3.0
|
19.9
|
1.0
|
C4B
|
A:HEC1522
|
3.0
|
18.5
|
1.0
|
C1A
|
A:HEC1522
|
3.1
|
18.8
|
1.0
|
C1C
|
A:HEC1522
|
3.1
|
17.1
|
1.0
|
CD2
|
A:HIS234
|
3.1
|
19.9
|
1.0
|
CHD
|
A:HEC1522
|
3.3
|
16.0
|
1.0
|
CHB
|
A:HEC1522
|
3.4
|
18.4
|
1.0
|
CHA
|
A:HEC1522
|
3.4
|
18.7
|
1.0
|
CHC
|
A:HEC1522
|
3.5
|
17.7
|
1.0
|
ND1
|
A:HIS234
|
4.0
|
20.1
|
1.0
|
ND1
|
A:HIS118
|
4.1
|
21.8
|
1.0
|
CG
|
A:HIS118
|
4.2
|
21.9
|
1.0
|
CG
|
A:HIS234
|
4.2
|
20.2
|
1.0
|
C2B
|
A:HEC1522
|
4.2
|
17.1
|
1.0
|
C2D
|
A:HEC1522
|
4.2
|
17.1
|
1.0
|
C3B
|
A:HEC1522
|
4.2
|
17.6
|
1.0
|
C3D
|
A:HEC1522
|
4.3
|
17.8
|
1.0
|
C3A
|
A:HEC1522
|
4.3
|
18.9
|
1.0
|
C3C
|
A:HEC1522
|
4.3
|
18.1
|
1.0
|
C2A
|
A:HEC1522
|
4.3
|
19.6
|
1.0
|
C2C
|
A:HEC1522
|
4.3
|
17.9
|
1.0
|
O
|
A:HOH2160
|
4.8
|
23.6
|
1.0
|
|
Iron binding site 4 out
of 10 in 1oah
Go back to
Iron Binding Sites List in 1oah
Iron binding site 4 out
of 10 in the Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1523
b:19.8
occ:1.00
|
FE
|
A:HEC1523
|
0.0
|
19.8
|
1.0
|
NB
|
A:HEC1523
|
2.0
|
19.0
|
1.0
|
NC
|
A:HEC1523
|
2.0
|
18.8
|
1.0
|
NA
|
A:HEC1523
|
2.0
|
18.0
|
1.0
|
NE2
|
A:HIS434
|
2.0
|
19.4
|
1.0
|
NE2
|
A:HIS321
|
2.0
|
21.1
|
1.0
|
ND
|
A:HEC1523
|
2.1
|
19.3
|
1.0
|
CE1
|
A:HIS434
|
2.8
|
18.0
|
1.0
|
CE1
|
A:HIS321
|
2.9
|
21.0
|
1.0
|
C4B
|
A:HEC1523
|
3.0
|
19.6
|
1.0
|
C1C
|
A:HEC1523
|
3.0
|
18.8
|
1.0
|
C1B
|
A:HEC1523
|
3.0
|
19.1
|
1.0
|
C4A
|
A:HEC1523
|
3.0
|
18.4
|
1.0
|
C1A
|
A:HEC1523
|
3.0
|
17.8
|
1.0
|
C4C
|
A:HEC1523
|
3.1
|
20.0
|
1.0
|
C4D
|
A:HEC1523
|
3.1
|
18.2
|
1.0
|
C1D
|
A:HEC1523
|
3.1
|
19.2
|
1.0
|
CD2
|
A:HIS321
|
3.1
|
21.2
|
1.0
|
CD2
|
A:HIS434
|
3.2
|
18.8
|
1.0
|
CHC
|
A:HEC1523
|
3.3
|
18.9
|
1.0
|
CHB
|
A:HEC1523
|
3.4
|
18.8
|
1.0
|
CHA
|
A:HEC1523
|
3.4
|
17.9
|
1.0
|
CHD
|
A:HEC1523
|
3.5
|
20.2
|
1.0
|
ND1
|
A:HIS434
|
4.0
|
18.3
|
1.0
|
ND1
|
A:HIS321
|
4.1
|
20.7
|
1.0
|
C3B
|
A:HEC1523
|
4.2
|
19.3
|
1.0
|
C2B
|
A:HEC1523
|
4.2
|
19.5
|
1.0
|
CG
|
A:HIS434
|
4.2
|
18.8
|
1.0
|
CG
|
A:HIS321
|
4.2
|
22.6
|
1.0
|
C2C
|
A:HEC1523
|
4.2
|
19.0
|
1.0
|
C3A
|
A:HEC1523
|
4.2
|
17.2
|
1.0
|
C2A
|
A:HEC1523
|
4.3
|
17.3
|
1.0
|
C3C
|
A:HEC1523
|
4.3
|
18.6
|
1.0
|
C3D
|
A:HEC1523
|
4.3
|
18.7
|
1.0
|
C2D
|
A:HEC1523
|
4.3
|
18.6
|
1.0
|
|
Iron binding site 5 out
of 10 in 1oah
Go back to
Iron Binding Sites List in 1oah
Iron binding site 5 out
of 10 in the Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1524
b:21.2
occ:1.00
|
FE
|
A:HEC1524
|
0.0
|
21.2
|
1.0
|
ND
|
A:HEC1524
|
2.0
|
20.7
|
1.0
|
NC
|
A:HEC1524
|
2.0
|
21.0
|
1.0
|
NB
|
A:HEC1524
|
2.0
|
20.6
|
1.0
|
NE2
|
A:HIS310
|
2.0
|
22.5
|
1.0
|
NE2
|
A:HIS353
|
2.0
|
27.0
|
1.0
|
NA
|
A:HEC1524
|
2.1
|
22.1
|
1.0
|
CE1
|
A:HIS353
|
2.9
|
28.1
|
1.0
|
CD2
|
A:HIS310
|
3.0
|
21.6
|
1.0
|
C4D
|
A:HEC1524
|
3.0
|
22.6
|
1.0
|
CE1
|
A:HIS310
|
3.0
|
22.1
|
1.0
|
C1D
|
A:HEC1524
|
3.0
|
21.9
|
1.0
|
C1C
|
A:HEC1524
|
3.0
|
21.4
|
1.0
|
C4B
|
A:HEC1524
|
3.0
|
21.0
|
1.0
|
C1B
|
A:HEC1524
|
3.1
|
21.2
|
1.0
|
C4C
|
A:HEC1524
|
3.1
|
21.8
|
1.0
|
C1A
|
A:HEC1524
|
3.1
|
21.9
|
1.0
|
C4A
|
A:HEC1524
|
3.1
|
21.0
|
1.0
|
CD2
|
A:HIS353
|
3.1
|
28.7
|
1.0
|
CHC
|
A:HEC1524
|
3.4
|
21.3
|
1.0
|
CHA
|
A:HEC1524
|
3.4
|
22.6
|
1.0
|
CHD
|
A:HEC1524
|
3.4
|
21.5
|
1.0
|
CHB
|
A:HEC1524
|
3.5
|
21.5
|
1.0
|
ND1
|
A:HIS353
|
4.1
|
29.0
|
1.0
|
ND1
|
A:HIS310
|
4.1
|
22.5
|
1.0
|
CG
|
A:HIS310
|
4.1
|
22.0
|
1.0
|
CG
|
A:HIS353
|
4.2
|
30.2
|
1.0
|
C3D
|
A:HEC1524
|
4.2
|
22.6
|
1.0
|
C2D
|
A:HEC1524
|
4.2
|
22.2
|
1.0
|
C2C
|
A:HEC1524
|
4.3
|
21.9
|
1.0
|
C3B
|
A:HEC1524
|
4.3
|
22.0
|
1.0
|
C2B
|
A:HEC1524
|
4.3
|
21.9
|
1.0
|
C3C
|
A:HEC1524
|
4.3
|
22.2
|
1.0
|
C2A
|
A:HEC1524
|
4.3
|
22.3
|
1.0
|
C3A
|
A:HEC1524
|
4.3
|
22.1
|
1.0
|
CBC
|
A:HEC1523
|
4.6
|
18.3
|
1.0
|
|
Iron binding site 6 out
of 10 in 1oah
Go back to
Iron Binding Sites List in 1oah
Iron binding site 6 out
of 10 in the Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1520
b:20.6
occ:1.00
|
FE
|
B:HEC1520
|
0.0
|
20.6
|
1.0
|
NC
|
B:HEC1520
|
2.0
|
19.9
|
1.0
|
NB
|
B:HEC1520
|
2.0
|
21.7
|
1.0
|
NA
|
B:HEC1520
|
2.0
|
21.5
|
1.0
|
ND
|
B:HEC1520
|
2.0
|
20.0
|
1.0
|
NZ
|
B:LYS150
|
2.1
|
20.4
|
1.0
|
O
|
B:HOH2147
|
2.1
|
21.4
|
1.0
|
C4B
|
B:HEC1520
|
3.0
|
21.8
|
1.0
|
CE
|
B:LYS150
|
3.0
|
21.6
|
1.0
|
C4D
|
B:HEC1520
|
3.0
|
20.1
|
1.0
|
C1B
|
B:HEC1520
|
3.0
|
21.8
|
1.0
|
C1C
|
B:HEC1520
|
3.0
|
20.5
|
1.0
|
C1A
|
B:HEC1520
|
3.0
|
21.8
|
1.0
|
C4C
|
B:HEC1520
|
3.1
|
20.0
|
1.0
|
C4A
|
B:HEC1520
|
3.1
|
21.9
|
1.0
|
C1D
|
B:HEC1520
|
3.1
|
19.5
|
1.0
|
CHC
|
B:HEC1520
|
3.4
|
20.9
|
1.0
|
CHA
|
B:HEC1520
|
3.4
|
21.2
|
1.0
|
CHB
|
B:HEC1520
|
3.4
|
21.9
|
1.0
|
CHD
|
B:HEC1520
|
3.4
|
19.9
|
1.0
|
NE2
|
B:HIS299
|
4.1
|
21.0
|
1.0
|
O
|
B:HOH2074
|
4.2
|
21.9
|
1.0
|
C3B
|
B:HEC1520
|
4.2
|
22.4
|
1.0
|
C2B
|
B:HEC1520
|
4.2
|
22.1
|
1.0
|
C2C
|
B:HEC1520
|
4.3
|
20.5
|
1.0
|
C3D
|
B:HEC1520
|
4.3
|
19.6
|
1.0
|
C2A
|
B:HEC1520
|
4.3
|
21.2
|
1.0
|
C3C
|
B:HEC1520
|
4.3
|
20.0
|
1.0
|
C3A
|
B:HEC1520
|
4.3
|
22.2
|
1.0
|
C2D
|
B:HEC1520
|
4.3
|
19.6
|
1.0
|
O
|
B:HOH2113
|
4.3
|
23.2
|
1.0
|
O
|
B:HOH2250
|
4.4
|
23.5
|
1.0
|
CD
|
B:LYS150
|
4.4
|
21.9
|
1.0
|
O
|
B:HOH2065
|
4.8
|
24.1
|
1.0
|
CE1
|
B:HIS299
|
4.8
|
20.3
|
1.0
|
CMD
|
B:HEC1522
|
4.9
|
17.1
|
1.0
|
|
Iron binding site 7 out
of 10 in 1oah
Go back to
Iron Binding Sites List in 1oah
Iron binding site 7 out
of 10 in the Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1521
b:23.2
occ:1.00
|
FE
|
B:HEC1521
|
0.0
|
23.2
|
1.0
|
NC
|
B:HEC1521
|
2.0
|
24.8
|
1.0
|
NB
|
B:HEC1521
|
2.0
|
25.3
|
1.0
|
NE2
|
B:HIS335
|
2.0
|
23.8
|
1.0
|
NE2
|
B:HIS192
|
2.0
|
25.0
|
1.0
|
ND
|
B:HEC1521
|
2.0
|
25.0
|
1.0
|
NA
|
B:HEC1521
|
2.1
|
26.1
|
1.0
|
CD2
|
B:HIS335
|
3.0
|
23.5
|
1.0
|
C1B
|
B:HEC1521
|
3.0
|
25.8
|
1.0
|
C4C
|
B:HEC1521
|
3.0
|
24.3
|
1.0
|
C1D
|
B:HEC1521
|
3.0
|
25.0
|
1.0
|
CE1
|
B:HIS192
|
3.0
|
24.7
|
1.0
|
CD2
|
B:HIS192
|
3.0
|
24.9
|
1.0
|
C4B
|
B:HEC1521
|
3.0
|
25.1
|
1.0
|
CE1
|
B:HIS335
|
3.0
|
24.4
|
1.0
|
C1C
|
B:HEC1521
|
3.0
|
24.7
|
1.0
|
C4A
|
B:HEC1521
|
3.0
|
26.3
|
1.0
|
C4D
|
B:HEC1521
|
3.1
|
25.9
|
1.0
|
C1A
|
B:HEC1521
|
3.1
|
25.9
|
1.0
|
CHD
|
B:HEC1521
|
3.4
|
24.6
|
1.0
|
CHB
|
B:HEC1521
|
3.4
|
26.2
|
1.0
|
CHC
|
B:HEC1521
|
3.4
|
24.4
|
1.0
|
CHA
|
B:HEC1521
|
3.5
|
26.5
|
1.0
|
CG
|
B:HIS335
|
4.1
|
24.2
|
1.0
|
ND1
|
B:HIS192
|
4.1
|
25.2
|
1.0
|
ND1
|
B:HIS335
|
4.1
|
23.8
|
1.0
|
CG
|
B:HIS192
|
4.2
|
25.9
|
1.0
|
C2B
|
B:HEC1521
|
4.2
|
26.4
|
1.0
|
C3C
|
B:HEC1521
|
4.2
|
23.6
|
1.0
|
C3B
|
B:HEC1521
|
4.2
|
25.4
|
1.0
|
C2C
|
B:HEC1521
|
4.2
|
23.6
|
1.0
|
C2D
|
B:HEC1521
|
4.3
|
25.3
|
1.0
|
C3A
|
B:HEC1521
|
4.3
|
26.6
|
1.0
|
C3D
|
B:HEC1521
|
4.3
|
25.5
|
1.0
|
C2A
|
B:HEC1521
|
4.3
|
26.3
|
1.0
|
CE
|
B:MET322
|
4.5
|
23.5
|
1.0
|
|
Iron binding site 8 out
of 10 in 1oah
Go back to
Iron Binding Sites List in 1oah
Iron binding site 8 out
of 10 in the Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1522
b:17.9
occ:1.00
|
FE
|
B:HEC1522
|
0.0
|
17.9
|
1.0
|
NE2
|
B:HIS234
|
2.0
|
19.3
|
1.0
|
NA
|
B:HEC1522
|
2.0
|
17.9
|
1.0
|
NB
|
B:HEC1522
|
2.0
|
17.1
|
1.0
|
ND
|
B:HEC1522
|
2.0
|
16.8
|
1.0
|
NE2
|
B:HIS118
|
2.0
|
19.6
|
1.0
|
NC
|
B:HEC1522
|
2.1
|
17.5
|
1.0
|
CE1
|
B:HIS234
|
2.9
|
19.6
|
1.0
|
C4C
|
B:HEC1522
|
3.0
|
17.7
|
1.0
|
C1D
|
B:HEC1522
|
3.0
|
16.5
|
1.0
|
CD2
|
B:HIS118
|
3.0
|
19.5
|
1.0
|
C1B
|
B:HEC1522
|
3.0
|
17.9
|
1.0
|
C4A
|
B:HEC1522
|
3.0
|
17.7
|
1.0
|
CE1
|
B:HIS118
|
3.1
|
19.3
|
1.0
|
C4D
|
B:HEC1522
|
3.1
|
18.1
|
1.0
|
C1A
|
B:HEC1522
|
3.1
|
18.6
|
1.0
|
C4B
|
B:HEC1522
|
3.1
|
18.0
|
1.0
|
CD2
|
B:HIS234
|
3.1
|
19.5
|
1.0
|
C1C
|
B:HEC1522
|
3.2
|
17.1
|
1.0
|
CHD
|
B:HEC1522
|
3.3
|
16.1
|
1.0
|
CHB
|
B:HEC1522
|
3.4
|
18.2
|
1.0
|
CHA
|
B:HEC1522
|
3.4
|
18.4
|
1.0
|
CHC
|
B:HEC1522
|
3.6
|
17.6
|
1.0
|
ND1
|
B:HIS234
|
4.0
|
20.3
|
1.0
|
ND1
|
B:HIS118
|
4.1
|
21.4
|
1.0
|
CG
|
B:HIS118
|
4.2
|
21.8
|
1.0
|
CG
|
B:HIS234
|
4.2
|
20.2
|
1.0
|
C2D
|
B:HEC1522
|
4.2
|
17.0
|
1.0
|
C2B
|
B:HEC1522
|
4.2
|
17.4
|
1.0
|
C3A
|
B:HEC1522
|
4.3
|
18.5
|
1.0
|
C3C
|
B:HEC1522
|
4.3
|
18.0
|
1.0
|
C3D
|
B:HEC1522
|
4.3
|
17.9
|
1.0
|
C2A
|
B:HEC1522
|
4.3
|
19.5
|
1.0
|
C3B
|
B:HEC1522
|
4.3
|
17.8
|
1.0
|
C2C
|
B:HEC1522
|
4.3
|
18.0
|
1.0
|
O
|
B:HOH2169
|
4.7
|
23.4
|
1.0
|
|
Iron binding site 9 out
of 10 in 1oah
Go back to
Iron Binding Sites List in 1oah
Iron binding site 9 out
of 10 in the Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1523
b:18.9
occ:1.00
|
FE
|
B:HEC1523
|
0.0
|
18.9
|
1.0
|
NA
|
B:HEC1523
|
2.0
|
17.9
|
1.0
|
NB
|
B:HEC1523
|
2.0
|
19.1
|
1.0
|
NE2
|
B:HIS321
|
2.0
|
20.9
|
1.0
|
NC
|
B:HEC1523
|
2.0
|
19.3
|
1.0
|
NE2
|
B:HIS434
|
2.0
|
19.2
|
1.0
|
ND
|
B:HEC1523
|
2.0
|
19.4
|
1.0
|
CE1
|
B:HIS434
|
2.8
|
18.2
|
1.0
|
CE1
|
B:HIS321
|
2.9
|
20.9
|
1.0
|
C4B
|
B:HEC1523
|
3.0
|
19.7
|
1.0
|
C1A
|
B:HEC1523
|
3.0
|
17.7
|
1.0
|
C1B
|
B:HEC1523
|
3.0
|
19.0
|
1.0
|
C4A
|
B:HEC1523
|
3.0
|
18.1
|
1.0
|
C1C
|
B:HEC1523
|
3.0
|
19.0
|
1.0
|
C4D
|
B:HEC1523
|
3.0
|
17.9
|
1.0
|
C1D
|
B:HEC1523
|
3.1
|
19.1
|
1.0
|
C4C
|
B:HEC1523
|
3.1
|
20.0
|
1.0
|
CD2
|
B:HIS321
|
3.1
|
21.3
|
1.0
|
CD2
|
B:HIS434
|
3.2
|
18.4
|
1.0
|
CHA
|
B:HEC1523
|
3.4
|
17.8
|
1.0
|
CHC
|
B:HEC1523
|
3.4
|
19.0
|
1.0
|
CHB
|
B:HEC1523
|
3.4
|
18.6
|
1.0
|
CHD
|
B:HEC1523
|
3.4
|
20.1
|
1.0
|
ND1
|
B:HIS434
|
4.0
|
18.4
|
1.0
|
ND1
|
B:HIS321
|
4.0
|
20.7
|
1.0
|
CG
|
B:HIS321
|
4.2
|
22.6
|
1.0
|
C3B
|
B:HEC1523
|
4.2
|
19.3
|
1.0
|
CG
|
B:HIS434
|
4.2
|
18.7
|
1.0
|
C2B
|
B:HEC1523
|
4.2
|
19.3
|
1.0
|
C2A
|
B:HEC1523
|
4.2
|
17.6
|
1.0
|
C3A
|
B:HEC1523
|
4.2
|
17.1
|
1.0
|
C2C
|
B:HEC1523
|
4.3
|
18.8
|
1.0
|
C3D
|
B:HEC1523
|
4.3
|
18.5
|
1.0
|
C3C
|
B:HEC1523
|
4.3
|
18.7
|
1.0
|
C2D
|
B:HEC1523
|
4.3
|
18.6
|
1.0
|
|
Iron binding site 10 out
of 10 in 1oah
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Iron Binding Sites List in 1oah
Iron binding site 10 out
of 10 in the Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774: the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1524
b:21.4
occ:1.00
|
FE
|
B:HEC1524
|
0.0
|
21.4
|
1.0
|
ND
|
B:HEC1524
|
2.0
|
20.7
|
1.0
|
NE2
|
B:HIS310
|
2.0
|
22.8
|
1.0
|
NB
|
B:HEC1524
|
2.0
|
20.8
|
1.0
|
NC
|
B:HEC1524
|
2.0
|
21.0
|
1.0
|
NE2
|
B:HIS353
|
2.0
|
27.0
|
1.0
|
NA
|
B:HEC1524
|
2.1
|
22.1
|
1.0
|
CE1
|
B:HIS353
|
3.0
|
28.0
|
1.0
|
C4D
|
B:HEC1524
|
3.0
|
22.5
|
1.0
|
CD2
|
B:HIS310
|
3.0
|
21.7
|
1.0
|
CE1
|
B:HIS310
|
3.0
|
22.3
|
1.0
|
C1D
|
B:HEC1524
|
3.0
|
21.9
|
1.0
|
C1C
|
B:HEC1524
|
3.0
|
21.2
|
1.0
|
C4B
|
B:HEC1524
|
3.0
|
21.3
|
1.0
|
C1A
|
B:HEC1524
|
3.1
|
21.9
|
1.0
|
C1B
|
B:HEC1524
|
3.1
|
21.1
|
1.0
|
C4C
|
B:HEC1524
|
3.1
|
21.8
|
1.0
|
CD2
|
B:HIS353
|
3.1
|
28.9
|
1.0
|
C4A
|
B:HEC1524
|
3.1
|
20.9
|
1.0
|
CHA
|
B:HEC1524
|
3.4
|
22.7
|
1.0
|
CHC
|
B:HEC1524
|
3.4
|
21.0
|
1.0
|
CHD
|
B:HEC1524
|
3.4
|
21.5
|
1.0
|
CHB
|
B:HEC1524
|
3.5
|
21.6
|
1.0
|
ND1
|
B:HIS353
|
4.1
|
29.0
|
1.0
|
ND1
|
B:HIS310
|
4.1
|
22.5
|
1.0
|
CG
|
B:HIS310
|
4.1
|
21.9
|
1.0
|
CG
|
B:HIS353
|
4.2
|
30.1
|
1.0
|
C3D
|
B:HEC1524
|
4.2
|
22.5
|
1.0
|
C2D
|
B:HEC1524
|
4.2
|
22.1
|
1.0
|
C2C
|
B:HEC1524
|
4.3
|
21.7
|
1.0
|
C3B
|
B:HEC1524
|
4.3
|
22.0
|
1.0
|
C2B
|
B:HEC1524
|
4.3
|
21.9
|
1.0
|
C2A
|
B:HEC1524
|
4.3
|
22.4
|
1.0
|
C3C
|
B:HEC1524
|
4.3
|
22.1
|
1.0
|
C3A
|
B:HEC1524
|
4.3
|
22.0
|
1.0
|
CBC
|
B:HEC1523
|
4.6
|
17.8
|
1.0
|
|
Reference:
C.A.Cunha,
S.Macieira,
J.M.Dias,
G.Almeida,
L.L.Goncalves,
C.Costa,
J.Lampreia,
R.Huber,
J.J.G.Moura,
I.Moura,
M.J.Romao.
Cytochrome C Nitrite Reductase From Desulfovibrio Desulfuricans Atcc 27774. the Relevance of the Two Calcium Sites in the Structure of the Catalytic Subunit (Nrfa) J.Biol.Chem. V. 278 17455 2003.
ISSN: ISSN 0021-9258
PubMed: 12618432
DOI: 10.1074/JBC.M211777200
Page generated: Sat Aug 3 12:15:08 2024
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