Iron in PDB 1ofy: Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5
Protein crystallography data
The structure of Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5, PDB code: 1ofy
was solved by
I.Bento,
V.H.Teixeira,
A.M.Baptista,
C.M.Soares,
P.M.Matias,
M.A.Carrondo,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
25.0 /
2.0
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
60.400,
105.660,
80.940,
90.00,
103.35,
90.00
|
|
R / Rfree (%)
|
21.51 /
27.51
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
18;
Binding sites:
The binding sites of Iron atom in the Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5
(pdb code 1ofy). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 18 binding sites of Iron where determined in the
Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5, PDB code: 1ofy:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 18 in 1ofy
Go back to
Iron Binding Sites List in 1ofy
Iron binding site 1 out
of 18 in the Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1293
b:17.6
occ:1.00
|
FE
|
A:HEC1293
|
0.0
|
17.6
|
1.0
|
|
NE2
|
A:HIS51
|
1.9
|
16.5
|
1.0
|
|
NE2
|
A:HIS37
|
1.9
|
14.4
|
1.0
|
|
NA
|
A:HEC1293
|
2.0
|
26.5
|
1.0
|
|
NC
|
A:HEC1293
|
2.0
|
21.0
|
1.0
|
|
ND
|
A:HEC1293
|
2.0
|
21.8
|
1.0
|
|
NB
|
A:HEC1293
|
2.0
|
22.2
|
1.0
|
|
CE1
|
A:HIS51
|
2.7
|
18.8
|
1.0
|
|
CE1
|
A:HIS37
|
2.9
|
15.9
|
1.0
|
|
C4A
|
A:HEC1293
|
3.0
|
25.7
|
1.0
|
|
C1A
|
A:HEC1293
|
3.0
|
26.8
|
1.0
|
|
C4C
|
A:HEC1293
|
3.0
|
20.2
|
1.0
|
|
C4D
|
A:HEC1293
|
3.0
|
23.1
|
1.0
|
|
C1B
|
A:HEC1293
|
3.0
|
21.9
|
1.0
|
|
CD2
|
A:HIS37
|
3.0
|
14.7
|
1.0
|
|
C1C
|
A:HEC1293
|
3.0
|
19.4
|
1.0
|
|
C1D
|
A:HEC1293
|
3.1
|
21.0
|
1.0
|
|
C4B
|
A:HEC1293
|
3.1
|
22.7
|
1.0
|
|
CD2
|
A:HIS51
|
3.1
|
19.6
|
1.0
|
|
CHB
|
A:HEC1293
|
3.3
|
22.4
|
1.0
|
|
CHA
|
A:HEC1293
|
3.4
|
24.6
|
1.0
|
|
CHD
|
A:HEC1293
|
3.4
|
19.4
|
1.0
|
|
CHC
|
A:HEC1293
|
3.4
|
21.7
|
1.0
|
|
ND1
|
A:HIS51
|
3.9
|
19.3
|
1.0
|
|
ND1
|
A:HIS37
|
4.0
|
14.7
|
1.0
|
|
CG
|
A:HIS37
|
4.1
|
14.9
|
1.0
|
|
CG
|
A:HIS51
|
4.1
|
20.1
|
1.0
|
|
C3A
|
A:HEC1293
|
4.2
|
27.4
|
1.0
|
|
C2A
|
A:HEC1293
|
4.2
|
27.8
|
1.0
|
|
C3C
|
A:HEC1293
|
4.2
|
19.3
|
1.0
|
|
C3D
|
A:HEC1293
|
4.3
|
22.9
|
1.0
|
|
C2C
|
A:HEC1293
|
4.3
|
19.2
|
1.0
|
|
C2B
|
A:HEC1293
|
4.3
|
21.3
|
1.0
|
|
C2D
|
A:HEC1293
|
4.3
|
19.9
|
1.0
|
|
C3B
|
A:HEC1293
|
4.3
|
19.8
|
1.0
|
|
CB
|
A:ALA10
|
5.0
|
20.8
|
1.0
|
|
Iron binding site 2 out
of 18 in 1ofy
Go back to
Iron Binding Sites List in 1ofy
Iron binding site 2 out
of 18 in the Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1294
b:22.1
occ:1.00
|
FE
|
A:HEC1294
|
0.0
|
22.1
|
1.0
|
|
ND
|
A:HEC1294
|
2.0
|
24.4
|
1.0
|
|
NB
|
A:HEC1294
|
2.0
|
20.7
|
1.0
|
|
NC
|
A:HEC1294
|
2.0
|
27.5
|
1.0
|
|
NA
|
A:HEC1294
|
2.0
|
18.3
|
1.0
|
|
NE2
|
A:HIS52
|
2.1
|
24.7
|
1.0
|
|
NE2
|
A:HIS63
|
2.1
|
20.0
|
1.0
|
|
C1D
|
A:HEC1294
|
3.0
|
25.7
|
1.0
|
|
CE1
|
A:HIS52
|
3.0
|
24.8
|
1.0
|
|
C4C
|
A:HEC1294
|
3.0
|
26.8
|
1.0
|
|
C1B
|
A:HEC1294
|
3.0
|
21.2
|
1.0
|
|
C4A
|
A:HEC1294
|
3.0
|
17.2
|
1.0
|
|
CE1
|
A:HIS63
|
3.0
|
19.4
|
1.0
|
|
C4B
|
A:HEC1294
|
3.1
|
23.1
|
1.0
|
|
CD2
|
A:HIS63
|
3.1
|
20.0
|
1.0
|
|
C1C
|
A:HEC1294
|
3.1
|
26.3
|
1.0
|
|
C4D
|
A:HEC1294
|
3.1
|
25.6
|
1.0
|
|
C1A
|
A:HEC1294
|
3.1
|
21.6
|
1.0
|
|
CD2
|
A:HIS52
|
3.1
|
23.5
|
1.0
|
|
CHD
|
A:HEC1294
|
3.3
|
25.6
|
1.0
|
|
CHB
|
A:HEC1294
|
3.4
|
16.3
|
1.0
|
|
CHC
|
A:HEC1294
|
3.5
|
25.1
|
1.0
|
|
CHA
|
A:HEC1294
|
3.5
|
24.5
|
1.0
|
|
ND1
|
A:HIS52
|
4.1
|
25.1
|
1.0
|
|
ND1
|
A:HIS63
|
4.2
|
19.4
|
1.0
|
|
CG
|
A:HIS63
|
4.2
|
19.9
|
1.0
|
|
C2D
|
A:HEC1294
|
4.2
|
27.7
|
1.0
|
|
CG
|
A:HIS52
|
4.2
|
24.6
|
1.0
|
|
C3C
|
A:HEC1294
|
4.2
|
26.9
|
1.0
|
|
C2B
|
A:HEC1294
|
4.3
|
24.3
|
1.0
|
|
C3D
|
A:HEC1294
|
4.3
|
27.2
|
1.0
|
|
C3A
|
A:HEC1294
|
4.3
|
17.1
|
1.0
|
|
C3B
|
A:HEC1294
|
4.3
|
22.3
|
1.0
|
|
C2C
|
A:HEC1294
|
4.3
|
26.6
|
1.0
|
|
C2A
|
A:HEC1294
|
4.3
|
20.5
|
1.0
|
|
CG2
|
A:THR53
|
4.9
|
34.1
|
1.0
|
|
Iron binding site 3 out
of 18 in 1ofy
Go back to
Iron Binding Sites List in 1ofy
Iron binding site 3 out
of 18 in the Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1295
b:16.8
occ:1.00
|
FE
|
A:HEC1295
|
0.0
|
16.8
|
1.0
|
|
NE2
|
A:HIS40
|
2.0
|
14.1
|
1.0
|
|
NA
|
A:HEC1295
|
2.0
|
15.2
|
1.0
|
|
NE2
|
A:HIS101
|
2.0
|
13.3
|
1.0
|
|
ND
|
A:HEC1295
|
2.0
|
15.5
|
1.0
|
|
NC
|
A:HEC1295
|
2.0
|
18.2
|
1.0
|
|
NB
|
A:HEC1295
|
2.0
|
15.8
|
1.0
|
|
CD2
|
A:HIS40
|
2.9
|
14.3
|
1.0
|
|
CE1
|
A:HIS101
|
2.9
|
13.8
|
1.0
|
|
C4A
|
A:HEC1295
|
3.0
|
15.6
|
1.0
|
|
C4C
|
A:HEC1295
|
3.0
|
17.9
|
1.0
|
|
C1A
|
A:HEC1295
|
3.0
|
15.6
|
1.0
|
|
C1D
|
A:HEC1295
|
3.0
|
14.9
|
1.0
|
|
C1B
|
A:HEC1295
|
3.0
|
14.8
|
1.0
|
|
C4D
|
A:HEC1295
|
3.0
|
16.4
|
1.0
|
|
C4B
|
A:HEC1295
|
3.0
|
13.2
|
1.0
|
|
CE1
|
A:HIS40
|
3.0
|
16.9
|
1.0
|
|
C1C
|
A:HEC1295
|
3.1
|
16.2
|
1.0
|
|
CD2
|
A:HIS101
|
3.1
|
14.3
|
1.0
|
|
CHD
|
A:HEC1295
|
3.4
|
14.6
|
1.0
|
|
CHB
|
A:HEC1295
|
3.4
|
14.3
|
1.0
|
|
CHA
|
A:HEC1295
|
3.4
|
15.1
|
1.0
|
|
CHC
|
A:HEC1295
|
3.4
|
11.9
|
1.0
|
|
ND1
|
A:HIS101
|
4.1
|
13.6
|
1.0
|
|
CG
|
A:HIS40
|
4.1
|
17.0
|
1.0
|
|
ND1
|
A:HIS40
|
4.1
|
17.6
|
1.0
|
|
CG
|
A:HIS101
|
4.2
|
13.6
|
1.0
|
|
C3A
|
A:HEC1295
|
4.2
|
17.8
|
1.0
|
|
C2A
|
A:HEC1295
|
4.2
|
17.5
|
1.0
|
|
C2D
|
A:HEC1295
|
4.3
|
17.0
|
1.0
|
|
C3D
|
A:HEC1295
|
4.3
|
18.6
|
1.0
|
|
C3C
|
A:HEC1295
|
4.3
|
17.9
|
1.0
|
|
C2B
|
A:HEC1295
|
4.3
|
15.4
|
1.0
|
|
C3B
|
A:HEC1295
|
4.3
|
14.6
|
1.0
|
|
C2C
|
A:HEC1295
|
4.3
|
16.7
|
1.0
|
|
CE1
|
A:PHE35
|
4.8
|
17.9
|
1.0
|
|
CD1
|
A:LEU213
|
4.9
|
17.2
|
1.0
|
|
Iron binding site 4 out
of 18 in 1ofy
Go back to
Iron Binding Sites List in 1ofy
Iron binding site 4 out
of 18 in the Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1296
b:15.7
occ:1.00
|
FE
|
A:HEC1296
|
0.0
|
15.7
|
1.0
|
|
NE2
|
A:HIS218
|
1.9
|
11.4
|
1.0
|
|
NE2
|
A:HIS115
|
1.9
|
10.4
|
1.0
|
|
ND
|
A:HEC1296
|
2.0
|
20.1
|
1.0
|
|
NA
|
A:HEC1296
|
2.0
|
17.9
|
1.0
|
|
NB
|
A:HEC1296
|
2.0
|
23.2
|
1.0
|
|
NC
|
A:HEC1296
|
2.0
|
20.5
|
1.0
|
|
CE1
|
A:HIS218
|
2.8
|
15.1
|
1.0
|
|
CE1
|
A:HIS115
|
2.9
|
10.8
|
1.0
|
|
C1B
|
A:HEC1296
|
3.0
|
21.7
|
1.0
|
|
C4A
|
A:HEC1296
|
3.0
|
19.3
|
1.0
|
|
C4C
|
A:HEC1296
|
3.0
|
19.4
|
1.0
|
|
CD2
|
A:HIS115
|
3.0
|
12.4
|
1.0
|
|
C1D
|
A:HEC1296
|
3.0
|
18.8
|
1.0
|
|
CD2
|
A:HIS218
|
3.1
|
13.1
|
1.0
|
|
C4D
|
A:HEC1296
|
3.1
|
20.5
|
1.0
|
|
C1C
|
A:HEC1296
|
3.1
|
20.8
|
1.0
|
|
C4B
|
A:HEC1296
|
3.1
|
21.9
|
1.0
|
|
C1A
|
A:HEC1296
|
3.1
|
19.8
|
1.0
|
|
CHB
|
A:HEC1296
|
3.3
|
19.2
|
1.0
|
|
CHD
|
A:HEC1296
|
3.4
|
16.6
|
1.0
|
|
CHC
|
A:HEC1296
|
3.4
|
20.0
|
1.0
|
|
CHA
|
A:HEC1296
|
3.5
|
19.9
|
1.0
|
|
ND1
|
A:HIS218
|
4.0
|
13.8
|
1.0
|
|
ND1
|
A:HIS115
|
4.0
|
8.7
|
1.0
|
|
CG
|
A:HIS218
|
4.1
|
13.2
|
1.0
|
|
CG
|
A:HIS115
|
4.1
|
11.3
|
1.0
|
|
C2B
|
A:HEC1296
|
4.2
|
23.3
|
1.0
|
|
C3C
|
A:HEC1296
|
4.3
|
18.4
|
1.0
|
|
C3A
|
A:HEC1296
|
4.3
|
19.7
|
1.0
|
|
C2D
|
A:HEC1296
|
4.3
|
20.0
|
1.0
|
|
C2C
|
A:HEC1296
|
4.3
|
20.0
|
1.0
|
|
C3B
|
A:HEC1296
|
4.3
|
21.8
|
1.0
|
|
C3D
|
A:HEC1296
|
4.3
|
20.2
|
1.0
|
|
C2A
|
A:HEC1296
|
4.3
|
20.1
|
1.0
|
|
Iron binding site 5 out
of 18 in 1ofy
Go back to
Iron Binding Sites List in 1ofy
Iron binding site 5 out
of 18 in the Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1297
b:17.6
occ:1.00
|
FE
|
A:HEC1297
|
0.0
|
17.6
|
1.0
|
|
NE2
|
A:HIS131
|
1.9
|
12.9
|
1.0
|
|
NE2
|
A:HIS81
|
1.9
|
12.6
|
1.0
|
|
NC
|
A:HEC1297
|
2.0
|
15.5
|
1.0
|
|
NB
|
A:HEC1297
|
2.0
|
19.6
|
1.0
|
|
ND
|
A:HEC1297
|
2.0
|
18.9
|
1.0
|
|
NA
|
A:HEC1297
|
2.0
|
21.6
|
1.0
|
|
CE1
|
A:HIS131
|
2.8
|
14.8
|
1.0
|
|
CE1
|
A:HIS81
|
2.8
|
14.2
|
1.0
|
|
C1D
|
A:HEC1297
|
3.0
|
18.5
|
1.0
|
|
C4A
|
A:HEC1297
|
3.0
|
22.1
|
1.0
|
|
C4C
|
A:HEC1297
|
3.0
|
16.9
|
1.0
|
|
C1C
|
A:HEC1297
|
3.0
|
18.5
|
1.0
|
|
C1B
|
A:HEC1297
|
3.0
|
18.0
|
1.0
|
|
C4B
|
A:HEC1297
|
3.0
|
19.0
|
1.0
|
|
C4D
|
A:HEC1297
|
3.0
|
20.9
|
1.0
|
|
CD2
|
A:HIS81
|
3.1
|
14.1
|
1.0
|
|
CD2
|
A:HIS131
|
3.1
|
13.2
|
1.0
|
|
C1A
|
A:HEC1297
|
3.1
|
20.6
|
1.0
|
|
CHD
|
A:HEC1297
|
3.4
|
18.8
|
1.0
|
|
CHB
|
A:HEC1297
|
3.4
|
20.2
|
1.0
|
|
CHC
|
A:HEC1297
|
3.4
|
16.5
|
1.0
|
|
CHA
|
A:HEC1297
|
3.5
|
20.2
|
1.0
|
|
ND1
|
A:HIS131
|
4.0
|
14.2
|
1.0
|
|
ND1
|
A:HIS81
|
4.0
|
15.7
|
1.0
|
|
CG
|
A:HIS81
|
4.1
|
14.6
|
1.0
|
|
CG
|
A:HIS131
|
4.1
|
13.2
|
1.0
|
|
C2D
|
A:HEC1297
|
4.2
|
20.4
|
1.0
|
|
C3D
|
A:HEC1297
|
4.2
|
21.7
|
1.0
|
|
C3C
|
A:HEC1297
|
4.3
|
17.1
|
1.0
|
|
C2B
|
A:HEC1297
|
4.3
|
18.7
|
1.0
|
|
C2C
|
A:HEC1297
|
4.3
|
20.0
|
1.0
|
|
C3B
|
A:HEC1297
|
4.3
|
18.3
|
1.0
|
|
C3A
|
A:HEC1297
|
4.3
|
21.8
|
1.0
|
|
C2A
|
A:HEC1297
|
4.3
|
21.2
|
1.0
|
|
Iron binding site 6 out
of 18 in 1ofy
Go back to
Iron Binding Sites List in 1ofy
Iron binding site 6 out
of 18 in the Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1298
b:15.3
occ:1.00
|
FE
|
A:HEC1298
|
0.0
|
15.3
|
1.0
|
|
NB
|
A:HEC1298
|
2.0
|
11.7
|
1.0
|
|
ND
|
A:HEC1298
|
2.0
|
11.5
|
1.0
|
|
NC
|
A:HEC1298
|
2.0
|
15.2
|
1.0
|
|
NA
|
A:HEC1298
|
2.0
|
16.8
|
1.0
|
|
NE2
|
A:HIS229
|
2.0
|
17.4
|
1.0
|
|
NE2
|
A:HIS197
|
2.0
|
15.9
|
1.0
|
|
C4B
|
A:HEC1298
|
3.0
|
14.5
|
1.0
|
|
CE1
|
A:HIS197
|
3.0
|
19.7
|
1.0
|
|
C1D
|
A:HEC1298
|
3.0
|
14.7
|
1.0
|
|
C4C
|
A:HEC1298
|
3.0
|
14.7
|
1.0
|
|
CD2
|
A:HIS229
|
3.0
|
17.1
|
1.0
|
|
C1B
|
A:HEC1298
|
3.0
|
14.2
|
1.0
|
|
CE1
|
A:HIS229
|
3.0
|
16.7
|
1.0
|
|
CD2
|
A:HIS197
|
3.0
|
14.8
|
1.0
|
|
C1C
|
A:HEC1298
|
3.0
|
12.8
|
1.0
|
|
C1A
|
A:HEC1298
|
3.0
|
14.9
|
1.0
|
|
C4D
|
A:HEC1298
|
3.1
|
14.0
|
1.0
|
|
C4A
|
A:HEC1298
|
3.1
|
14.7
|
1.0
|
|
CHD
|
A:HEC1298
|
3.4
|
16.3
|
1.0
|
|
CHC
|
A:HEC1298
|
3.4
|
12.0
|
1.0
|
|
CHB
|
A:HEC1298
|
3.4
|
12.0
|
1.0
|
|
CHA
|
A:HEC1298
|
3.4
|
13.1
|
1.0
|
|
ND1
|
A:HIS197
|
4.1
|
20.3
|
1.0
|
|
ND1
|
A:HIS229
|
4.1
|
15.6
|
1.0
|
|
CG
|
A:HIS197
|
4.2
|
18.3
|
1.0
|
|
CG
|
A:HIS229
|
4.2
|
17.7
|
1.0
|
|
C2D
|
A:HEC1298
|
4.2
|
13.5
|
1.0
|
|
C3B
|
A:HEC1298
|
4.2
|
15.7
|
1.0
|
|
C2B
|
A:HEC1298
|
4.3
|
15.3
|
1.0
|
|
C3D
|
A:HEC1298
|
4.3
|
15.0
|
1.0
|
|
C3C
|
A:HEC1298
|
4.3
|
13.3
|
1.0
|
|
C2C
|
A:HEC1298
|
4.3
|
14.5
|
1.0
|
|
C2A
|
A:HEC1298
|
4.3
|
19.0
|
1.0
|
|
C3A
|
A:HEC1298
|
4.3
|
17.9
|
1.0
|
|
Iron binding site 7 out
of 18 in 1ofy
Go back to
Iron Binding Sites List in 1ofy
Iron binding site 7 out
of 18 in the Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1299
b:16.3
occ:1.00
|
FE
|
A:HEC1299
|
0.0
|
16.3
|
1.0
|
|
NA
|
A:HEC1299
|
2.0
|
16.9
|
1.0
|
|
NB
|
A:HEC1299
|
2.0
|
13.7
|
1.0
|
|
ND
|
A:HEC1299
|
2.0
|
16.4
|
1.0
|
|
NC
|
A:HEC1299
|
2.0
|
16.6
|
1.0
|
|
NE2
|
A:HIS245
|
2.1
|
13.9
|
1.0
|
|
NE2
|
A:HIS230
|
2.1
|
17.9
|
1.0
|
|
C4A
|
A:HEC1299
|
3.0
|
16.6
|
1.0
|
|
CE1
|
A:HIS230
|
3.0
|
16.2
|
1.0
|
|
CD2
|
A:HIS245
|
3.0
|
12.6
|
1.0
|
|
C1D
|
A:HEC1299
|
3.0
|
16.8
|
1.0
|
|
C1B
|
A:HEC1299
|
3.0
|
14.0
|
1.0
|
|
C4C
|
A:HEC1299
|
3.0
|
15.9
|
1.0
|
|
C1C
|
A:HEC1299
|
3.0
|
15.8
|
1.0
|
|
C4B
|
A:HEC1299
|
3.0
|
14.8
|
1.0
|
|
C1A
|
A:HEC1299
|
3.0
|
18.1
|
1.0
|
|
CE1
|
A:HIS245
|
3.1
|
15.3
|
1.0
|
|
C4D
|
A:HEC1299
|
3.1
|
17.8
|
1.0
|
|
CD2
|
A:HIS230
|
3.1
|
17.3
|
1.0
|
|
CHB
|
A:HEC1299
|
3.4
|
13.3
|
1.0
|
|
CHD
|
A:HEC1299
|
3.4
|
14.2
|
1.0
|
|
CHC
|
A:HEC1299
|
3.4
|
13.7
|
1.0
|
|
CHA
|
A:HEC1299
|
3.5
|
16.4
|
1.0
|
|
ND1
|
A:HIS230
|
4.1
|
14.6
|
1.0
|
|
ND1
|
A:HIS245
|
4.1
|
13.1
|
1.0
|
|
CG
|
A:HIS245
|
4.2
|
12.3
|
1.0
|
|
C3A
|
A:HEC1299
|
4.2
|
18.7
|
1.0
|
|
CG
|
A:HIS230
|
4.2
|
14.6
|
1.0
|
|
C2A
|
A:HEC1299
|
4.2
|
17.5
|
1.0
|
|
C3C
|
A:HEC1299
|
4.3
|
16.9
|
1.0
|
|
C2B
|
A:HEC1299
|
4.3
|
14.7
|
1.0
|
|
C2C
|
A:HEC1299
|
4.3
|
15.0
|
1.0
|
|
C2D
|
A:HEC1299
|
4.3
|
18.7
|
1.0
|
|
C3B
|
A:HEC1299
|
4.3
|
13.6
|
1.0
|
|
C3D
|
A:HEC1299
|
4.3
|
19.4
|
1.0
|
|
NH1
|
A:ARG231
|
4.4
|
17.6
|
1.0
|
|
Iron binding site 8 out
of 18 in 1ofy
Go back to
Iron Binding Sites List in 1ofy
Iron binding site 8 out
of 18 in the Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1300
b:17.3
occ:1.00
|
FE
|
A:HEC1300
|
0.0
|
17.3
|
1.0
|
|
NE2
|
A:HIS271
|
1.9
|
13.0
|
1.0
|
|
NE2
|
A:HIS200
|
2.0
|
14.3
|
1.0
|
|
ND
|
A:HEC1300
|
2.0
|
21.4
|
1.0
|
|
NA
|
A:HEC1300
|
2.0
|
23.0
|
1.0
|
|
NC
|
A:HEC1300
|
2.0
|
17.3
|
1.0
|
|
NB
|
A:HEC1300
|
2.0
|
18.0
|
1.0
|
|
CD2
|
A:HIS200
|
2.9
|
16.8
|
1.0
|
|
CE1
|
A:HIS271
|
2.9
|
14.2
|
1.0
|
|
CD2
|
A:HIS271
|
3.0
|
13.9
|
1.0
|
|
CE1
|
A:HIS200
|
3.0
|
16.7
|
1.0
|
|
C1A
|
A:HEC1300
|
3.0
|
23.4
|
1.0
|
|
C4D
|
A:HEC1300
|
3.0
|
21.3
|
1.0
|
|
C1C
|
A:HEC1300
|
3.0
|
16.0
|
1.0
|
|
C1B
|
A:HEC1300
|
3.0
|
21.3
|
1.0
|
|
C4C
|
A:HEC1300
|
3.0
|
16.8
|
1.0
|
|
C4B
|
A:HEC1300
|
3.0
|
17.4
|
1.0
|
|
C1D
|
A:HEC1300
|
3.0
|
22.1
|
1.0
|
|
C4A
|
A:HEC1300
|
3.1
|
22.5
|
1.0
|
|
CHA
|
A:HEC1300
|
3.3
|
21.6
|
1.0
|
|
CHC
|
A:HEC1300
|
3.4
|
16.1
|
1.0
|
|
CHB
|
A:HEC1300
|
3.4
|
21.2
|
1.0
|
|
CHD
|
A:HEC1300
|
3.4
|
19.0
|
1.0
|
|
ND1
|
A:HIS271
|
4.1
|
14.0
|
1.0
|
|
CG
|
A:HIS271
|
4.1
|
16.5
|
1.0
|
|
ND1
|
A:HIS200
|
4.1
|
16.3
|
1.0
|
|
CG
|
A:HIS200
|
4.1
|
16.1
|
1.0
|
|
C3D
|
A:HEC1300
|
4.2
|
23.6
|
1.0
|
|
C2A
|
A:HEC1300
|
4.3
|
22.9
|
1.0
|
|
C2D
|
A:HEC1300
|
4.3
|
23.1
|
1.0
|
|
C3C
|
A:HEC1300
|
4.3
|
16.7
|
1.0
|
|
C2B
|
A:HEC1300
|
4.3
|
20.2
|
1.0
|
|
C2C
|
A:HEC1300
|
4.3
|
15.2
|
1.0
|
|
C3A
|
A:HEC1300
|
4.3
|
22.2
|
1.0
|
|
C3B
|
A:HEC1300
|
4.3
|
16.9
|
1.0
|
|
O
|
A:HOH2260
|
4.4
|
41.4
|
1.0
|
|
CE1
|
A:PHE195
|
4.8
|
19.2
|
1.0
|
|
Iron binding site 9 out
of 18 in 1ofy
Go back to
Iron Binding Sites List in 1ofy
Iron binding site 9 out
of 18 in the Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1301
b:18.2
occ:1.00
|
FE
|
A:HEC1301
|
0.0
|
18.2
|
1.0
|
|
NC
|
A:HEC1301
|
2.0
|
11.8
|
1.0
|
|
NA
|
A:HEC1301
|
2.0
|
20.4
|
1.0
|
|
NB
|
A:HEC1301
|
2.0
|
18.2
|
1.0
|
|
ND
|
A:HEC1301
|
2.0
|
13.3
|
1.0
|
|
NE2
|
A:HIS264
|
2.0
|
19.9
|
1.0
|
|
NE2
|
A:HIS288
|
2.0
|
17.9
|
1.0
|
|
C1C
|
A:HEC1301
|
2.9
|
15.2
|
1.0
|
|
C4D
|
A:HEC1301
|
3.0
|
15.1
|
1.0
|
|
CE1
|
A:HIS288
|
3.0
|
17.3
|
1.0
|
|
C4B
|
A:HEC1301
|
3.0
|
19.9
|
1.0
|
|
C1A
|
A:HEC1301
|
3.0
|
19.2
|
1.0
|
|
CD2
|
A:HIS264
|
3.0
|
18.4
|
1.0
|
|
CE1
|
A:HIS264
|
3.1
|
22.6
|
1.0
|
|
C4A
|
A:HEC1301
|
3.1
|
19.4
|
1.0
|
|
C1B
|
A:HEC1301
|
3.1
|
18.1
|
1.0
|
|
C4C
|
A:HEC1301
|
3.1
|
15.4
|
1.0
|
|
CD2
|
A:HIS288
|
3.1
|
16.1
|
1.0
|
|
C1D
|
A:HEC1301
|
3.1
|
13.2
|
1.0
|
|
CHA
|
A:HEC1301
|
3.3
|
15.0
|
1.0
|
|
CHC
|
A:HEC1301
|
3.3
|
18.7
|
1.0
|
|
CHB
|
A:HEC1301
|
3.5
|
17.1
|
1.0
|
|
CHD
|
A:HEC1301
|
3.6
|
14.3
|
1.0
|
|
ND1
|
A:HIS288
|
4.1
|
18.4
|
1.0
|
|
CG
|
A:HIS264
|
4.2
|
20.3
|
1.0
|
|
ND1
|
A:HIS264
|
4.2
|
20.3
|
1.0
|
|
C2C
|
A:HEC1301
|
4.2
|
16.6
|
1.0
|
|
CG
|
A:HIS288
|
4.2
|
19.2
|
1.0
|
|
C3D
|
A:HEC1301
|
4.2
|
16.5
|
1.0
|
|
C2A
|
A:HEC1301
|
4.2
|
19.1
|
1.0
|
|
C3B
|
A:HEC1301
|
4.2
|
18.6
|
1.0
|
|
C3C
|
A:HEC1301
|
4.3
|
15.1
|
1.0
|
|
C3A
|
A:HEC1301
|
4.3
|
18.2
|
1.0
|
|
C2B
|
A:HEC1301
|
4.3
|
18.2
|
1.0
|
|
C2D
|
A:HEC1301
|
4.3
|
14.7
|
1.0
|
|
Iron binding site 10 out
of 18 in 1ofy
Go back to
Iron Binding Sites List in 1ofy
Iron binding site 10 out
of 18 in the Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Three Dimensional Structure of the Reduced Form of Nine-Heme Cytochrome C at pH 7.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1293
b:24.1
occ:1.00
|
FE
|
B:HEC1293
|
0.0
|
24.1
|
1.0
|
|
NC
|
B:HEC1293
|
2.0
|
22.7
|
1.0
|
|
NA
|
B:HEC1293
|
2.0
|
25.0
|
1.0
|
|
NB
|
B:HEC1293
|
2.0
|
26.6
|
1.0
|
|
ND
|
B:HEC1293
|
2.0
|
27.4
|
1.0
|
|
NE2
|
B:HIS51
|
2.0
|
20.1
|
1.0
|
|
NE2
|
B:HIS37
|
2.0
|
20.0
|
1.0
|
|
CE1
|
B:HIS51
|
2.7
|
18.8
|
1.0
|
|
CE1
|
B:HIS37
|
3.0
|
20.5
|
1.0
|
|
C4A
|
B:HEC1293
|
3.0
|
24.5
|
1.0
|
|
C4C
|
B:HEC1293
|
3.0
|
22.3
|
1.0
|
|
C1B
|
B:HEC1293
|
3.0
|
26.0
|
1.0
|
|
C1D
|
B:HEC1293
|
3.0
|
23.6
|
1.0
|
|
CD2
|
B:HIS37
|
3.1
|
21.2
|
1.0
|
|
C1A
|
B:HEC1293
|
3.1
|
25.5
|
1.0
|
|
C4B
|
B:HEC1293
|
3.1
|
26.9
|
1.0
|
|
C1C
|
B:HEC1293
|
3.1
|
26.7
|
1.0
|
|
C4D
|
B:HEC1293
|
3.1
|
26.7
|
1.0
|
|
CD2
|
B:HIS51
|
3.2
|
19.7
|
1.0
|
|
CHB
|
B:HEC1293
|
3.3
|
24.0
|
1.0
|
|
CHD
|
B:HEC1293
|
3.3
|
19.1
|
1.0
|
|
CHC
|
B:HEC1293
|
3.4
|
28.0
|
1.0
|
|
CHA
|
B:HEC1293
|
3.5
|
25.8
|
1.0
|
|
ND1
|
B:HIS51
|
3.9
|
19.4
|
1.0
|
|
ND1
|
B:HIS37
|
4.1
|
20.9
|
1.0
|
|
CG
|
B:HIS37
|
4.2
|
19.9
|
1.0
|
|
CG
|
B:HIS51
|
4.2
|
20.6
|
1.0
|
|
C3A
|
B:HEC1293
|
4.2
|
26.3
|
1.0
|
|
C3C
|
B:HEC1293
|
4.2
|
24.3
|
1.0
|
|
C2B
|
B:HEC1293
|
4.2
|
27.2
|
1.0
|
|
C2A
|
B:HEC1293
|
4.2
|
26.0
|
1.0
|
|
C2D
|
B:HEC1293
|
4.3
|
25.3
|
1.0
|
|
C3B
|
B:HEC1293
|
4.3
|
26.4
|
1.0
|
|
C3D
|
B:HEC1293
|
4.3
|
26.2
|
1.0
|
|
C2C
|
B:HEC1293
|
4.3
|
25.5
|
1.0
|
|
CB
|
B:ALA10
|
4.6
|
25.9
|
1.0
|
|
Reference:
I.Bento,
V.H.Teixeira,
A.M.Baptista,
C.M.Soares,
P.M.Matias,
M.A.Carrondo.
Redox-Bohr and Other Cooperativity Effects in the Nine-Heme Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774: Crystallographic and Modeling Studies J.Biol.Chem. V. 278 36455 2003.
ISSN: ISSN 0021-9258
PubMed: 12750363
DOI: 10.1074/JBC.M301745200
Page generated: Sat Aug 3 12:29:04 2024
|
