Iron in PDB 1oq4: The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.
Enzymatic activity of The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.
All present enzymatic activity of The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.:
1.14.19.2;
Protein crystallography data
The structure of The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide., PDB code: 1oq4
was solved by
M.Moche,
A.K.Ghoshal,
J.Shanklin,
Y.Lindqvist,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
24.92 /
2.40
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
81.774,
145.210,
192.880,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
22.9 /
24.2
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.
(pdb code 1oq4). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide., PDB code: 1oq4:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 1oq4
Go back to
Iron Binding Sites List in 1oq4
Iron binding site 1 out
of 12 in the The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe364
b:32.2
occ:1.00
|
OE1
|
A:GLU143
|
2.1
|
6.5
|
1.0
|
OE2
|
A:GLU229
|
2.1
|
11.4
|
1.0
|
OE1
|
A:GLU105
|
2.3
|
11.6
|
1.0
|
ND1
|
A:HIS146
|
2.3
|
10.1
|
1.0
|
OE2
|
A:GLU105
|
2.4
|
9.7
|
1.0
|
CD
|
A:GLU105
|
2.7
|
10.7
|
1.0
|
N3
|
A:AZI366
|
2.7
|
4.7
|
1.0
|
CD
|
A:GLU229
|
3.1
|
10.6
|
1.0
|
CE1
|
A:HIS146
|
3.1
|
10.2
|
1.0
|
N2
|
A:AZI366
|
3.1
|
2.7
|
1.0
|
CD
|
A:GLU143
|
3.2
|
7.9
|
1.0
|
OE1
|
A:GLU229
|
3.4
|
11.3
|
1.0
|
CG
|
A:HIS146
|
3.5
|
10.2
|
1.0
|
OE2
|
A:GLU143
|
3.6
|
11.1
|
1.0
|
N1
|
A:AZI366
|
3.9
|
6.0
|
1.0
|
CB
|
A:HIS146
|
3.9
|
9.0
|
1.0
|
O
|
A:HOH442
|
3.9
|
28.2
|
1.0
|
FE
|
A:FE365
|
4.1
|
22.7
|
1.0
|
O
|
A:HOH401
|
4.2
|
30.1
|
1.0
|
CG
|
A:GLU105
|
4.2
|
8.7
|
1.0
|
NE2
|
A:HIS146
|
4.3
|
10.2
|
1.0
|
CG
|
A:GLU229
|
4.5
|
9.4
|
1.0
|
CG2
|
A:ILE225
|
4.5
|
10.2
|
1.0
|
CG
|
A:GLU143
|
4.5
|
7.7
|
1.0
|
CD2
|
A:HIS146
|
4.5
|
10.7
|
1.0
|
NE2
|
A:HIS203
|
4.5
|
13.3
|
1.0
|
CB
|
A:GLU143
|
4.7
|
8.0
|
1.0
|
CA
|
A:GLU143
|
4.8
|
8.2
|
1.0
|
O
|
A:GLU143
|
4.9
|
8.9
|
1.0
|
CD2
|
A:HIS203
|
4.9
|
13.2
|
1.0
|
|
Iron binding site 2 out
of 12 in 1oq4
Go back to
Iron Binding Sites List in 1oq4
Iron binding site 2 out
of 12 in the The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe365
b:22.7
occ:1.00
|
OE2
|
A:GLU143
|
1.9
|
11.1
|
1.0
|
OE1
|
A:GLU229
|
2.1
|
11.3
|
1.0
|
OE1
|
A:GLU196
|
2.1
|
12.2
|
1.0
|
ND1
|
A:HIS232
|
2.4
|
10.3
|
1.0
|
OE2
|
A:GLU196
|
2.5
|
12.2
|
1.0
|
N1
|
A:AZI366
|
2.6
|
6.0
|
1.0
|
CD
|
A:GLU196
|
2.6
|
11.7
|
1.0
|
CD
|
A:GLU143
|
3.1
|
7.9
|
1.0
|
CD
|
A:GLU229
|
3.1
|
10.6
|
1.0
|
N2
|
A:AZI366
|
3.3
|
2.7
|
1.0
|
CE1
|
A:HIS232
|
3.3
|
11.3
|
1.0
|
CG
|
A:HIS232
|
3.5
|
10.4
|
1.0
|
OE1
|
A:GLU143
|
3.6
|
6.5
|
1.0
|
NE1
|
A:TRP139
|
3.7
|
6.1
|
1.0
|
OE2
|
A:GLU229
|
3.7
|
11.4
|
1.0
|
CB
|
A:HIS232
|
3.8
|
10.3
|
1.0
|
CA
|
A:GLU229
|
4.1
|
9.6
|
1.0
|
FE
|
A:FE364
|
4.1
|
32.2
|
1.0
|
CG
|
A:GLU196
|
4.1
|
10.9
|
1.0
|
N3
|
A:AZI366
|
4.1
|
4.7
|
1.0
|
CB
|
A:GLU229
|
4.2
|
9.5
|
1.0
|
CG
|
A:GLU229
|
4.2
|
9.4
|
1.0
|
CG
|
A:GLU143
|
4.3
|
7.7
|
1.0
|
CE2
|
A:TRP139
|
4.4
|
6.7
|
1.0
|
CZ2
|
A:TRP139
|
4.4
|
6.6
|
1.0
|
NE2
|
A:HIS232
|
4.5
|
11.4
|
1.0
|
OG1
|
A:THR199
|
4.5
|
14.0
|
1.0
|
CD2
|
A:HIS232
|
4.6
|
11.1
|
1.0
|
CD1
|
A:TRP139
|
4.7
|
6.8
|
1.0
|
CE1
|
A:HIS146
|
4.8
|
10.2
|
1.0
|
CB
|
A:GLU196
|
4.8
|
10.4
|
1.0
|
N
|
A:GLU229
|
4.8
|
9.2
|
1.0
|
CA
|
A:GLU196
|
4.9
|
10.3
|
1.0
|
O
|
A:GLU229
|
5.0
|
9.7
|
1.0
|
|
Iron binding site 3 out
of 12 in 1oq4
Go back to
Iron Binding Sites List in 1oq4
Iron binding site 3 out
of 12 in the The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe364
b:31.8
occ:1.00
|
OE1
|
B:GLU143
|
2.1
|
6.8
|
1.0
|
OE2
|
B:GLU229
|
2.2
|
11.3
|
1.0
|
OE1
|
B:GLU105
|
2.3
|
11.3
|
1.0
|
OE2
|
B:GLU105
|
2.3
|
9.8
|
1.0
|
ND1
|
B:HIS146
|
2.4
|
9.8
|
1.0
|
N3
|
B:AZI1366
|
2.6
|
4.7
|
1.0
|
CD
|
B:GLU105
|
2.7
|
10.6
|
1.0
|
N2
|
B:AZI1366
|
3.1
|
2.2
|
1.0
|
CD
|
B:GLU229
|
3.1
|
10.5
|
1.0
|
CE1
|
B:HIS146
|
3.2
|
10.3
|
1.0
|
CD
|
B:GLU143
|
3.2
|
8.0
|
1.0
|
OE1
|
B:GLU229
|
3.4
|
11.3
|
1.0
|
CG
|
B:HIS146
|
3.5
|
9.9
|
1.0
|
OE2
|
B:GLU143
|
3.7
|
10.9
|
1.0
|
O
|
B:HOH1442
|
3.9
|
28.1
|
1.0
|
N1
|
B:AZI1366
|
3.9
|
6.0
|
1.0
|
CB
|
B:HIS146
|
3.9
|
8.9
|
1.0
|
O
|
B:HOH1401
|
4.0
|
30.0
|
1.0
|
FE
|
B:FE365
|
4.1
|
22.5
|
1.0
|
CG
|
B:GLU105
|
4.2
|
8.8
|
1.0
|
NE2
|
B:HIS146
|
4.4
|
10.3
|
1.0
|
CG
|
B:GLU143
|
4.5
|
7.8
|
1.0
|
NE2
|
B:HIS203
|
4.5
|
12.9
|
1.0
|
CG
|
B:GLU229
|
4.5
|
9.6
|
1.0
|
CD2
|
B:HIS146
|
4.6
|
10.9
|
1.0
|
CG2
|
B:ILE225
|
4.6
|
10.2
|
1.0
|
CB
|
B:GLU143
|
4.7
|
7.9
|
1.0
|
CA
|
B:GLU143
|
4.8
|
8.1
|
1.0
|
O
|
B:GLU143
|
4.9
|
8.9
|
1.0
|
CD2
|
B:HIS203
|
4.9
|
13.1
|
1.0
|
CB
|
B:GLU105
|
5.0
|
9.0
|
1.0
|
|
Iron binding site 4 out
of 12 in 1oq4
Go back to
Iron Binding Sites List in 1oq4
Iron binding site 4 out
of 12 in the The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe365
b:22.5
occ:1.00
|
OE2
|
B:GLU143
|
2.0
|
10.9
|
1.0
|
OE1
|
B:GLU196
|
2.0
|
12.1
|
1.0
|
OE1
|
B:GLU229
|
2.1
|
11.3
|
1.0
|
ND1
|
B:HIS232
|
2.4
|
10.1
|
1.0
|
OE2
|
B:GLU196
|
2.5
|
12.3
|
1.0
|
CD
|
B:GLU196
|
2.6
|
11.7
|
1.0
|
N1
|
B:AZI1366
|
2.6
|
6.0
|
1.0
|
CD
|
B:GLU143
|
3.1
|
8.0
|
1.0
|
CD
|
B:GLU229
|
3.1
|
10.5
|
1.0
|
N2
|
B:AZI1366
|
3.3
|
2.2
|
1.0
|
CE1
|
B:HIS232
|
3.3
|
11.2
|
1.0
|
CG
|
B:HIS232
|
3.5
|
10.5
|
1.0
|
OE1
|
B:GLU143
|
3.6
|
6.8
|
1.0
|
NE1
|
B:TRP139
|
3.7
|
5.9
|
1.0
|
OE2
|
B:GLU229
|
3.7
|
11.3
|
1.0
|
CB
|
B:HIS232
|
3.8
|
10.2
|
1.0
|
CA
|
B:GLU229
|
4.1
|
9.7
|
1.0
|
N3
|
B:AZI1366
|
4.1
|
4.7
|
1.0
|
CG
|
B:GLU196
|
4.1
|
10.9
|
1.0
|
FE
|
B:FE364
|
4.1
|
31.8
|
1.0
|
CB
|
B:GLU229
|
4.1
|
9.4
|
1.0
|
CG
|
B:GLU229
|
4.2
|
9.6
|
1.0
|
CG
|
B:GLU143
|
4.3
|
7.8
|
1.0
|
CE2
|
B:TRP139
|
4.4
|
6.7
|
1.0
|
CZ2
|
B:TRP139
|
4.4
|
6.6
|
1.0
|
OG1
|
B:THR199
|
4.4
|
14.1
|
1.0
|
NE2
|
B:HIS232
|
4.5
|
11.6
|
1.0
|
CD2
|
B:HIS232
|
4.6
|
11.2
|
1.0
|
CD1
|
B:TRP139
|
4.7
|
6.7
|
1.0
|
CB
|
B:GLU196
|
4.8
|
10.3
|
1.0
|
CE1
|
B:HIS146
|
4.8
|
10.3
|
1.0
|
N
|
B:GLU229
|
4.8
|
9.4
|
1.0
|
CA
|
B:GLU196
|
4.9
|
10.3
|
1.0
|
O
|
B:GLU229
|
4.9
|
9.7
|
1.0
|
|
Iron binding site 5 out
of 12 in 1oq4
Go back to
Iron Binding Sites List in 1oq4
Iron binding site 5 out
of 12 in the The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe364
b:32.0
occ:1.00
|
OE1
|
C:GLU143
|
2.1
|
6.5
|
1.0
|
OE2
|
C:GLU229
|
2.2
|
11.4
|
1.0
|
OE2
|
C:GLU105
|
2.3
|
9.9
|
1.0
|
OE1
|
C:GLU105
|
2.3
|
11.7
|
1.0
|
ND1
|
C:HIS146
|
2.4
|
10.1
|
1.0
|
CD
|
C:GLU105
|
2.6
|
10.6
|
1.0
|
N3
|
C:AZI2366
|
2.7
|
4.5
|
1.0
|
N2
|
C:AZI2366
|
3.1
|
2.5
|
1.0
|
CD
|
C:GLU229
|
3.2
|
10.6
|
1.0
|
CE1
|
C:HIS146
|
3.2
|
10.2
|
1.0
|
CD
|
C:GLU143
|
3.2
|
7.8
|
1.0
|
OE1
|
C:GLU229
|
3.4
|
11.3
|
1.0
|
CG
|
C:HIS146
|
3.5
|
10.0
|
1.0
|
OE2
|
C:GLU143
|
3.7
|
11.1
|
1.0
|
N1
|
C:AZI2366
|
3.8
|
6.0
|
1.0
|
CB
|
C:HIS146
|
3.9
|
9.0
|
1.0
|
O
|
C:HOH2401
|
4.0
|
30.1
|
1.0
|
O
|
C:HOH2442
|
4.0
|
28.3
|
1.0
|
CG
|
C:GLU105
|
4.1
|
8.9
|
1.0
|
FE
|
C:FE365
|
4.2
|
23.2
|
1.0
|
NE2
|
C:HIS146
|
4.4
|
10.1
|
1.0
|
CG
|
C:GLU143
|
4.5
|
7.8
|
1.0
|
NE2
|
C:HIS203
|
4.5
|
13.1
|
1.0
|
CD2
|
C:HIS146
|
4.5
|
10.6
|
1.0
|
CG
|
C:GLU229
|
4.5
|
9.5
|
1.0
|
CG2
|
C:ILE225
|
4.5
|
10.4
|
1.0
|
CB
|
C:GLU143
|
4.6
|
7.8
|
1.0
|
CA
|
C:GLU143
|
4.8
|
8.1
|
1.0
|
O
|
C:GLU143
|
4.9
|
8.8
|
1.0
|
CD2
|
C:HIS203
|
4.9
|
13.2
|
1.0
|
CB
|
C:GLU105
|
5.0
|
9.0
|
1.0
|
|
Iron binding site 6 out
of 12 in 1oq4
Go back to
Iron Binding Sites List in 1oq4
Iron binding site 6 out
of 12 in the The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe365
b:23.2
occ:1.00
|
OE2
|
C:GLU143
|
2.0
|
11.1
|
1.0
|
OE1
|
C:GLU196
|
2.1
|
12.0
|
1.0
|
OE1
|
C:GLU229
|
2.1
|
11.3
|
1.0
|
OE2
|
C:GLU196
|
2.4
|
12.4
|
1.0
|
ND1
|
C:HIS232
|
2.4
|
10.2
|
1.0
|
N1
|
C:AZI2366
|
2.5
|
6.0
|
1.0
|
CD
|
C:GLU196
|
2.6
|
11.6
|
1.0
|
CD
|
C:GLU143
|
3.1
|
7.8
|
1.0
|
CD
|
C:GLU229
|
3.2
|
10.6
|
1.0
|
N2
|
C:AZI2366
|
3.3
|
2.5
|
1.0
|
CE1
|
C:HIS232
|
3.3
|
11.1
|
1.0
|
CG
|
C:HIS232
|
3.5
|
10.4
|
1.0
|
OE1
|
C:GLU143
|
3.6
|
6.5
|
1.0
|
NE1
|
C:TRP139
|
3.7
|
6.1
|
1.0
|
CB
|
C:HIS232
|
3.8
|
10.3
|
1.0
|
OE2
|
C:GLU229
|
3.8
|
11.4
|
1.0
|
CG
|
C:GLU196
|
4.1
|
11.0
|
1.0
|
CA
|
C:GLU229
|
4.1
|
9.7
|
1.0
|
N3
|
C:AZI2366
|
4.1
|
4.5
|
1.0
|
FE
|
C:FE364
|
4.2
|
32.0
|
1.0
|
CB
|
C:GLU229
|
4.2
|
9.4
|
1.0
|
CG
|
C:GLU229
|
4.3
|
9.5
|
1.0
|
CG
|
C:GLU143
|
4.3
|
7.8
|
1.0
|
CE2
|
C:TRP139
|
4.3
|
6.7
|
1.0
|
CZ2
|
C:TRP139
|
4.4
|
6.7
|
1.0
|
NE2
|
C:HIS232
|
4.5
|
11.5
|
1.0
|
OG1
|
C:THR199
|
4.5
|
13.9
|
1.0
|
CD2
|
C:HIS232
|
4.6
|
11.2
|
1.0
|
CD1
|
C:TRP139
|
4.7
|
6.8
|
1.0
|
CB
|
C:GLU196
|
4.8
|
10.3
|
1.0
|
CE1
|
C:HIS146
|
4.8
|
10.2
|
1.0
|
N
|
C:GLU229
|
4.8
|
9.3
|
1.0
|
CA
|
C:GLU196
|
4.9
|
10.3
|
1.0
|
O
|
C:GLU229
|
5.0
|
9.5
|
1.0
|
|
Iron binding site 7 out
of 12 in 1oq4
Go back to
Iron Binding Sites List in 1oq4
Iron binding site 7 out
of 12 in the The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe364
b:32.1
occ:1.00
|
OE1
|
D:GLU143
|
2.1
|
6.8
|
1.0
|
OE2
|
D:GLU229
|
2.2
|
11.5
|
1.0
|
OE1
|
D:GLU105
|
2.3
|
11.3
|
1.0
|
ND1
|
D:HIS146
|
2.4
|
9.7
|
1.0
|
OE2
|
D:GLU105
|
2.4
|
9.8
|
1.0
|
N3
|
D:AZI3366
|
2.6
|
4.8
|
1.0
|
CD
|
D:GLU105
|
2.6
|
10.7
|
1.0
|
N2
|
D:AZI3366
|
3.1
|
2.5
|
1.0
|
CD
|
D:GLU229
|
3.1
|
10.4
|
1.0
|
CE1
|
D:HIS146
|
3.2
|
10.3
|
1.0
|
CD
|
D:GLU143
|
3.2
|
7.9
|
1.0
|
OE1
|
D:GLU229
|
3.4
|
11.1
|
1.0
|
CG
|
D:HIS146
|
3.5
|
10.1
|
1.0
|
OE2
|
D:GLU143
|
3.7
|
11.1
|
1.0
|
N1
|
D:AZI3366
|
3.9
|
6.0
|
1.0
|
O
|
D:HOH3442
|
3.9
|
27.9
|
1.0
|
CB
|
D:HIS146
|
3.9
|
9.1
|
1.0
|
O
|
D:HOH3401
|
4.1
|
29.9
|
1.0
|
FE
|
D:FE365
|
4.1
|
23.1
|
1.0
|
CG
|
D:GLU105
|
4.2
|
8.9
|
1.0
|
NE2
|
D:HIS146
|
4.4
|
10.4
|
1.0
|
NE2
|
D:HIS203
|
4.5
|
12.8
|
1.0
|
CG
|
D:GLU229
|
4.5
|
9.6
|
1.0
|
CG
|
D:GLU143
|
4.5
|
7.8
|
1.0
|
CD2
|
D:HIS146
|
4.6
|
10.6
|
1.0
|
CG2
|
D:ILE225
|
4.6
|
10.2
|
1.0
|
CB
|
D:GLU143
|
4.7
|
8.0
|
1.0
|
CA
|
D:GLU143
|
4.8
|
8.2
|
1.0
|
OG1
|
D:THR199
|
4.9
|
14.1
|
1.0
|
CD2
|
D:HIS203
|
5.0
|
13.0
|
1.0
|
CB
|
D:GLU105
|
5.0
|
8.9
|
1.0
|
O
|
D:GLU143
|
5.0
|
8.8
|
1.0
|
|
Iron binding site 8 out
of 12 in 1oq4
Go back to
Iron Binding Sites List in 1oq4
Iron binding site 8 out
of 12 in the The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe365
b:23.1
occ:1.00
|
OE2
|
D:GLU143
|
2.0
|
11.1
|
1.0
|
OE1
|
D:GLU196
|
2.1
|
12.1
|
1.0
|
OE1
|
D:GLU229
|
2.1
|
11.1
|
1.0
|
ND1
|
D:HIS232
|
2.4
|
10.1
|
1.0
|
OE2
|
D:GLU196
|
2.5
|
12.3
|
1.0
|
CD
|
D:GLU196
|
2.6
|
11.6
|
1.0
|
N1
|
D:AZI3366
|
2.6
|
6.0
|
1.0
|
CD
|
D:GLU143
|
3.1
|
7.9
|
1.0
|
CD
|
D:GLU229
|
3.1
|
10.4
|
1.0
|
N2
|
D:AZI3366
|
3.3
|
2.5
|
1.0
|
CE1
|
D:HIS232
|
3.3
|
11.2
|
1.0
|
CG
|
D:HIS232
|
3.5
|
10.5
|
1.0
|
OE1
|
D:GLU143
|
3.6
|
6.8
|
1.0
|
OE2
|
D:GLU229
|
3.7
|
11.5
|
1.0
|
NE1
|
D:TRP139
|
3.7
|
6.1
|
1.0
|
CB
|
D:HIS232
|
3.8
|
10.2
|
1.0
|
CA
|
D:GLU229
|
4.0
|
9.6
|
1.0
|
CG
|
D:GLU196
|
4.1
|
11.0
|
1.0
|
N3
|
D:AZI3366
|
4.1
|
4.8
|
1.0
|
FE
|
D:FE364
|
4.1
|
32.1
|
1.0
|
CB
|
D:GLU229
|
4.1
|
9.3
|
1.0
|
CG
|
D:GLU229
|
4.2
|
9.6
|
1.0
|
CG
|
D:GLU143
|
4.4
|
7.8
|
1.0
|
CE2
|
D:TRP139
|
4.4
|
6.8
|
1.0
|
OG1
|
D:THR199
|
4.4
|
14.1
|
1.0
|
CZ2
|
D:TRP139
|
4.4
|
6.5
|
1.0
|
NE2
|
D:HIS232
|
4.5
|
11.6
|
1.0
|
CD2
|
D:HIS232
|
4.6
|
11.1
|
1.0
|
CD1
|
D:TRP139
|
4.7
|
6.8
|
1.0
|
CB
|
D:GLU196
|
4.8
|
10.4
|
1.0
|
CE1
|
D:HIS146
|
4.8
|
10.3
|
1.0
|
N
|
D:GLU229
|
4.8
|
9.2
|
1.0
|
CA
|
D:GLU196
|
4.9
|
10.4
|
1.0
|
O
|
D:GLU229
|
4.9
|
9.5
|
1.0
|
|
Iron binding site 9 out
of 12 in 1oq4
Go back to
Iron Binding Sites List in 1oq4
Iron binding site 9 out
of 12 in the The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe364
b:32.7
occ:1.00
|
OE1
|
E:GLU143
|
2.0
|
6.4
|
1.0
|
OE2
|
E:GLU229
|
2.2
|
11.5
|
1.0
|
OE1
|
E:GLU105
|
2.3
|
11.4
|
1.0
|
ND1
|
E:HIS146
|
2.3
|
10.0
|
1.0
|
OE2
|
E:GLU105
|
2.4
|
9.8
|
1.0
|
CD
|
E:GLU105
|
2.7
|
10.6
|
1.0
|
N3
|
E:AZI4366
|
2.7
|
4.7
|
1.0
|
N2
|
E:AZI4366
|
3.1
|
2.5
|
1.0
|
CE1
|
E:HIS146
|
3.2
|
10.1
|
1.0
|
CD
|
E:GLU143
|
3.2
|
7.8
|
1.0
|
CD
|
E:GLU229
|
3.2
|
10.6
|
1.0
|
OE1
|
E:GLU229
|
3.4
|
11.0
|
1.0
|
CG
|
E:HIS146
|
3.5
|
10.1
|
1.0
|
OE2
|
E:GLU143
|
3.6
|
11.3
|
1.0
|
N1
|
E:AZI4366
|
3.8
|
5.9
|
1.0
|
CB
|
E:HIS146
|
3.9
|
9.0
|
1.0
|
O
|
E:HOH4442
|
3.9
|
28.3
|
1.0
|
O
|
E:HOH4401
|
4.0
|
30.0
|
1.0
|
FE
|
E:FE365
|
4.1
|
23.0
|
1.0
|
CG
|
E:GLU105
|
4.2
|
8.6
|
1.0
|
NE2
|
E:HIS146
|
4.4
|
10.1
|
1.0
|
CG
|
E:GLU143
|
4.4
|
7.8
|
1.0
|
CD2
|
E:HIS146
|
4.5
|
10.5
|
1.0
|
CG2
|
E:ILE225
|
4.5
|
10.2
|
1.0
|
CG
|
E:GLU229
|
4.6
|
9.6
|
1.0
|
CB
|
E:GLU143
|
4.6
|
7.9
|
1.0
|
NE2
|
E:HIS203
|
4.6
|
13.3
|
1.0
|
CA
|
E:GLU143
|
4.7
|
8.1
|
1.0
|
O
|
E:GLU143
|
4.9
|
8.8
|
1.0
|
CB
|
E:GLU105
|
5.0
|
9.0
|
1.0
|
|
Iron binding site 10 out
of 12 in 1oq4
Go back to
Iron Binding Sites List in 1oq4
Iron binding site 10 out
of 12 in the The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of The Crystal Structure of the Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) and Azide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe365
b:23.0
occ:1.00
|
OE2
|
E:GLU143
|
1.9
|
11.3
|
1.0
|
OE1
|
E:GLU196
|
2.1
|
12.1
|
1.0
|
OE1
|
E:GLU229
|
2.1
|
11.0
|
1.0
|
ND1
|
E:HIS232
|
2.5
|
10.2
|
1.0
|
OE2
|
E:GLU196
|
2.5
|
12.4
|
1.0
|
N1
|
E:AZI4366
|
2.5
|
5.9
|
1.0
|
CD
|
E:GLU196
|
2.6
|
11.6
|
1.0
|
CD
|
E:GLU143
|
3.1
|
7.8
|
1.0
|
CD
|
E:GLU229
|
3.2
|
10.6
|
1.0
|
N2
|
E:AZI4366
|
3.2
|
2.5
|
1.0
|
CE1
|
E:HIS232
|
3.3
|
11.2
|
1.0
|
CG
|
E:HIS232
|
3.5
|
10.5
|
1.0
|
OE1
|
E:GLU143
|
3.5
|
6.4
|
1.0
|
NE1
|
E:TRP139
|
3.7
|
6.2
|
1.0
|
OE2
|
E:GLU229
|
3.8
|
11.5
|
1.0
|
CB
|
E:HIS232
|
3.8
|
10.3
|
1.0
|
N3
|
E:AZI4366
|
4.1
|
4.7
|
1.0
|
FE
|
E:FE364
|
4.1
|
32.7
|
1.0
|
CG
|
E:GLU196
|
4.1
|
10.9
|
1.0
|
CA
|
E:GLU229
|
4.1
|
9.6
|
1.0
|
CB
|
E:GLU229
|
4.2
|
9.4
|
1.0
|
CG
|
E:GLU229
|
4.3
|
9.6
|
1.0
|
CG
|
E:GLU143
|
4.3
|
7.8
|
1.0
|
CE2
|
E:TRP139
|
4.3
|
6.6
|
1.0
|
CZ2
|
E:TRP139
|
4.3
|
6.6
|
1.0
|
OG1
|
E:THR199
|
4.5
|
14.0
|
1.0
|
NE2
|
E:HIS232
|
4.5
|
11.5
|
1.0
|
CD2
|
E:HIS232
|
4.6
|
11.2
|
1.0
|
CD1
|
E:TRP139
|
4.7
|
6.8
|
1.0
|
CE1
|
E:HIS146
|
4.8
|
10.1
|
1.0
|
CB
|
E:GLU196
|
4.8
|
10.3
|
1.0
|
N
|
E:GLU229
|
4.9
|
9.2
|
1.0
|
CA
|
E:GLU196
|
4.9
|
10.3
|
1.0
|
O
|
E:GLU229
|
5.0
|
9.5
|
1.0
|
|
Reference:
M.Moche,
J.Shanklin,
A.Ghoshal,
Y.Lindqvist.
Azide and Acetate Complexes Plus Two Iron-Depleted Crystal Structures of the Di-Iron Enzyme Delta 9 Stearoyl-Acp Desaturase- Implications For Oxygen Activation and Catalytic Intermediates. J.Biol.Chem. V. 278 25072 2003.
ISSN: ISSN 0021-9258
PubMed: 12704186
DOI: 10.1074/JBC.M301662200
Page generated: Sat Aug 3 12:33:44 2024
|