Iron in PDB 1os6: Cytochrome C7 (Ppca) From Geobacter Sulfurreducens
Protein crystallography data
The structure of Cytochrome C7 (Ppca) From Geobacter Sulfurreducens, PDB code: 1os6
was solved by
P.R.Pokkuluri,
Y.Y.Londer,
N.E.C.Duke,
W.C.Long,
M.Schiffer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
1.45
|
Space group
|
P 43 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
32.400,
32.400,
178.400,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.2 /
22.7
|
Iron Binding Sites:
The binding sites of Iron atom in the Cytochrome C7 (Ppca) From Geobacter Sulfurreducens
(pdb code 1os6). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the
Cytochrome C7 (Ppca) From Geobacter Sulfurreducens, PDB code: 1os6:
Jump to Iron binding site number:
1;
2;
3;
Iron binding site 1 out
of 3 in 1os6
Go back to
Iron Binding Sites List in 1os6
Iron binding site 1 out
of 3 in the Cytochrome C7 (Ppca) From Geobacter Sulfurreducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cytochrome C7 (Ppca) From Geobacter Sulfurreducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe72
b:8.4
occ:1.00
|
FE
|
A:HEM72
|
0.0
|
8.4
|
1.0
|
NB
|
A:HEM72
|
2.0
|
11.2
|
1.0
|
NC
|
A:HEM72
|
2.0
|
9.8
|
1.0
|
ND
|
A:HEM72
|
2.0
|
9.4
|
1.0
|
NA
|
A:HEM72
|
2.0
|
9.5
|
1.0
|
NE2
|
A:HIS17
|
2.0
|
7.5
|
1.0
|
NE2
|
A:HIS31
|
2.0
|
8.3
|
1.0
|
CD2
|
A:HIS17
|
3.0
|
9.2
|
1.0
|
C1B
|
A:HEM72
|
3.0
|
10.2
|
1.0
|
CE1
|
A:HIS17
|
3.0
|
10.9
|
1.0
|
CE1
|
A:HIS31
|
3.0
|
10.6
|
1.0
|
C1C
|
A:HEM72
|
3.0
|
9.7
|
1.0
|
C4C
|
A:HEM72
|
3.0
|
8.9
|
1.0
|
C4D
|
A:HEM72
|
3.0
|
9.2
|
1.0
|
C4B
|
A:HEM72
|
3.0
|
10.4
|
1.0
|
CD2
|
A:HIS31
|
3.0
|
7.8
|
1.0
|
C1D
|
A:HEM72
|
3.0
|
9.4
|
1.0
|
C1A
|
A:HEM72
|
3.1
|
11.2
|
1.0
|
C4A
|
A:HEM72
|
3.1
|
12.4
|
1.0
|
CHC
|
A:HEM72
|
3.4
|
13.3
|
1.0
|
CHB
|
A:HEM72
|
3.4
|
12.2
|
1.0
|
CHA
|
A:HEM72
|
3.4
|
11.5
|
1.0
|
CHD
|
A:HEM72
|
3.4
|
9.7
|
1.0
|
ND1
|
A:HIS17
|
4.1
|
14.8
|
1.0
|
CG
|
A:HIS17
|
4.1
|
8.4
|
1.0
|
ND1
|
A:HIS31
|
4.1
|
9.1
|
1.0
|
CG
|
A:HIS31
|
4.2
|
7.6
|
1.0
|
C2C
|
A:HEM72
|
4.2
|
8.2
|
1.0
|
C2B
|
A:HEM72
|
4.2
|
8.8
|
1.0
|
C3D
|
A:HEM72
|
4.2
|
7.7
|
1.0
|
C3B
|
A:HEM72
|
4.2
|
9.9
|
1.0
|
C3C
|
A:HEM72
|
4.3
|
7.1
|
1.0
|
C2D
|
A:HEM72
|
4.3
|
8.4
|
1.0
|
C3A
|
A:HEM72
|
4.3
|
10.6
|
1.0
|
C2A
|
A:HEM72
|
4.3
|
10.5
|
1.0
|
|
Iron binding site 2 out
of 3 in 1os6
Go back to
Iron Binding Sites List in 1os6
Iron binding site 2 out
of 3 in the Cytochrome C7 (Ppca) From Geobacter Sulfurreducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cytochrome C7 (Ppca) From Geobacter Sulfurreducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe73
b:9.1
occ:1.00
|
FE
|
A:HEM73
|
0.0
|
9.1
|
1.0
|
ND
|
A:HEM73
|
2.0
|
9.0
|
1.0
|
NE2
|
A:HIS55
|
2.0
|
8.8
|
1.0
|
NE2
|
A:HIS20
|
2.0
|
7.9
|
1.0
|
NB
|
A:HEM73
|
2.0
|
9.1
|
1.0
|
NC
|
A:HEM73
|
2.0
|
9.2
|
1.0
|
NA
|
A:HEM73
|
2.0
|
10.3
|
1.0
|
CE1
|
A:HIS20
|
2.9
|
8.7
|
1.0
|
CE1
|
A:HIS55
|
3.0
|
8.1
|
1.0
|
C4D
|
A:HEM73
|
3.0
|
8.3
|
1.0
|
CD2
|
A:HIS20
|
3.0
|
9.5
|
1.0
|
C4B
|
A:HEM73
|
3.0
|
9.1
|
1.0
|
C1D
|
A:HEM73
|
3.0
|
11.3
|
1.0
|
CD2
|
A:HIS55
|
3.0
|
9.8
|
1.0
|
C1C
|
A:HEM73
|
3.1
|
10.3
|
1.0
|
C4A
|
A:HEM73
|
3.1
|
12.9
|
1.0
|
C4C
|
A:HEM73
|
3.1
|
9.8
|
1.0
|
C1B
|
A:HEM73
|
3.1
|
9.5
|
1.0
|
C1A
|
A:HEM73
|
3.1
|
8.8
|
1.0
|
CHC
|
A:HEM73
|
3.4
|
11.5
|
1.0
|
CHD
|
A:HEM73
|
3.4
|
9.9
|
1.0
|
CHA
|
A:HEM73
|
3.4
|
12.2
|
1.0
|
CHB
|
A:HEM73
|
3.5
|
10.6
|
1.0
|
ND1
|
A:HIS55
|
4.1
|
10.9
|
1.0
|
ND1
|
A:HIS20
|
4.1
|
8.8
|
1.0
|
CG
|
A:HIS20
|
4.1
|
10.0
|
1.0
|
CG
|
A:HIS55
|
4.2
|
12.3
|
1.0
|
C3D
|
A:HEM73
|
4.2
|
11.0
|
1.0
|
C2D
|
A:HEM73
|
4.2
|
11.2
|
1.0
|
C2B
|
A:HEM73
|
4.3
|
8.7
|
1.0
|
C3B
|
A:HEM73
|
4.3
|
10.2
|
1.0
|
C3A
|
A:HEM73
|
4.3
|
12.6
|
1.0
|
C2C
|
A:HEM73
|
4.3
|
11.6
|
1.0
|
C2A
|
A:HEM73
|
4.3
|
10.0
|
1.0
|
C3C
|
A:HEM73
|
4.3
|
9.2
|
1.0
|
|
Iron binding site 3 out
of 3 in 1os6
Go back to
Iron Binding Sites List in 1os6
Iron binding site 3 out
of 3 in the Cytochrome C7 (Ppca) From Geobacter Sulfurreducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cytochrome C7 (Ppca) From Geobacter Sulfurreducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe74
b:8.4
occ:1.00
|
FE
|
A:HEM74
|
0.0
|
8.4
|
1.0
|
NB
|
A:HEM74
|
2.0
|
10.7
|
1.0
|
NC
|
A:HEM74
|
2.0
|
10.2
|
1.0
|
NA
|
A:HEM74
|
2.0
|
9.4
|
1.0
|
NE2
|
A:HIS47
|
2.0
|
10.7
|
1.0
|
ND
|
A:HEM74
|
2.0
|
9.5
|
1.0
|
NE2
|
A:HIS69
|
2.0
|
8.5
|
1.0
|
CE1
|
A:HIS69
|
3.0
|
10.2
|
1.0
|
CE1
|
A:HIS47
|
3.0
|
11.0
|
1.0
|
C1C
|
A:HEM74
|
3.0
|
9.8
|
1.0
|
C1A
|
A:HEM74
|
3.0
|
7.4
|
1.0
|
CD2
|
A:HIS47
|
3.0
|
9.1
|
1.0
|
C4B
|
A:HEM74
|
3.0
|
10.8
|
1.0
|
C4A
|
A:HEM74
|
3.0
|
11.6
|
1.0
|
C1B
|
A:HEM74
|
3.0
|
10.3
|
1.0
|
C4D
|
A:HEM74
|
3.0
|
9.2
|
1.0
|
C4C
|
A:HEM74
|
3.0
|
8.9
|
1.0
|
C1D
|
A:HEM74
|
3.0
|
9.0
|
1.0
|
CD2
|
A:HIS69
|
3.1
|
7.3
|
1.0
|
CHC
|
A:HEM74
|
3.4
|
9.1
|
1.0
|
CHA
|
A:HEM74
|
3.4
|
9.1
|
1.0
|
CHD
|
A:HEM74
|
3.4
|
8.2
|
1.0
|
CHB
|
A:HEM74
|
3.4
|
10.8
|
1.0
|
ND1
|
A:HIS47
|
4.1
|
13.3
|
1.0
|
ND1
|
A:HIS69
|
4.1
|
9.3
|
1.0
|
CG
|
A:HIS47
|
4.1
|
11.4
|
1.0
|
CG
|
A:HIS69
|
4.2
|
7.6
|
1.0
|
C2C
|
A:HEM74
|
4.2
|
8.8
|
1.0
|
C3A
|
A:HEM74
|
4.3
|
10.8
|
1.0
|
C2B
|
A:HEM74
|
4.3
|
11.3
|
1.0
|
C2A
|
A:HEM74
|
4.3
|
11.1
|
1.0
|
C3D
|
A:HEM74
|
4.3
|
9.6
|
1.0
|
C3B
|
A:HEM74
|
4.3
|
9.8
|
1.0
|
C2D
|
A:HEM74
|
4.3
|
9.2
|
1.0
|
C3C
|
A:HEM74
|
4.3
|
9.7
|
1.0
|
ND2
|
A:ASN10
|
4.6
|
12.3
|
1.0
|
|
Reference:
P.R.Pokkuluri,
Y.Y.Londer,
N.E.Duke,
W.C.Long,
M.Schiffer.
Family of Cytochrome C7-Type Proteins From Geobacter Sulfurreducens: Structure of One Cytochrome C7 at 1.45 A Resolution. Biochemistry V. 43 849 2004.
ISSN: ISSN 0006-2960
PubMed: 14744127
DOI: 10.1021/BI0301439
Page generated: Sat Aug 3 12:40:23 2024
|