Atomistry » Iron » PDB 1ofj-1ozl » 1out
Atomistry »
  Iron »
    PDB 1ofj-1ozl »
      1out »

Iron in PDB 1out: Trout Hemoglobin I

Protein crystallography data

The structure of Trout Hemoglobin I, PDB code: 1out was solved by J.Tame, J.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.30
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 63.280, 63.280, 312.740, 90.00, 90.00, 120.00
R / Rfree (%) 16.2 / 24.7

Iron Binding Sites:

The binding sites of Iron atom in the Trout Hemoglobin I (pdb code 1out). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Trout Hemoglobin I, PDB code: 1out:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1out

Go back to Iron Binding Sites List in 1out
Iron binding site 1 out of 2 in the Trout Hemoglobin I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Trout Hemoglobin I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe143

b:21.2
occ:1.00
FE A:HEM143 0.0 21.2 1.0
ND A:HEM143 2.0 22.2 1.0
NC A:HEM143 2.0 16.7 1.0
NB A:HEM143 2.0 17.8 1.0
NA A:HEM143 2.1 21.9 1.0
NE2 A:HIS88 2.2 17.4 1.0
CE1 A:HIS88 3.0 19.5 1.0
C1C A:HEM143 3.0 14.4 1.0
C1D A:HEM143 3.0 23.1 1.0
C4D A:HEM143 3.1 22.2 1.0
C4C A:HEM143 3.1 16.9 1.0
C1A A:HEM143 3.1 26.1 1.0
C4B A:HEM143 3.1 16.4 1.0
C1B A:HEM143 3.1 18.2 1.0
C4A A:HEM143 3.1 19.2 1.0
CD2 A:HIS88 3.3 14.9 1.0
CHA A:HEM143 3.4 21.2 1.0
CHC A:HEM143 3.4 9.2 1.0
CHD A:HEM143 3.5 15.3 1.0
CHB A:HEM143 3.5 18.7 1.0
ND1 A:HIS88 4.2 17.2 1.0
NE2 A:HIS59 4.3 31.8 1.0
C3D A:HEM143 4.3 24.2 1.0
C2D A:HEM143 4.3 22.6 1.0
C2C A:HEM143 4.3 17.1 1.0
C3C A:HEM143 4.3 15.1 1.0
C3B A:HEM143 4.3 14.1 1.0
C2B A:HEM143 4.3 14.6 1.0
CD1 A:ILE63 4.3 28.5 1.0
C2A A:HEM143 4.3 29.6 1.0
C3A A:HEM143 4.3 26.2 1.0
CG A:HIS88 4.4 14.4 1.0
CG1 A:ILE63 4.4 17.5 1.0
CD1 A:LEU92 4.7 28.7 1.0
CE1 A:HIS59 4.7 36.3 1.0

Iron binding site 2 out of 2 in 1out

Go back to Iron Binding Sites List in 1out
Iron binding site 2 out of 2 in the Trout Hemoglobin I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Trout Hemoglobin I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe148

b:16.4
occ:1.00
FE B:HEM148 0.0 16.4 1.0
NB B:HEM148 2.0 18.3 1.0
NA B:HEM148 2.0 20.3 1.0
ND B:HEM148 2.0 20.7 1.0
NC B:HEM148 2.0 15.8 1.0
NE2 B:HIS92 2.1 13.1 1.0
CE1 B:HIS92 3.0 15.3 1.0
C4A B:HEM148 3.0 21.2 1.0
C1B B:HEM148 3.0 19.8 1.0
C1A B:HEM148 3.1 23.7 1.0
C4D B:HEM148 3.1 20.5 1.0
C1D B:HEM148 3.1 23.0 1.0
C4B B:HEM148 3.1 21.8 1.0
C4C B:HEM148 3.1 14.3 1.0
C1C B:HEM148 3.1 16.9 1.0
CD2 B:HIS92 3.2 8.3 1.0
CHB B:HEM148 3.4 21.8 1.0
CHD B:HEM148 3.4 18.6 1.0
CHC B:HEM148 3.5 22.0 1.0
CHA B:HEM148 3.5 20.5 1.0
CG2 B:VAL67 4.1 27.4 1.0
NE2 B:HIS63 4.1 23.0 1.0
ND1 B:HIS92 4.2 15.0 1.0
C2B B:HEM148 4.3 20.8 1.0
C3B B:HEM148 4.3 21.9 1.0
C3D B:HEM148 4.3 23.8 1.0
C3A B:HEM148 4.3 21.6 1.0
C2A B:HEM148 4.3 27.1 1.0
C2D B:HEM148 4.3 22.2 1.0
CG B:HIS92 4.3 20.8 1.0
C3C B:HEM148 4.3 13.1 1.0
C2C B:HEM148 4.3 13.7 1.0
CE1 B:HIS63 4.7 25.7 1.0
CD1 B:LEU96 4.9 21.5 1.0

Reference:

J.R.Tame, J.C.Wilson, R.E.Weber. The Crystal Structures of Trout Hb I in the Deoxy and Carbonmonoxy Forms. J.Mol.Biol. V. 259 749 1996.
ISSN: ISSN 0022-2836
PubMed: 8683580
DOI: 10.1006/JMBI.1996.0355
Page generated: Sat Aug 3 12:43:18 2024

Last articles

Cl in 3SDR
Cl in 3SDQ
Cl in 3SCL
Cl in 3SC4
Cl in 3SD7
Cl in 3SBR
Cl in 3SCK
Cl in 3SCJ
Cl in 3SCI
Cl in 3SBP
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy