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Iron in PDB 1pbx: Haemoglobin of the Antarctic Fish Pagothenia Bernacchii: Amino Acid Sequence, Oxygen Equilibria and Crystal Structure of Its Carbonmonoxy Derivative

Protein crystallography data

The structure of Haemoglobin of the Antarctic Fish Pagothenia Bernacchii: Amino Acid Sequence, Oxygen Equilibria and Crystal Structure of Its Carbonmonoxy Derivative, PDB code: 1pbx was solved by G.Fermi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 91.380, 88.540, 55.340, 90.00, 97.16, 90.00
R / Rfree (%) 17.8 / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Haemoglobin of the Antarctic Fish Pagothenia Bernacchii: Amino Acid Sequence, Oxygen Equilibria and Crystal Structure of Its Carbonmonoxy Derivative (pdb code 1pbx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Haemoglobin of the Antarctic Fish Pagothenia Bernacchii: Amino Acid Sequence, Oxygen Equilibria and Crystal Structure of Its Carbonmonoxy Derivative, PDB code: 1pbx:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1pbx

Go back to Iron Binding Sites List in 1pbx
Iron binding site 1 out of 2 in the Haemoglobin of the Antarctic Fish Pagothenia Bernacchii: Amino Acid Sequence, Oxygen Equilibria and Crystal Structure of Its Carbonmonoxy Derivative


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Haemoglobin of the Antarctic Fish Pagothenia Bernacchii: Amino Acid Sequence, Oxygen Equilibria and Crystal Structure of Its Carbonmonoxy Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe144

b:23.9
occ:1.00
FE A:HEM144 0.0 23.9 1.0
C A:CMO145 1.7 42.4 1.0
NC A:HEM144 2.0 19.2 1.0
NB A:HEM144 2.0 22.4 1.0
ND A:HEM144 2.0 23.0 1.0
NA A:HEM144 2.0 28.5 1.0
NE2 A:HIS88 2.1 28.7 1.0
O A:CMO145 2.7 38.7 1.0
C4C A:HEM144 3.0 18.6 1.0
C1C A:HEM144 3.0 17.2 1.0
C1B A:HEM144 3.1 23.9 1.0
C4D A:HEM144 3.1 22.5 1.0
CD2 A:HIS88 3.1 27.8 1.0
C1D A:HEM144 3.1 20.8 1.0
C1A A:HEM144 3.1 30.0 1.0
C4B A:HEM144 3.1 19.5 1.0
C4A A:HEM144 3.1 27.9 1.0
CE1 A:HIS88 3.1 27.2 1.0
CHC A:HEM144 3.4 17.1 1.0
CHA A:HEM144 3.4 26.1 1.0
CHD A:HEM144 3.4 18.0 1.0
CHB A:HEM144 3.5 25.1 1.0
C2C A:HEM144 4.2 17.4 1.0
ND1 A:HIS88 4.2 27.3 1.0
CG A:HIS88 4.2 30.0 1.0
C3C A:HEM144 4.2 17.8 1.0
C3B A:HEM144 4.3 21.9 1.0
C3D A:HEM144 4.3 22.8 1.0
C2D A:HEM144 4.3 21.2 1.0
C2B A:HEM144 4.3 22.5 1.0
C2A A:HEM144 4.3 31.0 1.0
C3A A:HEM144 4.3 28.4 1.0
NE2 A:HIS59 4.3 28.4 1.0
CG2 A:VAL63 4.7 13.0 1.0
CE1 A:HIS59 5.0 29.1 1.0

Iron binding site 2 out of 2 in 1pbx

Go back to Iron Binding Sites List in 1pbx
Iron binding site 2 out of 2 in the Haemoglobin of the Antarctic Fish Pagothenia Bernacchii: Amino Acid Sequence, Oxygen Equilibria and Crystal Structure of Its Carbonmonoxy Derivative


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Haemoglobin of the Antarctic Fish Pagothenia Bernacchii: Amino Acid Sequence, Oxygen Equilibria and Crystal Structure of Its Carbonmonoxy Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe148

b:34.4
occ:1.00
FE B:HEM148 0.0 34.4 1.0
C B:CMO149 1.9 44.3 1.0
ND B:HEM148 2.0 34.3 1.0
NA B:HEM148 2.0 36.0 1.0
NB B:HEM148 2.0 32.7 1.0
NC B:HEM148 2.1 31.4 1.0
NE2 B:HIS92 2.2 34.9 1.0
O B:CMO149 2.8 40.6 1.0
C4D B:HEM148 3.0 34.9 1.0
C1D B:HEM148 3.0 33.9 1.0
C4A B:HEM148 3.1 36.2 1.0
C4B B:HEM148 3.1 31.0 1.0
C1C B:HEM148 3.1 30.6 1.0
CE1 B:HIS92 3.1 33.5 1.0
C4C B:HEM148 3.1 30.8 1.0
C1A B:HEM148 3.1 36.2 1.0
C1B B:HEM148 3.1 31.6 1.0
CD2 B:HIS92 3.1 35.0 1.0
CHD B:HEM148 3.4 30.6 1.0
CHA B:HEM148 3.4 33.9 1.0
CHC B:HEM148 3.5 30.2 1.0
CHB B:HEM148 3.5 31.0 1.0
ND1 B:HIS92 4.2 36.2 1.0
C3D B:HEM148 4.2 37.9 1.0
C2D B:HEM148 4.2 37.3 1.0
CG B:HIS92 4.2 39.4 1.0
NE2 B:HIS63 4.3 34.3 1.0
C3C B:HEM148 4.3 30.5 1.0
C3A B:HEM148 4.3 37.0 1.0
C3B B:HEM148 4.3 30.8 1.0
C2A B:HEM148 4.3 37.4 1.0
C2B B:HEM148 4.3 31.9 1.0
C2C B:HEM148 4.3 29.8 1.0
CG2 B:VAL67 4.4 18.1 1.0

Reference:

L.Camardella, C.Caruso, R.D'avino, G.Di Prisco, B.Rutigliano, M.Tamburrini, G.Fermi, M.F.Perutz. Haemoglobin of the Antarctic Fish Pagothenia Bernacchii. Amino Acid Sequence, Oxygen Equilibria and Crystal Structure of Its Carbonmonoxy Derivative. J.Mol.Biol. V. 224 449 1992.
ISSN: ISSN 0022-2836
PubMed: 1560461
DOI: 10.1016/0022-2836(92)91007-C
Page generated: Sun Dec 13 14:28:03 2020

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