Iron in PDB 1pdx: Putidaredoxin

The binding sites of Iron atom in the Putidaredoxin (pdb code 1pdx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Putidaredoxin, PDB code: 1pdx:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Putidaredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Putidaredoxin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe107 b:0.0 occ:1.00 FE1 A:FES107 0.0 0.0 1.0 S2 A:FES107 2.2 0.0 1.0 SG A:CYS45 2.2 0.0 1.0 SG A:CYS39 2.2 0.0 1.0 S1 A:FES107 2.2 0.0 1.0 FE2 A:FES107 2.6 0.0 1.0 H A:CYS39 2.9 0.0 1.0 HB3 A:CYS39 3.1 0.0 1.0 HB3 A:CYS45 3.2 0.0 1.0 H A:CYS45 3.2 0.0 1.0 CB A:CYS39 3.3 0.0 1.0 CB A:CYS45 3.3 0.0 1.0 H A:SER44 3.4 0.0 1.0 N A:CYS39 3.7 0.0 1.0 SG A:CYS48 3.7 0.0 1.0 HA A:ALA43 3.7 0.0 1.0 N A:CYS45 3.8 0.0 1.0 CA A:CYS45 4.1 0.0 1.0 HB2 A:CYS39 4.1 0.0 1.0 HB2 A:CYS45 4.2 0.0 1.0 CA A:CYS39 4.2 0.0 1.0 H A:ALA43 4.2 0.0 1.0 HA A:ASP38 4.2 0.0 1.0 N A:SER44 4.2 0.0 1.0 HB3 A:CYS86 4.2 0.0 1.0 O A:GLY37 4.3 0.0 1.0 SG A:CYS86 4.4 0.0 1.0 CA A:ALA43 4.5 0.0 1.0 C A:CYS45 4.5 0.0 1.0 HB3 A:CYS48 4.6 0.0 1.0 HD11 A:LEU84 4.6 0.0 1.0 N A:ALA43 4.6 0.0 1.0 O A:CYS45 4.6 0.0 1.0 C A:ASP38 4.7 0.0 1.0 CB A:CYS48 4.8 0.0 1.0 C A:SER44 4.8 0.0 1.0 CB A:CYS86 4.8 0.0 1.0 C A:ALA43 4.8 0.0 1.0 CA A:ASP38 4.9 0.0 1.0 HA A:CYS39 5.0 0.0 1.0 H A:CYS48 5.0 0.0 1.0

Iron binding site 2 out of 2 in the Putidaredoxin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Putidaredoxin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe107 b:0.0 occ:1.00 FE2 A:FES107 0.0 0.0 1.0 SG A:CYS48 2.2 0.0 1.0 SG A:CYS86 2.2 0.0 1.0 S1 A:FES107 2.2 0.0 1.0 S2 A:FES107 2.2 0.0 1.0 HB3 A:LEU84 2.6 0.0 1.0 FE1 A:FES107 2.6 0.0 1.0 HB3 A:CYS86 3.0 0.0 1.0 HD11 A:LEU84 3.2 0.0 1.0 CB A:CYS86 3.2 0.0 1.0 CB A:CYS48 3.2 0.0 1.0 HB2 A:CYS48 3.3 0.0 1.0 HB2 A:LEU84 3.4 0.0 1.0 CB A:LEU84 3.5 0.0 1.0 HB3 A:CYS48 3.5 0.0 1.0 SG A:CYS45 3.6 0.0 1.0 H A:CYS86 3.7 0.0 1.0 HB2 A:CYS86 3.8 0.0 1.0 CD1 A:LEU84 4.0 0.0 1.0 HD12 A:LEU84 4.1 0.0 1.0 SG A:CYS39 4.4 0.0 1.0 CG A:LEU84 4.4 0.0 1.0 N A:CYS86 4.4 0.0 1.0 CA A:CYS86 4.4 0.0 1.0 H A:CYS48 4.5 0.0 1.0 O A:LEU84 4.5 0.0 1.0 CA A:LEU84 4.5 0.0 1.0 CA A:CYS48 4.6 0.0 1.0 C A:LEU84 4.6 0.0 1.0 HA A:ALA43 4.6 0.0 1.0 HE2 A:MET24 4.7 0.0 1.0 HE3 A:MET70 4.7 0.0 1.0 OE1 A:GLN87 4.8 0.0 1.0 HG3 A:MET70 4.8 0.0 1.0 O A:CYS48 4.8 0.0 1.0 HA A:LEU84 4.8 0.0 1.0 HD13 A:LEU84 4.9 0.0 1.0 HA A:CYS86 4.9 0.0 1.0 HE2 A:MET70 5.0 0.0 1.0 HB2 A:MET70 5.0 0.0 1.0 HE22 A:GLN87 5.0 0.0 1.0 H A:CYS39 5.0 0.0 1.0 N A:CYS48 5.0 0.0 1.0 C A:CYS48 5.0 0.0 1.0

T.C.Pochapsky, N.U.Jain, M.Kuti, T.A.Lyons, J.Heymont. A Refined Model For the Solution Structure of Oxidized Putidaredoxin. Biochemistry V. 38 4681 1999.
ISSN: ISSN 0006-2960
PubMed: 10200155
DOI: 10.1021/BI983030B