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Iron in PDB 1pee: Crystal Structure of Nitrophorin 2 Complex with Imidazole

Protein crystallography data

The structure of Crystal Structure of Nitrophorin 2 Complex with Imidazole, PDB code: 1pee was solved by A.Weihsel, W.R.Montfort, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.00 / 1.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 34.680, 34.680, 258.780, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 24

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Nitrophorin 2 Complex with Imidazole (pdb code 1pee). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Nitrophorin 2 Complex with Imidazole, PDB code: 1pee:

Iron binding site 1 out of 1 in 1pee

Go back to Iron Binding Sites List in 1pee
Iron binding site 1 out of 1 in the Crystal Structure of Nitrophorin 2 Complex with Imidazole


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Nitrophorin 2 Complex with Imidazole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:7.3
occ:1.00
FE A:HEM201 0.0 7.3 1.0
NB A:HEM201 2.0 7.9 1.0
NA A:HEM201 2.0 7.2 1.0
NE2 A:HIS57 2.0 6.5 1.0
ND A:HEM201 2.1 7.3 1.0
NC A:HEM201 2.1 6.2 1.0
N1 A:IMD202 2.1 7.5 1.0
CE1 A:HIS57 3.0 5.0 1.0
C4B A:HEM201 3.0 7.5 1.0
C4D A:HEM201 3.0 6.3 1.0
C1A A:HEM201 3.0 8.4 1.0
C1C A:HEM201 3.0 6.8 1.0
C1B A:HEM201 3.1 8.5 1.0
C5 A:IMD202 3.1 10.4 1.0
C2 A:IMD202 3.1 11.6 1.0
CD2 A:HIS57 3.1 6.3 1.0
C1D A:HEM201 3.1 7.7 1.0
C4A A:HEM201 3.1 6.4 1.0
C4C A:HEM201 3.1 8.9 1.0
CHC A:HEM201 3.4 6.8 1.0
CHA A:HEM201 3.4 6.0 1.0
CHB A:HEM201 3.5 7.1 1.0
CHD A:HEM201 3.6 6.6 1.0
ND1 A:HIS57 4.1 4.2 1.0
N3 A:IMD202 4.2 10.3 1.0
CG A:HIS57 4.2 4.8 1.0
C4 A:IMD202 4.2 9.5 1.0
C3B A:HEM201 4.2 7.2 1.0
C2B A:HEM201 4.3 5.7 1.0
C3D A:HEM201 4.3 8.9 1.0
C2D A:HEM201 4.3 9.7 1.0
C2C A:HEM201 4.3 9.8 1.0
C3C A:HEM201 4.3 7.6 1.0
C3A A:HEM201 4.3 8.8 1.0
C2A A:HEM201 4.3 9.1 1.0
CD2 A:LEU132 4.8 11.0 1.0

Reference:

A.Weihsel, W.R.Montfort. Conformational Change and Heme Ruffling in Nitrophorin 2, A Nitric Oxide Carrier From Kissing Bug. To Be Published.
Page generated: Sat Aug 3 13:03:20 2024

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