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Iron in PDB 1pfd: The Solution Structure of High Plant Parsley [2FE-2S] Ferredoxin, uc(Nmr), 18 Structures

Enzymatic activity of The Solution Structure of High Plant Parsley [2FE-2S] Ferredoxin, uc(Nmr), 18 Structures

All present enzymatic activity of The Solution Structure of High Plant Parsley [2FE-2S] Ferredoxin, uc(Nmr), 18 Structures:
1.7.7.2;

Iron Binding Sites:

The binding sites of Iron atom in the The Solution Structure of High Plant Parsley [2FE-2S] Ferredoxin, uc(Nmr), 18 Structures (pdb code 1pfd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The Solution Structure of High Plant Parsley [2FE-2S] Ferredoxin, uc(Nmr), 18 Structures, PDB code: 1pfd:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1pfd

Go back to Iron Binding Sites List in 1pfd
Iron binding site 1 out of 2 in the The Solution Structure of High Plant Parsley [2FE-2S] Ferredoxin, uc(Nmr), 18 Structures


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Solution Structure of High Plant Parsley [2FE-2S] Ferredoxin, uc(Nmr), 18 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe97

b:0.0
occ:1.00
FE1 A:FES97 0.0 0.0 1.0
S2 A:FES97 2.2 0.0 1.0
S1 A:FES97 2.2 0.0 1.0
SG A:CYS44 2.3 0.0 1.0
SG A:CYS39 2.3 0.0 1.0
FE2 A:FES97 2.6 0.0 1.0
HB3 A:CYS39 3.3 0.0 1.0
CB A:CYS39 3.4 0.0 1.0
HB2 A:CYS44 3.4 0.0 1.0
H A:GLY42 3.4 0.0 1.0
CB A:CYS44 3.4 0.0 1.0
H A:ALA41 3.5 0.0 1.0
HB3 A:CYS44 3.7 0.0 1.0
O A:CYS39 3.8 0.0 1.0
C A:CYS39 3.9 0.0 1.0
H A:CYS39 3.9 0.0 1.0
H A:SER43 4.0 0.0 1.0
CA A:CYS39 4.0 0.0 1.0
SG A:CYS47 4.1 0.0 1.0
N A:CYS39 4.2 0.0 1.0
HB2 A:CYS39 4.3 0.0 1.0
HA A:ARG40 4.3 0.0 1.0
HB2 A:ALA41 4.3 0.0 1.0
HB2 A:SER38 4.3 0.0 1.0
N A:GLY42 4.4 0.0 1.0
N A:ALA41 4.5 0.0 1.0
HE1 A:HIS78 4.5 0.0 1.0
N A:ARG40 4.5 0.0 1.0
HA2 A:GLY42 4.6 0.0 1.0
SG A:CYS77 4.6 0.0 1.0
CA A:CYS44 4.8 0.0 1.0
H A:SER38 4.8 0.0 1.0
H A:ARG40 4.9 0.0 1.0
HB3 A:CYS47 4.9 0.0 1.0
CA A:ARG40 4.9 0.0 1.0
N A:SER43 4.9 0.0 1.0
HA A:CYS44 5.0 0.0 1.0
HD23 A:LEU75 5.0 0.0 1.0

Iron binding site 2 out of 2 in 1pfd

Go back to Iron Binding Sites List in 1pfd
Iron binding site 2 out of 2 in the The Solution Structure of High Plant Parsley [2FE-2S] Ferredoxin, uc(Nmr), 18 Structures


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Solution Structure of High Plant Parsley [2FE-2S] Ferredoxin, uc(Nmr), 18 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe97

b:0.0
occ:1.00
FE2 A:FES97 0.0 0.0 1.0
S2 A:FES97 2.2 0.0 1.0
S1 A:FES97 2.2 0.0 1.0
SG A:CYS47 2.3 0.0 1.0
SG A:CYS77 2.4 0.0 1.0
FE1 A:FES97 2.6 0.0 1.0
HB2 A:CYS47 3.1 0.0 1.0
CB A:CYS47 3.1 0.0 1.0
HB3 A:CYS47 3.1 0.0 1.0
HB2 A:CYS77 3.1 0.0 1.0
CB A:CYS77 3.4 0.0 1.0
HD23 A:LEU75 3.5 0.0 1.0
O A:CYS39 3.5 0.0 1.0
HB3 A:CYS77 3.8 0.0 1.0
H A:CYS39 3.8 0.0 1.0
H A:SER38 3.9 0.0 1.0
HB2 A:CYS44 4.0 0.0 1.0
HD13 A:LEU75 4.3 0.0 1.0
HA A:ARG40 4.3 0.0 1.0
HG A:LEU75 4.4 0.0 1.0
SG A:CYS44 4.4 0.0 1.0
C A:CYS39 4.4 0.0 1.0
CD2 A:LEU75 4.4 0.0 1.0
HB3 A:CYS44 4.4 0.0 1.0
SG A:CYS39 4.4 0.0 1.0
HE1 A:HIS78 4.5 0.0 1.0
HD1 A:HIS78 4.5 0.0 1.0
CB A:CYS44 4.5 0.0 1.0
HD22 A:LEU75 4.5 0.0 1.0
CA A:CYS47 4.6 0.0 1.0
H A:ALA41 4.6 0.0 1.0
N A:CYS39 4.6 0.0 1.0
HA A:TYR37 4.6 0.0 1.0
CA A:CYS77 4.7 0.0 1.0
H A:GLY42 4.7 0.0 1.0
HB2 A:SER38 4.7 0.0 1.0
H A:CYS77 4.8 0.0 1.0
HA2 A:GLY42 4.8 0.0 1.0
HD2 A:TYR37 4.9 0.0 1.0
CG A:LEU75 4.9 0.0 1.0
N A:CYS77 4.9 0.0 1.0
N A:SER38 4.9 0.0 1.0
O A:CYS47 4.9 0.0 1.0
CA A:CYS39 4.9 0.0 1.0

Reference:

S.C.Im, G.Liu, C.Luchinat, A.G.Sykes, I.Bertini. The Solution Structure of Parsley [2FE-2S]Ferredoxin. Eur.J.Biochem. V. 258 465 1998.
ISSN: ISSN 0014-2956
PubMed: 9874213
DOI: 10.1046/J.1432-1327.1998.2580465.X
Page generated: Sun Dec 13 14:28:12 2020

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