Iron in PDB 1ppj: Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin
Enzymatic activity of Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin
All present enzymatic activity of Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin:
1.10.2.2;
Protein crystallography data
The structure of Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin, PDB code: 1ppj
was solved by
L.S.Huang,
D.Cobessi,
E.Y.Tung,
E.A.Berry,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
93.53 /
2.10
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
128.530,
168.748,
231.533,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
22.4 /
26
|
Iron Binding Sites:
The binding sites of Iron atom in the Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin
(pdb code 1ppj). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin, PDB code: 1ppj:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 1ppj
Go back to
Iron Binding Sites List in 1ppj
Iron binding site 1 out
of 10 in the Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:20.1
occ:1.00
|
FE
|
C:HEM501
|
0.0
|
20.1
|
1.0
|
|
NA
|
C:HEM501
|
2.0
|
31.4
|
1.0
|
|
NC
|
C:HEM501
|
2.0
|
30.6
|
1.0
|
|
NB
|
C:HEM501
|
2.0
|
33.2
|
1.0
|
|
ND
|
C:HEM501
|
2.0
|
32.3
|
1.0
|
|
NE2
|
C:HIS182
|
2.0
|
30.4
|
1.0
|
|
NE2
|
C:HIS83
|
2.0
|
27.9
|
1.0
|
|
CE1
|
C:HIS182
|
2.8
|
26.4
|
1.0
|
|
CE1
|
C:HIS83
|
2.9
|
29.7
|
1.0
|
|
C1A
|
C:HEM501
|
3.0
|
32.3
|
1.0
|
|
C4A
|
C:HEM501
|
3.0
|
31.2
|
1.0
|
|
C4C
|
C:HEM501
|
3.0
|
30.4
|
1.0
|
|
C4B
|
C:HEM501
|
3.0
|
31.7
|
1.0
|
|
C1C
|
C:HEM501
|
3.0
|
31.6
|
1.0
|
|
C4D
|
C:HEM501
|
3.1
|
32.8
|
1.0
|
|
C1B
|
C:HEM501
|
3.1
|
32.4
|
1.0
|
|
C1D
|
C:HEM501
|
3.1
|
30.9
|
1.0
|
|
CD2
|
C:HIS83
|
3.1
|
29.3
|
1.0
|
|
CD2
|
C:HIS182
|
3.1
|
28.6
|
1.0
|
|
CHC
|
C:HEM501
|
3.4
|
31.3
|
1.0
|
|
CHA
|
C:HEM501
|
3.4
|
33.1
|
1.0
|
|
CHB
|
C:HEM501
|
3.4
|
31.3
|
1.0
|
|
CHD
|
C:HEM501
|
3.4
|
29.8
|
1.0
|
|
ND1
|
C:HIS182
|
4.0
|
24.6
|
1.0
|
|
ND1
|
C:HIS83
|
4.0
|
28.1
|
1.0
|
|
CG
|
C:HIS182
|
4.2
|
28.0
|
1.0
|
|
CG
|
C:HIS83
|
4.2
|
28.7
|
1.0
|
|
C2A
|
C:HEM501
|
4.2
|
29.6
|
1.0
|
|
C3A
|
C:HEM501
|
4.3
|
30.2
|
1.0
|
|
C3C
|
C:HEM501
|
4.3
|
29.1
|
1.0
|
|
C2C
|
C:HEM501
|
4.3
|
31.7
|
1.0
|
|
C3B
|
C:HEM501
|
4.3
|
33.2
|
1.0
|
|
C2B
|
C:HEM501
|
4.3
|
33.4
|
1.0
|
|
C2D
|
C:HEM501
|
4.3
|
33.2
|
1.0
|
|
C3D
|
C:HEM501
|
4.3
|
32.1
|
1.0
|
|
CA
|
C:GLY130
|
4.8
|
27.8
|
1.0
|
|
NE2
|
C:GLN44
|
4.9
|
30.1
|
1.0
|
|
Iron binding site 2 out
of 10 in 1ppj
Go back to
Iron Binding Sites List in 1ppj
Iron binding site 2 out
of 10 in the Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe502
b:30.8
occ:1.00
|
FE
|
C:HEM502
|
0.0
|
30.8
|
1.0
|
|
ND
|
C:HEM502
|
2.0
|
27.2
|
1.0
|
|
NB
|
C:HEM502
|
2.0
|
28.2
|
1.0
|
|
NC
|
C:HEM502
|
2.0
|
27.3
|
1.0
|
|
NA
|
C:HEM502
|
2.0
|
28.5
|
1.0
|
|
NE2
|
C:HIS97
|
2.0
|
24.0
|
1.0
|
|
NE2
|
C:HIS196
|
2.0
|
27.8
|
1.0
|
|
CD2
|
C:HIS196
|
3.0
|
31.0
|
1.0
|
|
C4C
|
C:HEM502
|
3.0
|
32.6
|
1.0
|
|
CE1
|
C:HIS97
|
3.0
|
24.0
|
1.0
|
|
CD2
|
C:HIS97
|
3.0
|
23.4
|
1.0
|
|
C1D
|
C:HEM502
|
3.0
|
23.1
|
1.0
|
|
C4A
|
C:HEM502
|
3.0
|
29.2
|
1.0
|
|
CE1
|
C:HIS196
|
3.0
|
29.9
|
1.0
|
|
C1B
|
C:HEM502
|
3.0
|
27.4
|
1.0
|
|
C4D
|
C:HEM502
|
3.1
|
26.6
|
1.0
|
|
C4B
|
C:HEM502
|
3.1
|
28.1
|
1.0
|
|
C1A
|
C:HEM502
|
3.1
|
29.9
|
1.0
|
|
C1C
|
C:HEM502
|
3.1
|
30.6
|
1.0
|
|
CHD
|
C:HEM502
|
3.3
|
25.9
|
1.0
|
|
CHB
|
C:HEM502
|
3.4
|
26.9
|
1.0
|
|
CHC
|
C:HEM502
|
3.4
|
28.3
|
1.0
|
|
CHA
|
C:HEM502
|
3.4
|
26.6
|
1.0
|
|
ND1
|
C:HIS97
|
4.1
|
24.1
|
1.0
|
|
ND1
|
C:HIS196
|
4.1
|
27.2
|
1.0
|
|
CG
|
C:HIS196
|
4.1
|
28.7
|
1.0
|
|
CG
|
C:HIS97
|
4.2
|
24.1
|
1.0
|
|
C3C
|
C:HEM502
|
4.3
|
34.3
|
1.0
|
|
C2C
|
C:HEM502
|
4.3
|
35.3
|
1.0
|
|
C2D
|
C:HEM502
|
4.3
|
23.5
|
1.0
|
|
C2B
|
C:HEM502
|
4.3
|
28.7
|
1.0
|
|
C3D
|
C:HEM502
|
4.3
|
25.4
|
1.0
|
|
C3A
|
C:HEM502
|
4.3
|
31.2
|
1.0
|
|
C2A
|
C:HEM502
|
4.3
|
28.9
|
1.0
|
|
C3B
|
C:HEM502
|
4.3
|
29.8
|
1.0
|
|
Iron binding site 3 out
of 10 in 1ppj
Go back to
Iron Binding Sites List in 1ppj
Iron binding site 3 out
of 10 in the Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe501
b:36.8
occ:1.00
|
FE
|
D:HEC501
|
0.0
|
36.8
|
1.0
|
|
NB
|
D:HEC501
|
2.0
|
42.7
|
1.0
|
|
ND
|
D:HEC501
|
2.0
|
40.6
|
1.0
|
|
NC
|
D:HEC501
|
2.0
|
45.0
|
1.0
|
|
NA
|
D:HEC501
|
2.0
|
43.9
|
1.0
|
|
NE2
|
D:HIS41
|
2.0
|
38.8
|
1.0
|
|
SD
|
D:MET160
|
2.1
|
41.2
|
1.0
|
|
CE1
|
D:HIS41
|
3.0
|
34.4
|
1.0
|
|
CD2
|
D:HIS41
|
3.0
|
34.7
|
1.0
|
|
C4B
|
D:HEC501
|
3.0
|
43.6
|
1.0
|
|
C4D
|
D:HEC501
|
3.0
|
38.4
|
1.0
|
|
C1C
|
D:HEC501
|
3.0
|
43.4
|
1.0
|
|
C1B
|
D:HEC501
|
3.0
|
41.6
|
1.0
|
|
C1D
|
D:HEC501
|
3.0
|
39.9
|
1.0
|
|
C1A
|
D:HEC501
|
3.0
|
41.2
|
1.0
|
|
C4A
|
D:HEC501
|
3.1
|
43.0
|
1.0
|
|
C4C
|
D:HEC501
|
3.1
|
44.8
|
1.0
|
|
CHC
|
D:HEC501
|
3.3
|
43.2
|
1.0
|
|
CHA
|
D:HEC501
|
3.4
|
38.3
|
1.0
|
|
CHB
|
D:HEC501
|
3.4
|
41.1
|
1.0
|
|
CHD
|
D:HEC501
|
3.4
|
41.3
|
1.0
|
|
CG
|
D:MET160
|
3.4
|
42.0
|
1.0
|
|
CE
|
D:MET160
|
3.5
|
38.6
|
1.0
|
|
ND1
|
D:HIS41
|
4.1
|
37.3
|
1.0
|
|
CB
|
D:MET160
|
4.1
|
43.2
|
1.0
|
|
CG
|
D:HIS41
|
4.1
|
36.4
|
1.0
|
|
C2B
|
D:HEC501
|
4.3
|
40.1
|
1.0
|
|
C3D
|
D:HEC501
|
4.3
|
36.8
|
1.0
|
|
C3B
|
D:HEC501
|
4.3
|
41.3
|
1.0
|
|
C2D
|
D:HEC501
|
4.3
|
37.1
|
1.0
|
|
C2A
|
D:HEC501
|
4.3
|
41.5
|
1.0
|
|
C2C
|
D:HEC501
|
4.3
|
43.9
|
1.0
|
|
C3A
|
D:HEC501
|
4.3
|
40.0
|
1.0
|
|
C3C
|
D:HEC501
|
4.3
|
45.0
|
1.0
|
|
Iron binding site 4 out
of 10 in 1ppj
Go back to
Iron Binding Sites List in 1ppj
Iron binding site 4 out
of 10 in the Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe501
b:41.2
occ:1.00
|
FE1
|
E:FES501
|
0.0
|
41.2
|
1.0
|
|
S1
|
E:FES501
|
2.2
|
43.3
|
1.0
|
|
SG
|
E:CYS158
|
2.2
|
43.9
|
1.0
|
|
SG
|
E:CYS139
|
2.3
|
47.3
|
1.0
|
|
S2
|
E:FES501
|
2.3
|
41.3
|
1.0
|
|
FE2
|
E:FES501
|
2.8
|
43.1
|
1.0
|
|
CB
|
E:CYS139
|
3.1
|
42.0
|
1.0
|
|
CB
|
E:CYS158
|
3.1
|
46.6
|
1.0
|
|
CB
|
E:HIS141
|
3.9
|
41.1
|
1.0
|
|
OG
|
E:SER163
|
4.3
|
48.8
|
1.0
|
|
CB
|
E:SER163
|
4.3
|
49.4
|
1.0
|
|
CB
|
E:CYS160
|
4.4
|
41.7
|
1.0
|
|
ND1
|
E:HIS141
|
4.4
|
40.8
|
1.0
|
|
N
|
E:HIS161
|
4.5
|
44.1
|
1.0
|
|
CA
|
E:CYS158
|
4.5
|
46.1
|
1.0
|
|
CB
|
E:CYS144
|
4.5
|
42.7
|
1.0
|
|
CA
|
E:CYS139
|
4.6
|
42.1
|
1.0
|
|
ND1
|
E:HIS161
|
4.6
|
39.7
|
1.0
|
|
N
|
E:LEU142
|
4.6
|
41.0
|
1.0
|
|
CG
|
E:HIS141
|
4.7
|
41.9
|
1.0
|
|
N
|
E:CYS144
|
4.8
|
42.1
|
1.0
|
|
O
|
E:CYS158
|
4.8
|
42.6
|
1.0
|
|
C
|
E:CYS158
|
4.8
|
45.4
|
1.0
|
|
N
|
E:CYS160
|
4.9
|
44.9
|
1.0
|
|
N
|
E:HIS141
|
4.9
|
38.4
|
1.0
|
|
CA
|
E:HIS141
|
5.0
|
41.2
|
1.0
|
|
Iron binding site 5 out
of 10 in 1ppj
Go back to
Iron Binding Sites List in 1ppj
Iron binding site 5 out
of 10 in the Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe501
b:43.1
occ:1.00
|
FE2
|
E:FES501
|
0.0
|
43.1
|
1.0
|
|
ND1
|
E:HIS161
|
2.1
|
39.7
|
1.0
|
|
ND1
|
E:HIS141
|
2.1
|
40.8
|
1.0
|
|
S2
|
E:FES501
|
2.2
|
41.3
|
1.0
|
|
S1
|
E:FES501
|
2.3
|
43.3
|
1.0
|
|
FE1
|
E:FES501
|
2.8
|
41.2
|
1.0
|
|
CG
|
E:HIS161
|
3.1
|
40.3
|
1.0
|
|
CG
|
E:HIS141
|
3.1
|
41.9
|
1.0
|
|
CE1
|
E:HIS161
|
3.1
|
37.8
|
1.0
|
|
CE1
|
E:HIS141
|
3.1
|
42.6
|
1.0
|
|
CB
|
E:HIS161
|
3.3
|
41.0
|
1.0
|
|
CB
|
E:HIS141
|
3.3
|
41.1
|
1.0
|
|
N
|
E:HIS161
|
3.7
|
44.1
|
1.0
|
|
N
|
E:LEU142
|
4.0
|
41.0
|
1.0
|
|
CA
|
E:HIS161
|
4.0
|
43.4
|
1.0
|
|
CB
|
E:CYS160
|
4.1
|
41.7
|
1.0
|
|
CD2
|
E:HIS161
|
4.2
|
39.0
|
1.0
|
|
NE2
|
E:HIS161
|
4.2
|
37.0
|
1.0
|
|
CD2
|
E:HIS141
|
4.2
|
42.0
|
1.0
|
|
NE2
|
E:HIS141
|
4.2
|
41.1
|
1.0
|
|
CB
|
E:LEU142
|
4.3
|
35.5
|
1.0
|
|
C
|
E:CYS160
|
4.3
|
44.4
|
1.0
|
|
SG
|
E:CYS139
|
4.4
|
47.3
|
1.0
|
|
SG
|
E:CYS158
|
4.5
|
43.9
|
1.0
|
|
CG
|
E:LEU142
|
4.6
|
35.2
|
1.0
|
|
CA
|
E:HIS141
|
4.6
|
41.2
|
1.0
|
|
CD1
|
E:LEU142
|
4.7
|
31.0
|
1.0
|
|
CA
|
E:LEU142
|
4.7
|
39.7
|
1.0
|
|
CG
|
E:PRO175
|
4.7
|
45.5
|
1.0
|
|
C
|
E:HIS141
|
4.7
|
42.3
|
1.0
|
|
CA
|
E:CYS160
|
4.8
|
43.5
|
1.0
|
|
C
|
E:HIS161
|
4.8
|
45.0
|
1.0
|
|
OG
|
E:SER163
|
5.0
|
48.8
|
1.0
|
|
Iron binding site 6 out
of 10 in 1ppj
Go back to
Iron Binding Sites List in 1ppj
Iron binding site 6 out
of 10 in the Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe501
b:33.4
occ:1.00
|
FE
|
P:HEM501
|
0.0
|
33.4
|
1.0
|
|
NA
|
P:HEM501
|
2.0
|
34.5
|
1.0
|
|
NC
|
P:HEM501
|
2.0
|
33.1
|
1.0
|
|
ND
|
P:HEM501
|
2.0
|
34.0
|
1.0
|
|
NE2
|
P:HIS83
|
2.0
|
34.5
|
1.0
|
|
NE2
|
P:HIS182
|
2.0
|
30.0
|
1.0
|
|
NB
|
P:HEM501
|
2.0
|
35.1
|
1.0
|
|
CE1
|
P:HIS182
|
2.9
|
31.5
|
1.0
|
|
CE1
|
P:HIS83
|
2.9
|
33.7
|
1.0
|
|
C1A
|
P:HEM501
|
3.0
|
35.1
|
1.0
|
|
C4C
|
P:HEM501
|
3.0
|
34.1
|
1.0
|
|
C4D
|
P:HEM501
|
3.0
|
34.5
|
1.0
|
|
C1D
|
P:HEM501
|
3.0
|
33.5
|
1.0
|
|
C4B
|
P:HEM501
|
3.0
|
36.1
|
1.0
|
|
C1C
|
P:HEM501
|
3.1
|
35.4
|
1.0
|
|
C4A
|
P:HEM501
|
3.1
|
34.8
|
1.0
|
|
C1B
|
P:HEM501
|
3.1
|
35.4
|
1.0
|
|
CD2
|
P:HIS83
|
3.1
|
32.6
|
1.0
|
|
CD2
|
P:HIS182
|
3.1
|
30.3
|
1.0
|
|
CHD
|
P:HEM501
|
3.4
|
31.5
|
1.0
|
|
CHA
|
P:HEM501
|
3.4
|
32.6
|
1.0
|
|
CHC
|
P:HEM501
|
3.4
|
34.7
|
1.0
|
|
CHB
|
P:HEM501
|
3.4
|
34.8
|
1.0
|
|
ND1
|
P:HIS182
|
4.0
|
29.9
|
1.0
|
|
ND1
|
P:HIS83
|
4.0
|
32.7
|
1.0
|
|
CG
|
P:HIS182
|
4.2
|
29.4
|
1.0
|
|
CG
|
P:HIS83
|
4.2
|
32.0
|
1.0
|
|
C2A
|
P:HEM501
|
4.3
|
36.1
|
1.0
|
|
C3C
|
P:HEM501
|
4.3
|
35.2
|
1.0
|
|
C2C
|
P:HEM501
|
4.3
|
35.7
|
1.0
|
|
C3A
|
P:HEM501
|
4.3
|
36.1
|
1.0
|
|
C3D
|
P:HEM501
|
4.3
|
34.6
|
1.0
|
|
C2D
|
P:HEM501
|
4.3
|
33.2
|
1.0
|
|
C3B
|
P:HEM501
|
4.3
|
35.8
|
1.0
|
|
C2B
|
P:HEM501
|
4.3
|
34.2
|
1.0
|
|
CA
|
P:GLY130
|
4.7
|
33.3
|
1.0
|
|
NE2
|
P:GLN44
|
4.9
|
33.8
|
1.0
|
|
Iron binding site 7 out
of 10 in 1ppj
Go back to
Iron Binding Sites List in 1ppj
Iron binding site 7 out
of 10 in the Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe502
b:40.5
occ:1.00
|
FE
|
P:HEM502
|
0.0
|
40.5
|
1.0
|
|
NC
|
P:HEM502
|
2.0
|
31.9
|
1.0
|
|
NB
|
P:HEM502
|
2.0
|
30.9
|
1.0
|
|
NA
|
P:HEM502
|
2.0
|
28.8
|
1.0
|
|
ND
|
P:HEM502
|
2.0
|
30.8
|
1.0
|
|
NE2
|
P:HIS97
|
2.0
|
31.1
|
1.0
|
|
NE2
|
P:HIS196
|
2.0
|
30.7
|
1.0
|
|
CD2
|
P:HIS196
|
3.0
|
35.5
|
1.0
|
|
CD2
|
P:HIS97
|
3.0
|
33.9
|
1.0
|
|
CE1
|
P:HIS97
|
3.0
|
32.5
|
1.0
|
|
C4C
|
P:HEM502
|
3.0
|
32.7
|
1.0
|
|
C1D
|
P:HEM502
|
3.0
|
34.4
|
1.0
|
|
C1B
|
P:HEM502
|
3.0
|
32.1
|
1.0
|
|
CE1
|
P:HIS196
|
3.0
|
31.8
|
1.0
|
|
C4B
|
P:HEM502
|
3.0
|
34.0
|
1.0
|
|
C1C
|
P:HEM502
|
3.1
|
31.3
|
1.0
|
|
C4A
|
P:HEM502
|
3.1
|
30.5
|
1.0
|
|
C4D
|
P:HEM502
|
3.1
|
31.9
|
1.0
|
|
C1A
|
P:HEM502
|
3.1
|
29.7
|
1.0
|
|
CHD
|
P:HEM502
|
3.3
|
34.9
|
1.0
|
|
CHB
|
P:HEM502
|
3.4
|
30.0
|
1.0
|
|
CHC
|
P:HEM502
|
3.4
|
31.4
|
1.0
|
|
CHA
|
P:HEM502
|
3.5
|
31.8
|
1.0
|
|
ND1
|
P:HIS97
|
4.1
|
31.3
|
1.0
|
|
CG
|
P:HIS196
|
4.1
|
33.0
|
1.0
|
|
ND1
|
P:HIS196
|
4.1
|
31.4
|
1.0
|
|
CG
|
P:HIS97
|
4.1
|
34.1
|
1.0
|
|
C3C
|
P:HEM502
|
4.3
|
34.6
|
1.0
|
|
C2C
|
P:HEM502
|
4.3
|
33.3
|
1.0
|
|
C2D
|
P:HEM502
|
4.3
|
32.7
|
1.0
|
|
C2B
|
P:HEM502
|
4.3
|
32.9
|
1.0
|
|
C3B
|
P:HEM502
|
4.3
|
33.7
|
1.0
|
|
C3A
|
P:HEM502
|
4.3
|
33.2
|
1.0
|
|
C2A
|
P:HEM502
|
4.3
|
31.3
|
1.0
|
|
C3D
|
P:HEM502
|
4.3
|
31.7
|
1.0
|
|
Iron binding site 8 out
of 10 in 1ppj
Go back to
Iron Binding Sites List in 1ppj
Iron binding site 8 out
of 10 in the Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Fe501
b:38.1
occ:1.00
|
FE
|
Q:HEC501
|
0.0
|
38.1
|
1.0
|
|
NB
|
Q:HEC501
|
2.0
|
45.3
|
1.0
|
|
NA
|
Q:HEC501
|
2.0
|
48.4
|
1.0
|
|
NC
|
Q:HEC501
|
2.0
|
48.4
|
1.0
|
|
ND
|
Q:HEC501
|
2.0
|
46.9
|
1.0
|
|
NE2
|
Q:HIS41
|
2.0
|
49.4
|
1.0
|
|
SD
|
Q:MET160
|
2.1
|
48.7
|
1.0
|
|
CE1
|
Q:HIS41
|
3.0
|
45.0
|
1.0
|
|
C1B
|
Q:HEC501
|
3.0
|
44.4
|
1.0
|
|
C1D
|
Q:HEC501
|
3.0
|
46.6
|
1.0
|
|
C4A
|
Q:HEC501
|
3.0
|
47.9
|
1.0
|
|
C4C
|
Q:HEC501
|
3.0
|
47.6
|
1.0
|
|
CD2
|
Q:HIS41
|
3.0
|
47.2
|
1.0
|
|
C1A
|
Q:HEC501
|
3.0
|
49.2
|
1.0
|
|
C1C
|
Q:HEC501
|
3.0
|
45.4
|
1.0
|
|
C4B
|
Q:HEC501
|
3.0
|
45.6
|
1.0
|
|
C4D
|
Q:HEC501
|
3.1
|
46.8
|
1.0
|
|
CHB
|
Q:HEC501
|
3.3
|
45.3
|
1.0
|
|
CHD
|
Q:HEC501
|
3.4
|
46.8
|
1.0
|
|
CHC
|
Q:HEC501
|
3.4
|
43.2
|
1.0
|
|
CHA
|
Q:HEC501
|
3.4
|
47.2
|
1.0
|
|
CG
|
Q:MET160
|
3.5
|
41.7
|
1.0
|
|
CE
|
Q:MET160
|
3.5
|
39.9
|
1.0
|
|
ND1
|
Q:HIS41
|
4.1
|
44.8
|
1.0
|
|
CB
|
Q:MET160
|
4.1
|
42.0
|
1.0
|
|
CG
|
Q:HIS41
|
4.1
|
45.4
|
1.0
|
|
C2B
|
Q:HEC501
|
4.2
|
40.7
|
1.0
|
|
C2A
|
Q:HEC501
|
4.2
|
47.4
|
1.0
|
|
C2D
|
Q:HEC501
|
4.2
|
46.2
|
1.0
|
|
C3B
|
Q:HEC501
|
4.3
|
43.9
|
1.0
|
|
C3A
|
Q:HEC501
|
4.3
|
47.3
|
1.0
|
|
C3D
|
Q:HEC501
|
4.3
|
45.1
|
1.0
|
|
C3C
|
Q:HEC501
|
4.3
|
47.1
|
1.0
|
|
C2C
|
Q:HEC501
|
4.3
|
45.3
|
1.0
|
|
Iron binding site 9 out
of 10 in 1ppj
Go back to
Iron Binding Sites List in 1ppj
Iron binding site 9 out
of 10 in the Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Fe501
b:35.6
occ:1.00
|
FE1
|
R:FES501
|
0.0
|
35.6
|
1.0
|
|
S2
|
R:FES501
|
2.2
|
37.2
|
1.0
|
|
S1
|
R:FES501
|
2.2
|
37.5
|
1.0
|
|
SG
|
R:CYS158
|
2.3
|
37.8
|
1.0
|
|
SG
|
R:CYS139
|
2.3
|
39.3
|
1.0
|
|
FE2
|
R:FES501
|
2.7
|
35.4
|
1.0
|
|
CB
|
R:CYS139
|
3.1
|
37.9
|
1.0
|
|
CB
|
R:CYS158
|
3.1
|
37.3
|
1.0
|
|
CB
|
R:HIS141
|
3.9
|
35.5
|
1.0
|
|
CB
|
R:CYS160
|
4.3
|
36.0
|
1.0
|
|
CB
|
R:SER163
|
4.4
|
36.0
|
1.0
|
|
OG
|
R:SER163
|
4.4
|
32.9
|
1.0
|
|
ND1
|
R:HIS141
|
4.4
|
37.7
|
1.0
|
|
N
|
R:HIS161
|
4.5
|
36.2
|
1.0
|
|
CB
|
R:CYS144
|
4.5
|
34.3
|
1.0
|
|
ND1
|
R:HIS161
|
4.5
|
41.0
|
1.0
|
|
CA
|
R:CYS158
|
4.5
|
36.4
|
1.0
|
|
N
|
R:LEU142
|
4.6
|
36.2
|
1.0
|
|
CA
|
R:CYS139
|
4.6
|
37.5
|
1.0
|
|
CG
|
R:HIS141
|
4.6
|
37.5
|
1.0
|
|
N
|
R:CYS144
|
4.7
|
35.2
|
1.0
|
|
O
|
R:CYS158
|
4.8
|
36.0
|
1.0
|
|
C
|
R:CYS158
|
4.8
|
36.0
|
1.0
|
|
N
|
R:CYS160
|
4.9
|
39.2
|
1.0
|
|
N
|
R:HIS141
|
5.0
|
35.1
|
1.0
|
|
CA
|
R:HIS141
|
5.0
|
35.8
|
1.0
|
|
Iron binding site 10 out
of 10 in 1ppj
Go back to
Iron Binding Sites List in 1ppj
Iron binding site 10 out
of 10 in the Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Bovine Cytochrome BC1 Complex with Stigmatellin and Antimycin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Fe501
b:35.4
occ:1.00
|
FE2
|
R:FES501
|
0.0
|
35.4
|
1.0
|
|
ND1
|
R:HIS141
|
2.1
|
37.7
|
1.0
|
|
ND1
|
R:HIS161
|
2.1
|
41.0
|
1.0
|
|
S2
|
R:FES501
|
2.2
|
37.2
|
1.0
|
|
S1
|
R:FES501
|
2.3
|
37.5
|
1.0
|
|
FE1
|
R:FES501
|
2.7
|
35.6
|
1.0
|
|
CG
|
R:HIS161
|
3.1
|
40.5
|
1.0
|
|
CG
|
R:HIS141
|
3.1
|
37.5
|
1.0
|
|
CE1
|
R:HIS141
|
3.2
|
38.5
|
1.0
|
|
CE1
|
R:HIS161
|
3.2
|
42.7
|
1.0
|
|
CB
|
R:HIS161
|
3.3
|
37.1
|
1.0
|
|
CB
|
R:HIS141
|
3.3
|
35.5
|
1.0
|
|
N
|
R:HIS161
|
3.6
|
36.2
|
1.0
|
|
N
|
R:LEU142
|
4.0
|
36.2
|
1.0
|
|
CA
|
R:HIS161
|
4.0
|
35.9
|
1.0
|
|
CB
|
R:CYS160
|
4.1
|
36.0
|
1.0
|
|
CD2
|
R:HIS161
|
4.2
|
42.5
|
1.0
|
|
CD2
|
R:HIS141
|
4.2
|
34.5
|
1.0
|
|
NE2
|
R:HIS141
|
4.2
|
35.4
|
1.0
|
|
NE2
|
R:HIS161
|
4.3
|
42.6
|
1.0
|
|
CB
|
R:LEU142
|
4.3
|
32.3
|
1.0
|
|
SG
|
R:CYS139
|
4.3
|
39.3
|
1.0
|
|
C
|
R:CYS160
|
4.4
|
37.7
|
1.0
|
|
SG
|
R:CYS158
|
4.6
|
37.8
|
1.0
|
|
CG
|
R:LEU142
|
4.6
|
35.2
|
1.0
|
|
CG
|
R:PRO175
|
4.6
|
38.5
|
1.0
|
|
CA
|
R:HIS141
|
4.6
|
35.8
|
1.0
|
|
CD1
|
R:LEU142
|
4.7
|
33.9
|
1.0
|
|
CA
|
R:LEU142
|
4.7
|
34.1
|
1.0
|
|
C
|
R:HIS141
|
4.7
|
36.5
|
1.0
|
|
CA
|
R:CYS160
|
4.8
|
37.2
|
1.0
|
|
C
|
R:HIS161
|
4.8
|
35.5
|
1.0
|
|
OG
|
R:SER163
|
4.9
|
32.9
|
1.0
|
|
Reference:
L.S.Huang,
D.Cobessi,
E.Y.Tung,
E.A.Berry.
Binding of the Respiratory Chain Inhibitor Antimycin to the Mitochondrial Bc(1) Complex: A New Crystal Structure Reveals An Altered Intramolecular Hydrogen-Bonding Pattern. J.Mol.Biol. V. 351 573 2005.
ISSN: ISSN 0022-2836
PubMed: 16024040
DOI: 10.1016/J.JMB.2005.05.053
Page generated: Sun Dec 13 14:28:43 2020
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