Atomistry » Iron » PDB 1qov-1ra5 » 1r7s
Atomistry »
  Iron »
    PDB 1qov-1ra5 »
      1r7s »

Iron in PDB 1r7s: Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant

Protein crystallography data

The structure of Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant, PDB code: 1r7s was solved by N.Smith, M.Mayhew, H.Kelly, H.Robinson, A.Heroux, M.J.Holden, D.T.Gallagher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.91
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 145.076, 78.218, 55.739, 90.00, 111.33, 90.00
R / Rfree (%) 18.8 / 21.1

Iron Binding Sites:

The binding sites of Iron atom in the Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant (pdb code 1r7s). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant, PDB code: 1r7s:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 1r7s

Go back to Iron Binding Sites List in 1r7s
Iron binding site 1 out of 6 in the Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe117

b:19.2
occ:1.00
 FE1 A:FES117 0.0 19.2 1.0
S1 A:FES117 2.2 19.6 1.0
S2 A:FES117 2.3 17.7 1.0
SG A:CYS39 2.4 15.3 1.0
SG A:CYS45 2.4 17.1 1.0
FE2 A:FES117 2.7 18.9 1.0
CB A:CYS39 3.4 15.6 1.0
CB A:CYS45 3.6 17.8 1.0
N A:CYS45 3.6 16.9 1.0
N A:CYS39 3.8 15.5 1.0
CA A:CYS45 4.0 18.7 1.0
CA A:CYS39 4.1 15.3 1.0
N A:SER44 4.1 17.5 1.0
N A:GLY41 4.1 15.6 1.0
N A:ALA46 4.2 18.5 1.0
N A:ALA43 4.4 16.7 1.0
SG A:CYS86 4.4 15.1 1.0
N A:GLY40 4.5 15.9 1.0
C A:CYS39 4.5 16.6 1.0
C A:CYS45 4.5 20.8 1.0
C A:SER44 4.5 17.1 1.0
CA A:GLY41 4.6 14.4 1.0
SG A:CYS48 4.6 15.9 1.0
N A:THR47 4.7 15.8 1.0
CA A:ALA43 4.7 17.2 1.0
N A:ASP38 4.7 15.2 1.0
C A:GLY37 4.7 16.4 1.0
N A:SER42 4.7 15.2 1.0
OG1 A:THR47 4.8 14.6 1.0
CA A:GLY37 4.8 15.0 1.0
CA A:SER44 4.8 17.6 1.0
C A:ALA43 4.9 18.6 1.0
C A:ASP38 5.0 14.3 1.0

Iron binding site 2 out of 6 in 1r7s

Go back to Iron Binding Sites List in 1r7s
Iron binding site 2 out of 6 in the Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe117

b:18.9
occ:1.00
 FE2 A:FES117 0.0 18.9 1.0
S2 A:FES117 2.2 17.7 1.0
S1 A:FES117 2.2 19.6 1.0
SG A:CYS48 2.3 15.9 1.0
SG A:CYS86 2.3 15.1 1.0
FE1 A:FES117 2.7 19.2 1.0
CB A:CYS86 3.3 15.2 1.0
CB A:CYS48 3.4 16.0 1.0
N A:CYS86 4.2 15.7 1.0
CA A:CYS86 4.3 15.4 1.0
CB A:LEU84 4.4 15.9 1.0
CA A:GLY41 4.4 14.4 1.0
N A:CYS48 4.4 14.8 1.0
SG A:CYS45 4.5 17.1 1.0
SG A:CYS39 4.5 15.3 1.0
CA A:CYS48 4.5 14.4 1.0
N A:ALA43 4.6 16.7 1.0
N A:GLY41 4.7 15.6 1.0
CA A:ALA43 4.7 17.2 1.0
C A:GLY41 4.9 15.7 1.0

Iron binding site 3 out of 6 in 1r7s

Go back to Iron Binding Sites List in 1r7s
Iron binding site 3 out of 6 in the Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe127

b:19.1
occ:1.00
 FE1 B:FES127 0.0 19.1 1.0
S2 B:FES127 2.2 18.1 1.0
S1 B:FES127 2.2 19.0 1.0
SG B:CYS45 2.3 18.2 1.0
SG B:CYS39 2.3 18.6 1.0
FE2 B:FES127 2.7 18.8 1.0
CB B:CYS39 3.4 17.2 1.0
CB B:CYS45 3.6 19.4 1.0
N B:CYS45 3.6 17.8 1.0
N B:CYS39 3.7 16.0 1.0
CA B:CYS45 4.0 18.5 1.0
CA B:CYS39 4.0 17.7 1.0
N B:SER44 4.1 18.6 1.0
N B:GLY41 4.2 20.4 1.0
N B:ALA46 4.2 19.4 1.0
N B:ALA43 4.4 24.7 1.0
SG B:CYS86 4.5 17.4 1.0
N B:GLY40 4.5 18.2 1.0
C B:CYS45 4.5 19.3 1.0
C B:CYS39 4.5 18.8 1.0
C B:SER44 4.5 19.8 1.0
CA B:GLY41 4.6 22.5 1.0
N B:SER42 4.6 23.7 1.0
SG B:CYS48 4.6 16.0 1.0
OG1 B:THR47 4.6 22.0 1.0
C B:GLY37 4.7 16.8 1.0
CA B:ALA43 4.7 22.1 1.0
N B:ASP38 4.7 15.0 1.0
N B:THR47 4.7 17.1 1.0
CA B:GLY37 4.8 16.1 1.0
CA B:SER44 4.9 20.2 1.0
C B:ASP38 4.9 17.6 1.0
C B:ALA43 4.9 22.1 1.0
O B:GLY37 5.0 18.2 1.0

Iron binding site 4 out of 6 in 1r7s

Go back to Iron Binding Sites List in 1r7s
Iron binding site 4 out of 6 in the Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe127

b:18.8
occ:1.00
 FE2 B:FES127 0.0 18.8 1.0
S1 B:FES127 2.2 19.0 1.0
S2 B:FES127 2.2 18.1 1.0
SG B:CYS48 2.3 16.0 1.0
SG B:CYS86 2.3 17.4 1.0
FE1 B:FES127 2.7 19.1 1.0
CB B:CYS86 3.3 17.0 1.0
CB B:CYS48 3.4 13.2 1.0
N B:CYS86 4.2 15.2 1.0
CA B:GLY41 4.3 22.5 1.0
CA B:CYS86 4.3 16.6 1.0
CB B:LEU84 4.4 15.7 1.0
N B:CYS48 4.4 12.8 1.0
SG B:CYS45 4.5 18.2 1.0
CA B:CYS48 4.5 13.1 1.0
SG B:CYS39 4.5 18.6 1.0
N B:ALA43 4.6 24.7 1.0
N B:GLY41 4.7 20.4 1.0
CA B:ALA43 4.7 22.1 1.0
CD1 B:LEU84 4.9 17.2 1.0
C B:GLY41 4.9 23.6 1.0

Iron binding site 5 out of 6 in 1r7s

Go back to Iron Binding Sites List in 1r7s
Iron binding site 5 out of 6 in the Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe137

b:23.0
occ:1.00
 FE1 C:FES137 0.0 23.0 1.0
S2 C:FES137 2.2 20.0 1.0
S1 C:FES137 2.3 20.9 1.0
SG C:CYS45 2.3 20.7 1.0
SG C:CYS39 2.3 22.6 1.0
FE2 C:FES137 2.7 22.8 1.0
CB C:CYS39 3.5 19.6 1.0
N C:CYS45 3.5 19.9 1.0
CB C:CYS45 3.6 21.2 1.0
N C:CYS39 3.8 20.2 1.0
CA C:CYS45 4.0 21.3 1.0
N C:SER44 4.1 25.1 1.0
CA C:CYS39 4.1 20.8 1.0
N C:ALA46 4.1 21.6 1.0
N C:GLY41 4.2 19.2 1.0
SG C:CYS86 4.4 20.8 1.0
C C:SER44 4.4 22.7 1.0
C C:CYS45 4.4 22.0 1.0
N C:ALA43 4.5 23.8 1.0
CA C:GLY41 4.5 21.5 1.0
C C:CYS39 4.5 21.1 1.0
N C:GLY40 4.6 20.5 1.0
N C:SER42 4.6 25.2 1.0
C C:GLY37 4.7 18.4 1.0
SG C:CYS48 4.7 18.9 1.0
N C:THR47 4.7 18.7 1.0
N C:ASP38 4.7 18.5 1.0
OG1 C:THR47 4.7 19.7 1.0
CA C:ALA43 4.7 24.1 1.0
CA C:GLY37 4.8 18.0 1.0
CA C:SER44 4.8 22.7 1.0
C C:ALA43 4.9 25.5 1.0
O C:GLY37 4.9 19.7 1.0
C C:ASP38 5.0 21.0 1.0

Iron binding site 6 out of 6 in 1r7s

Go back to Iron Binding Sites List in 1r7s
Iron binding site 6 out of 6 in the Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Putidaredoxin (FE2S2 Ferredoxin), C73G Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe137

b:22.8
occ:1.00
 FE2 C:FES137 0.0 22.8 1.0
S2 C:FES137 2.2 20.0 1.0
S1 C:FES137 2.2 20.9 1.0
SG C:CYS86 2.3 20.8 1.0
SG C:CYS48 2.4 18.9 1.0
FE1 C:FES137 2.7 23.0 1.0
CB C:CYS86 3.2 17.9 1.0
CB C:CYS48 3.4 15.9 1.0
N C:CYS86 4.2 16.8 1.0
CA C:CYS86 4.3 17.1 1.0
CA C:GLY41 4.3 21.5 1.0
CB C:LEU84 4.4 17.7 1.0
SG C:CYS45 4.5 20.7 1.0
N C:CYS48 4.5 14.7 1.0
SG C:CYS39 4.5 22.6 1.0
CA C:CYS48 4.6 15.4 1.0
N C:ALA43 4.6 23.8 1.0
CA C:ALA43 4.7 24.1 1.0
N C:GLY41 4.7 19.2 1.0
CD1 C:LEU84 4.8 19.6 1.0
CG C:MET24 4.9 18.6 1.0
C C:GLY41 4.9 22.5 1.0
CD2 C:LEU84 5.0 20.1 1.0

Reference:

N.Smith, M.Mayhew, M.J.Holden, H.Kelly, H.Robinson, A.Heroux, V.L.Vilker, D.T.Gallagher. Structure of C73G Putidaredoxin From Pseudomonas Putida. Acta Crystallogr.,Sect.D V. 60 816 2004.
ISSN: ISSN 0907-4449
PubMed: 15103126
DOI: 10.1107/S0907444904003348
Page generated: Sat Aug 3 14:00:07 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy