Iron in PDB 1rdg: Rubredoxin From Desulfovibrio Gigas. A Molecular Model of the Oxidized Form at 1.4 Angstroms Resolution

The structure of Rubredoxin From Desulfovibrio Gigas. A Molecular Model of the Oxidized Form at 1.4 Angstroms Resolution, PDB code: 1rdg was solved by M.Frey, L.C.Sieker, F.Payan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 1.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	19.731, 41.670, 24.394, 90.00, 109.40, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Iron atom in the Rubredoxin From Desulfovibrio Gigas. A Molecular Model of the Oxidized Form at 1.4 Angstroms Resolution (pdb code 1rdg). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Rubredoxin From Desulfovibrio Gigas. A Molecular Model of the Oxidized Form at 1.4 Angstroms Resolution, PDB code: 1rdg:

Iron binding site 1 out of 1 in the Rubredoxin From Desulfovibrio Gigas. A Molecular Model of the Oxidized Form at 1.4 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Rubredoxin From Desulfovibrio Gigas. A Molecular Model of the Oxidized Form at 1.4 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe53 b:6.8 occ:1.00 SG A:CYS39 2.3 6.2 1.0 SG A:CYS42 2.3 6.5 1.0 SG A:CYS9 2.3 7.2 1.0 SG A:CYS6 2.3 5.6 1.0 CB A:CYS39 3.1 5.5 1.0 CB A:CYS6 3.2 5.7 1.0 CB A:CYS42 3.3 6.7 1.0 CB A:CYS9 3.4 4.9 1.0 N A:CYS9 3.8 5.1 1.0 N A:CYS42 3.9 7.3 1.0 CA A:CYS9 4.1 6.3 1.0 CA A:CYS42 4.1 6.2 1.0 CB A:TYR11 4.3 8.6 1.0 CA A:CYS39 4.6 6.4 1.0 CB A:VAL8 4.6 5.8 1.0 CA A:CYS6 4.7 5.2 1.0 C A:CYS9 4.7 5.5 1.0 CB A:ALA44 4.7 8.7 1.0 N A:TYR11 4.7 7.0 1.0 C A:CYS42 4.8 6.4 1.0 C A:VAL8 4.8 6.7 1.0 N A:GLY10 4.8 5.3 1.0 CB A:VAL41 4.8 7.9 1.0 C A:VAL41 4.8 8.2 1.0 N A:GLY43 4.9 6.8 1.0 N A:ALA44 4.9 6.8 1.0 CZ A:PHE49 5.0 6.2 1.0

M.Frey, L.Sieker, F.Payan, R.Haser, M.Bruschi, G.Pepe, J.Legall. Rubredoxin From Desulfovibrio Gigas. A Molecular Model of the Oxidized Form at 1.4 A Resolution. J.Mol.Biol. V. 197 525 1987.
ISSN: ISSN 0022-2836
PubMed: 3441010
DOI: 10.1016/0022-2836(87)90562-6