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Iron in PDB 1rf9: Crystal Structure of Cytochrome P450-Cam with A Fluorescent Probe D-4- Ad (Adamantane-1-Carboxylic Acid-5-Dimethylamino-Naphthalene-1- Sulfonylamino-Butyl-Amide)

Enzymatic activity of Crystal Structure of Cytochrome P450-Cam with A Fluorescent Probe D-4- Ad (Adamantane-1-Carboxylic Acid-5-Dimethylamino-Naphthalene-1- Sulfonylamino-Butyl-Amide)

All present enzymatic activity of Crystal Structure of Cytochrome P450-Cam with A Fluorescent Probe D-4- Ad (Adamantane-1-Carboxylic Acid-5-Dimethylamino-Naphthalene-1- Sulfonylamino-Butyl-Amide):
1.14.15.1;

Protein crystallography data

The structure of Crystal Structure of Cytochrome P450-Cam with A Fluorescent Probe D-4- Ad (Adamantane-1-Carboxylic Acid-5-Dimethylamino-Naphthalene-1- Sulfonylamino-Butyl-Amide), PDB code: 1rf9 was solved by A.-M.A.Hays, A.R.Dunn, H.B.Gray, C.D.Stout, D.B.Goodin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.126, 75.112, 93.165, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 22.7

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Cytochrome P450-Cam with A Fluorescent Probe D-4- Ad (Adamantane-1-Carboxylic Acid-5-Dimethylamino-Naphthalene-1- Sulfonylamino-Butyl-Amide) (pdb code 1rf9). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Cytochrome P450-Cam with A Fluorescent Probe D-4- Ad (Adamantane-1-Carboxylic Acid-5-Dimethylamino-Naphthalene-1- Sulfonylamino-Butyl-Amide), PDB code: 1rf9:

Iron binding site 1 out of 1 in 1rf9

Go back to Iron Binding Sites List in 1rf9
Iron binding site 1 out of 1 in the Crystal Structure of Cytochrome P450-Cam with A Fluorescent Probe D-4- Ad (Adamantane-1-Carboxylic Acid-5-Dimethylamino-Naphthalene-1- Sulfonylamino-Butyl-Amide)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome P450-Cam with A Fluorescent Probe D-4- Ad (Adamantane-1-Carboxylic Acid-5-Dimethylamino-Naphthalene-1- Sulfonylamino-Butyl-Amide) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe417

b:10.6
occ:1.00
 FE A:HEM417 0.0 10.6 1.0
NC A:HEM417 2.0 9.7 1.0
NB A:HEM417 2.1 9.0 1.0
ND A:HEM417 2.1 11.2 1.0
NA A:HEM417 2.1 10.0 1.0
SG A:CYS357 2.3 12.0 1.0
O A:HOH4170 2.5 28.8 1.0
C1D A:HEM417 3.0 13.2 1.0
C1C A:HEM417 3.0 8.7 1.0
C4B A:HEM417 3.0 7.8 1.0
C1B A:HEM417 3.0 8.9 1.0
C4C A:HEM417 3.0 11.7 1.0
C4A A:HEM417 3.0 9.3 1.0
C4D A:HEM417 3.1 12.0 1.0
C1A A:HEM417 3.1 9.7 1.0
CHC A:HEM417 3.3 9.0 1.0
CHD A:HEM417 3.3 12.7 1.0
CHB A:HEM417 3.3 8.6 1.0
CHA A:HEM417 3.4 7.6 1.0
CB A:CYS357 3.4 11.4 1.0
CA A:CYS357 4.1 11.3 1.0
O A:GLY248 4.2 15.6 1.0
C2C A:HEM417 4.2 11.7 1.0
C2D A:HEM417 4.2 13.2 1.0
C3C A:HEM417 4.3 11.6 1.0
C3D A:HEM417 4.3 11.9 1.0
C3A A:HEM417 4.3 9.5 1.0
C3B A:HEM417 4.3 7.9 1.0
C2B A:HEM417 4.3 8.1 1.0
C2A A:HEM417 4.3 8.9 1.0
C6 A:DBR900 4.4 24.9 1.0
N A:GLY359 4.6 12.2 1.0
N A:LEU358 4.8 12.2 1.0
C A:CYS357 4.8 12.2 1.0
C8 A:DBR900 4.9 24.5 1.0
C A:GLY248 4.9 16.8 1.0

Reference:

A.-M.A.Hays, A.R.Dunn, R.Chiu, H.B.Gray, C.D.Stout, D.B.Goodin. Conformational States of Cytochrome P450CAM Revealed By Trapping of Synthetic Molecular Wires J.Mol.Biol. V. 344 455 2004.
ISSN: ISSN 0022-2836
PubMed: 15522298
DOI: 10.1016/J.JMB.2004.09.046
Page generated: Sat Aug 3 14:14:42 2024

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