Atomistry » Iron » PDB 1rak-1rsv » 1rrl
Atomistry »
  Iron »
    PDB 1rak-1rsv »
      1rrl »

Iron in PDB 1rrl: Soybean Lipoxygenase (Lox-3) at 93K at 2.0 A Resolution

Enzymatic activity of Soybean Lipoxygenase (Lox-3) at 93K at 2.0 A Resolution

All present enzymatic activity of Soybean Lipoxygenase (Lox-3) at 93K at 2.0 A Resolution:
1.13.11.12;

Protein crystallography data

The structure of Soybean Lipoxygenase (Lox-3) at 93K at 2.0 A Resolution, PDB code: 1rrl was solved by O.Y.Borbulevych, J.Jankun, E.Skrzypczak-Jankun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.09
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 106.400, 133.500, 60.700, 90.00, 97.30, 90.00
R / Rfree (%) 20.7 / 30.5

Iron Binding Sites:

The binding sites of Iron atom in the Soybean Lipoxygenase (Lox-3) at 93K at 2.0 A Resolution (pdb code 1rrl). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Soybean Lipoxygenase (Lox-3) at 93K at 2.0 A Resolution, PDB code: 1rrl:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1rrl

Go back to Iron Binding Sites List in 1rrl
Iron binding site 1 out of 2 in the Soybean Lipoxygenase (Lox-3) at 93K at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Soybean Lipoxygenase (Lox-3) at 93K at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe858

b:28.9
occ:1.00
NE2 A:HIS523 2.1 20.2 1.0
OXT A:ILE857 2.1 21.1 1.0
NE2 A:HIS709 2.2 20.2 1.0
NE2 A:HIS518 2.2 23.5 1.0
O A:HOH960 2.3 24.9 1.0
O A:ILE857 2.8 21.6 1.0
C A:ILE857 2.9 19.6 1.0
CD2 A:HIS523 3.0 21.1 1.0
CE1 A:HIS518 3.0 25.3 1.0
CD2 A:HIS709 3.1 15.9 1.0
CE1 A:HIS709 3.1 13.1 1.0
CE1 A:HIS523 3.2 23.5 1.0
CD2 A:HIS518 3.3 27.6 1.0
OD1 A:ASN713 3.4 17.3 1.0
CG A:ASN713 4.1 16.6 1.0
CG A:HIS523 4.2 20.1 1.0
ND1 A:HIS518 4.2 27.9 1.0
ND1 A:HIS709 4.2 15.7 1.0
ND1 A:HIS523 4.3 18.6 1.0
CG A:HIS709 4.3 19.2 1.0
CG A:HIS518 4.3 27.2 1.0
CA A:ILE857 4.4 19.0 1.0
CB A:ASN713 4.5 17.3 1.0
CG2 A:ILE855 4.7 16.1 1.0
N A:ILE857 4.8 18.3 1.0
ND2 A:ASN713 4.9 19.3 1.0
CG2 A:ILE857 5.0 15.8 1.0

Iron binding site 2 out of 2 in 1rrl

Go back to Iron Binding Sites List in 1rrl
Iron binding site 2 out of 2 in the Soybean Lipoxygenase (Lox-3) at 93K at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Soybean Lipoxygenase (Lox-3) at 93K at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe858

b:31.0
occ:1.00
NE2 B:HIS523 2.1 26.0 1.0
OXT B:ILE857 2.1 23.1 1.0
NE2 B:HIS709 2.2 20.3 1.0
NE2 B:HIS518 2.2 30.3 1.0
CE1 B:HIS518 3.0 32.5 1.0
CD2 B:HIS709 3.0 13.5 1.0
CE1 B:HIS523 3.0 25.5 1.0
CD2 B:HIS523 3.1 25.0 1.0
C B:ILE857 3.1 20.4 1.0
CE1 B:HIS709 3.3 2.5 1.0
CD2 B:HIS518 3.3 27.5 1.0
O B:ILE857 3.3 22.2 1.0
OD1 B:ASN713 3.7 28.5 1.0
CG B:ASN713 3.9 19.0 1.0
ND1 B:HIS523 4.1 26.0 1.0
ND1 B:HIS518 4.2 28.8 1.0
CG B:HIS523 4.2 23.1 1.0
CG B:HIS709 4.2 16.0 1.0
ND2 B:ASN713 4.3 13.9 1.0
ND1 B:HIS709 4.3 5.2 1.0
CB B:ASN713 4.3 18.7 1.0
CG B:HIS518 4.4 26.4 1.0
CG2 B:ILE855 4.5 17.1 1.0
CA B:ILE857 4.5 18.9 1.0
N B:ILE857 4.8 18.6 1.0

Reference:

E.Skrzypczak-Jankun, O.Y.Borbulevych, M.I.Zavodszky, M.R.Baranski, K.Padmanabhan, V.Petricek, J.Jankun. Effect of Crystal Freezing and Small-Molecule Binding on Internal Cavity Size in A Large Protein: X-Ray and Docking Studies of Lipoxygenase at Ambient and Low Temperature at 2.0 A Resolution. Acta Crystallogr.,Sect.D V. 62 766 2006.
ISSN: ISSN 0907-4449
PubMed: 16790932
DOI: 10.1107/S0907444906016982
Page generated: Sat Aug 3 14:20:44 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy