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Iron in PDB 1rte: X-Ray Structure of Cyanide Derivative of Truncated Hemoglobin N (Trhbn) From Mycobacterium Tuberculosis

Protein crystallography data

The structure of X-Ray Structure of Cyanide Derivative of Truncated Hemoglobin N (Trhbn) From Mycobacterium Tuberculosis, PDB code: 1rte was solved by M.Milani, M.Guertin, A.Boffi, G.Antonini, A.Bocedi, M.Mattu, M.Bolognesi, P.Ascenzi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.30 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.567, 61.443, 91.294, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 23.7

Iron Binding Sites:

The binding sites of Iron atom in the X-Ray Structure of Cyanide Derivative of Truncated Hemoglobin N (Trhbn) From Mycobacterium Tuberculosis (pdb code 1rte). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the X-Ray Structure of Cyanide Derivative of Truncated Hemoglobin N (Trhbn) From Mycobacterium Tuberculosis, PDB code: 1rte:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1rte

Go back to Iron Binding Sites List in 1rte
Iron binding site 1 out of 2 in the X-Ray Structure of Cyanide Derivative of Truncated Hemoglobin N (Trhbn) From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Structure of Cyanide Derivative of Truncated Hemoglobin N (Trhbn) From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe144

b:15.8
occ:1.00
FE A:HEM144 0.0 15.8 1.0
C A:CYN445 1.8 19.4 1.0
NB A:HEM144 2.0 15.4 1.0
NA A:HEM144 2.0 17.0 1.0
ND A:HEM144 2.0 17.5 1.0
NC A:HEM144 2.0 14.3 1.0
NE2 A:HIS81 2.1 15.3 1.0
C4D A:HEM144 3.0 18.4 1.0
N A:CYN445 3.0 19.6 1.0
C1A A:HEM144 3.0 17.7 1.0
C4B A:HEM144 3.0 17.3 1.0
C1B A:HEM144 3.0 17.5 1.0
C1D A:HEM144 3.0 15.9 1.0
C1C A:HEM144 3.0 15.6 1.0
C4C A:HEM144 3.1 15.2 1.0
C4A A:HEM144 3.1 17.1 1.0
CE1 A:HIS81 3.1 15.1 1.0
CD2 A:HIS81 3.1 16.0 1.0
CHA A:HEM144 3.4 17.8 1.0
CHC A:HEM144 3.4 16.0 1.0
CHD A:HEM144 3.4 17.0 1.0
CHB A:HEM144 3.4 15.8 1.0
ND1 A:HIS81 4.2 14.8 1.0
C3B A:HEM144 4.2 18.1 1.0
CG A:HIS81 4.2 15.5 1.0
C2B A:HEM144 4.2 16.8 1.0
C2A A:HEM144 4.3 16.9 1.0
C3D A:HEM144 4.3 20.8 1.0
C2C A:HEM144 4.3 14.6 1.0
C2D A:HEM144 4.3 19.5 1.0
C3A A:HEM144 4.3 18.8 1.0
C3C A:HEM144 4.3 17.2 1.0
NE2 A:GLN58 4.8 19.0 1.0

Iron binding site 2 out of 2 in 1rte

Go back to Iron Binding Sites List in 1rte
Iron binding site 2 out of 2 in the X-Ray Structure of Cyanide Derivative of Truncated Hemoglobin N (Trhbn) From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of X-Ray Structure of Cyanide Derivative of Truncated Hemoglobin N (Trhbn) From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe144

b:16.4
occ:1.00
FE B:HEM144 0.0 16.4 1.0
C B:CYN446 1.7 19.9 1.0
NE2 B:HIS81 2.0 18.4 1.0
NB B:HEM144 2.0 14.7 1.0
NC B:HEM144 2.0 15.1 1.0
NA B:HEM144 2.0 13.1 1.0
ND B:HEM144 2.0 16.4 1.0
N B:CYN446 2.9 19.6 1.0
CE1 B:HIS81 3.0 19.5 1.0
CD2 B:HIS81 3.0 19.2 1.0
C1D B:HEM144 3.0 16.3 1.0
C1B B:HEM144 3.0 15.4 1.0
C4C B:HEM144 3.0 16.2 1.0
C4B B:HEM144 3.0 17.7 1.0
C4D B:HEM144 3.1 18.3 1.0
C4A B:HEM144 3.1 15.8 1.0
C1C B:HEM144 3.1 17.0 1.0
C1A B:HEM144 3.1 17.7 1.0
CHD B:HEM144 3.3 16.8 1.0
CHB B:HEM144 3.4 15.8 1.0
CHC B:HEM144 3.5 15.7 1.0
CHA B:HEM144 3.5 15.5 0.0
ND1 B:HIS81 4.1 19.7 1.0
CG B:HIS81 4.1 18.1 1.0
C2B B:HEM144 4.2 16.6 1.0
C2D B:HEM144 4.2 18.1 1.0
C3B B:HEM144 4.3 17.1 1.0
C3C B:HEM144 4.3 19.4 1.0
C3D B:HEM144 4.3 19.4 1.0
C2C B:HEM144 4.3 17.0 1.0
C3A B:HEM144 4.3 18.0 1.0
C2A B:HEM144 4.3 17.1 1.0
NE2 B:GLN58 4.8 16.3 1.0

Reference:

M.Milani, Y.Ouellet, H.Ouellet, M.Guertin, A.Boffi, G.Antonini, A.Bocedi, M.Mattu, M.Bolognesi, P.Ascenzi. Cyanide Binding to Truncated Hemoglobins: A Crystallographic and Kinetic Study Biochemistry V. 43 5213 2004.
ISSN: ISSN 0006-2960
PubMed: 15122887
DOI: 10.1021/BI049870+
Page generated: Sun Dec 13 14:30:55 2020

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