Atomistry » Iron » PDB 1rte-1sdk » 1rz6
Atomistry »
  Iron »
    PDB 1rte-1sdk »
      1rz6 »

Iron in PDB 1rz6: Di-Haem Cytochrome C Peroxidase, Form in

Enzymatic activity of Di-Haem Cytochrome C Peroxidase, Form in

All present enzymatic activity of Di-Haem Cytochrome C Peroxidase, Form in:
1.11.1.5;

Protein crystallography data

The structure of Di-Haem Cytochrome C Peroxidase, Form in, PDB code: 1rz6 was solved by J.M.Dias, T.Alves, C.Bonifacio, A.Pereira, D.Bourgeois, I.Moura, M.J.Romao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.20
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.283, 114.283, 90.493, 90.00, 90.00, 120.00
R / Rfree (%) 17.9 / 20.9

Iron Binding Sites:

The binding sites of Iron atom in the Di-Haem Cytochrome C Peroxidase, Form in (pdb code 1rz6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Di-Haem Cytochrome C Peroxidase, Form in, PDB code: 1rz6:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1rz6

Go back to Iron Binding Sites List in 1rz6
Iron binding site 1 out of 2 in the Di-Haem Cytochrome C Peroxidase, Form in


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Di-Haem Cytochrome C Peroxidase, Form in within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:31.6
occ:1.00
FE A:HEM401 0.0 31.6 1.0
ND A:HEM401 2.0 30.8 1.0
NE2 A:HIS55 2.0 30.5 1.0
NC A:HEM401 2.0 30.9 1.0
NB A:HEM401 2.0 28.5 1.0
NA A:HEM401 2.0 30.6 1.0
NE2 A:HIS71 2.2 37.3 1.0
CE1 A:HIS55 3.0 30.8 1.0
C4D A:HEM401 3.0 31.2 1.0
CD2 A:HIS55 3.0 30.5 1.0
C1C A:HEM401 3.0 29.3 1.0
C1A A:HEM401 3.0 30.1 1.0
C4C A:HEM401 3.0 31.0 1.0
C4A A:HEM401 3.0 29.4 1.0
C1B A:HEM401 3.1 27.1 1.0
C1D A:HEM401 3.1 32.7 1.0
C4B A:HEM401 3.1 28.4 1.0
CE1 A:HIS71 3.1 36.8 1.0
CD2 A:HIS71 3.3 37.8 1.0
CHA A:HEM401 3.3 29.9 1.0
CHD A:HEM401 3.4 29.7 1.0
CHB A:HEM401 3.4 27.9 1.0
CHC A:HEM401 3.4 29.7 1.0
ND1 A:HIS55 4.1 30.5 1.0
CG A:HIS55 4.1 32.1 1.0
C3D A:HEM401 4.2 31.1 1.0
C2A A:HEM401 4.2 30.7 1.0
C2C A:HEM401 4.2 30.7 1.0
ND1 A:HIS71 4.3 37.1 1.0
C3C A:HEM401 4.3 30.3 1.0
C3A A:HEM401 4.3 28.6 1.0
C3B A:HEM401 4.3 27.4 1.0
C2D A:HEM401 4.3 30.3 1.0
C2B A:HEM401 4.3 27.0 1.0
CG A:HIS71 4.4 40.9 1.0

Iron binding site 2 out of 2 in 1rz6

Go back to Iron Binding Sites List in 1rz6
Iron binding site 2 out of 2 in the Di-Haem Cytochrome C Peroxidase, Form in


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Di-Haem Cytochrome C Peroxidase, Form in within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:33.2
occ:1.00
FE A:HEM402 0.0 33.2 1.0
ND A:HEM402 2.0 34.2 1.0
NE2 A:HIS201 2.0 31.8 1.0
NB A:HEM402 2.0 35.9 1.0
NC A:HEM402 2.0 36.5 1.0
NA A:HEM402 2.0 34.5 1.0
SD A:MET275 2.3 38.1 1.0
CE1 A:HIS201 3.0 31.2 1.0
C1B A:HEM402 3.0 37.4 1.0
CD2 A:HIS201 3.0 34.5 1.0
C4D A:HEM402 3.0 34.8 1.0
C1C A:HEM402 3.1 35.9 1.0
C1D A:HEM402 3.1 34.7 1.0
C4C A:HEM402 3.1 35.2 1.0
C4A A:HEM402 3.1 34.2 1.0
C1A A:HEM402 3.1 34.9 1.0
C4B A:HEM402 3.1 38.0 1.0
CHD A:HEM402 3.4 34.2 1.0
CHB A:HEM402 3.4 34.6 1.0
CHA A:HEM402 3.4 35.2 1.0
CHC A:HEM402 3.4 35.8 1.0
CG A:MET275 3.4 38.3 1.0
CE A:MET275 3.5 38.0 1.0
ND1 A:HIS201 4.1 32.3 1.0
CB A:MET275 4.1 37.6 1.0
CG A:HIS201 4.2 32.1 1.0
C3D A:HEM402 4.3 32.3 1.0
C2B A:HEM402 4.3 38.4 1.0
C2D A:HEM402 4.3 33.6 1.0
C2A A:HEM402 4.3 35.1 1.0
C3A A:HEM402 4.3 36.1 1.0
C3B A:HEM402 4.3 38.9 1.0
C2C A:HEM402 4.3 35.3 1.0
C3C A:HEM402 4.3 35.6 1.0

Reference:

J.M.Dias, T.Alves, C.Bonifacio, A.S.Pereira, J.Trincao, D.Bourgeois, I.Moura, M.J.Romao. Structural Basis For the Mechanism of Ca(2+) Activation of the Di-Heme Cytochrome C Peroxidase From Pseudomonas Nautica 617. Structure V. 12 961 2004.
ISSN: ISSN 0969-2126
PubMed: 15274917
DOI: 10.1016/J.STR.2004.03.025
Page generated: Sat Aug 3 14:31:19 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy