Atomistry » Iron » PDB 1rte-1sdk » 1rzz
Atomistry »
  Iron »
    PDB 1rte-1sdk »
      1rzz »

Iron in PDB 1rzz: Photosynthetic Reaction Center Double Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn and Arg M233 Replaced with Cys in the Charge-Neutral Dqaqb State (Tetragonal Form)

Protein crystallography data

The structure of Photosynthetic Reaction Center Double Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn and Arg M233 Replaced with Cys in the Charge-Neutral Dqaqb State (Tetragonal Form), PDB code: 1rzz was solved by Q.Xu, H.L.Axelrod, E.C.Abresch, M.L.Paddock, M.Y.Okamura, G.Feher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.76 / 2.40
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 139.582, 139.582, 274.731, 90.00, 90.00, 90.00
R / Rfree (%) 21.6 / 23.8

Other elements in 1rzz:

The structure of Photosynthetic Reaction Center Double Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn and Arg M233 Replaced with Cys in the Charge-Neutral Dqaqb State (Tetragonal Form) also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Photosynthetic Reaction Center Double Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn and Arg M233 Replaced with Cys in the Charge-Neutral Dqaqb State (Tetragonal Form) (pdb code 1rzz). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Photosynthetic Reaction Center Double Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn and Arg M233 Replaced with Cys in the Charge-Neutral Dqaqb State (Tetragonal Form), PDB code: 1rzz:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1rzz

Go back to Iron Binding Sites List in 1rzz
Iron binding site 1 out of 2 in the Photosynthetic Reaction Center Double Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn and Arg M233 Replaced with Cys in the Charge-Neutral Dqaqb State (Tetragonal Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Photosynthetic Reaction Center Double Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn and Arg M233 Replaced with Cys in the Charge-Neutral Dqaqb State (Tetragonal Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Fe1007

b:20.4
occ:1.00
NE2 M:HIS219 2.1 24.2 1.0
NE2 M:HIS266 2.1 16.2 1.0
NE2 L:HIS190 2.1 21.6 1.0
NE2 L:HIS230 2.2 16.1 1.0
OE2 M:GLU234 2.2 25.7 1.0
OE1 M:GLU234 2.3 22.8 1.0
CD M:GLU234 2.6 25.3 1.0
CE1 L:HIS230 3.0 17.5 1.0
CE1 L:HIS190 3.0 20.3 1.0
CE1 M:HIS266 3.1 19.2 1.0
CE1 M:HIS219 3.1 24.6 1.0
CD2 M:HIS219 3.2 23.0 1.0
CD2 M:HIS266 3.2 21.1 1.0
CD2 L:HIS190 3.2 19.5 1.0
CD2 L:HIS230 3.3 16.6 1.0
CG M:GLU234 4.1 22.4 1.0
ND1 L:HIS190 4.2 21.2 1.0
ND1 L:HIS230 4.2 14.4 1.0
ND1 M:HIS266 4.3 17.1 1.0
ND1 M:HIS219 4.3 23.5 1.0
CG M:HIS219 4.3 24.5 1.0
CG M:HIS266 4.3 20.9 1.0
CG L:HIS190 4.3 20.3 1.0
CG L:HIS230 4.4 16.1 1.0
CG1 M:ILE223 4.4 24.2 1.0
CG2 L:VAL194 4.7 15.2 1.0
CD1 M:ILE223 4.8 21.4 1.0
O M:HOH1042 4.8 27.1 1.0
CB M:GLU234 5.0 25.4 1.0

Iron binding site 2 out of 2 in 1rzz

Go back to Iron Binding Sites List in 1rzz
Iron binding site 2 out of 2 in the Photosynthetic Reaction Center Double Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn and Arg M233 Replaced with Cys in the Charge-Neutral Dqaqb State (Tetragonal Form)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Photosynthetic Reaction Center Double Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn and Arg M233 Replaced with Cys in the Charge-Neutral Dqaqb State (Tetragonal Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Fe2007

b:30.5
occ:1.00
NE2 S:HIS219 2.1 32.4 1.0
OE2 S:GLU234 2.1 35.5 1.0
NE2 R:HIS190 2.2 29.0 1.0
NE2 R:HIS230 2.2 29.9 1.0
NE2 S:HIS266 2.2 27.7 1.0
OE1 S:GLU234 2.3 32.3 1.0
CD S:GLU234 2.5 35.1 1.0
CE1 S:HIS219 3.0 32.2 1.0
CE1 R:HIS190 3.1 29.8 1.0
CE1 S:HIS266 3.1 28.2 1.0
CE1 R:HIS230 3.1 30.0 1.0
CD2 S:HIS219 3.2 31.3 1.0
CD2 R:HIS230 3.3 28.4 1.0
CD2 R:HIS190 3.3 28.1 1.0
CD2 S:HIS266 3.3 29.9 1.0
CG S:GLU234 4.0 33.4 1.0
ND1 S:HIS219 4.2 31.1 1.0
ND1 R:HIS190 4.3 30.0 1.0
ND1 S:HIS266 4.3 29.1 1.0
CG S:HIS219 4.3 30.1 1.0
ND1 R:HIS230 4.3 28.8 1.0
CG S:HIS266 4.3 31.4 1.0
CG R:HIS190 4.4 28.7 1.0
CG R:HIS230 4.4 29.4 1.0
CG1 S:ILE223 4.5 30.4 1.0
CG2 R:VAL194 4.7 33.6 1.0
O S:HOH2031 4.7 28.2 1.0
CB S:GLU234 4.9 36.0 1.0
CD1 S:ILE223 5.0 28.3 1.0

Reference:

Q.Xu, H.L.Axelrod, E.C.Abresch, M.L.Paddock, M.Y.Okamura, G.Feher. X-Ray Structure Determination of Three Mutants of the Bacterial Photosynthetic Reaction Centers From Rb. Sphaeroides; Altered Proton Transfer Pathways. Structure V. 12 703 2004.
ISSN: ISSN 0969-2126
PubMed: 15062092
DOI: 10.1016/J.STR.2004.03.001
Page generated: Sat Aug 3 14:31:28 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy