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Iron in PDB 1s0h: Structure Determination of Haemoglobin From Donkey(Equus Asinus) at 3.0 Angstrom Resolution

Protein crystallography data

The structure of Structure Determination of Haemoglobin From Donkey(Equus Asinus) at 3.0 Angstrom Resolution, PDB code: 1s0h was solved by D.Balasundaresan, M.N.Ponnuswamy, K.Saraboji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.18 / 3.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 107.664, 63.084, 54.042, 90.00, 111.75, 90.00
R / Rfree (%) 18.1 / 28.5

Iron Binding Sites:

The binding sites of Iron atom in the Structure Determination of Haemoglobin From Donkey(Equus Asinus) at 3.0 Angstrom Resolution (pdb code 1s0h). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure Determination of Haemoglobin From Donkey(Equus Asinus) at 3.0 Angstrom Resolution, PDB code: 1s0h:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1s0h

Go back to Iron Binding Sites List in 1s0h
Iron binding site 1 out of 2 in the Structure Determination of Haemoglobin From Donkey(Equus Asinus) at 3.0 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure Determination of Haemoglobin From Donkey(Equus Asinus) at 3.0 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe142

b:26.6
occ:1.00
FE A:HEM142 0.0 26.6 1.0
NC A:HEM142 1.8 30.7 1.0
NB A:HEM142 1.8 26.8 1.0
NA A:HEM142 2.0 26.8 1.0
ND A:HEM142 2.1 30.9 1.0
NE2 A:HIS87 2.2 27.6 1.0
C4C A:HEM142 2.8 35.5 1.0
C1B A:HEM142 2.8 23.8 1.0
C1C A:HEM142 2.8 31.0 1.0
C4A A:HEM142 2.9 26.0 1.0
C4B A:HEM142 2.9 28.8 1.0
C1D A:HEM142 3.0 32.2 1.0
CD2 A:HIS87 3.0 27.2 1.0
C1A A:HEM142 3.1 29.7 1.0
CHB A:HEM142 3.2 26.8 1.0
C4D A:HEM142 3.2 30.4 1.0
CE1 A:HIS87 3.2 27.0 1.0
CHC A:HEM142 3.3 30.1 1.0
CHD A:HEM142 3.3 35.7 1.0
CHA A:HEM142 3.5 29.9 1.0
C3C A:HEM142 4.1 34.4 1.0
C2C A:HEM142 4.1 34.6 1.0
C2B A:HEM142 4.1 19.6 1.0
C3A A:HEM142 4.1 30.8 1.0
C3B A:HEM142 4.1 24.8 1.0
CG A:HIS87 4.2 30.1 1.0
ND1 A:HIS87 4.2 23.4 1.0
C2A A:HEM142 4.2 35.1 1.0
C2D A:HEM142 4.3 26.9 1.0
NE2 A:HIS58 4.3 36.4 1.0
C3D A:HEM142 4.4 28.6 1.0
CE1 A:HIS58 4.9 35.2 1.0

Iron binding site 2 out of 2 in 1s0h

Go back to Iron Binding Sites List in 1s0h
Iron binding site 2 out of 2 in the Structure Determination of Haemoglobin From Donkey(Equus Asinus) at 3.0 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure Determination of Haemoglobin From Donkey(Equus Asinus) at 3.0 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe147

b:32.6
occ:1.00
FE B:HEM147 0.0 32.6 1.0
NC B:HEM147 2.0 30.0 1.0
NA B:HEM147 2.1 30.6 1.0
NB B:HEM147 2.1 27.4 1.0
ND B:HEM147 2.2 33.4 1.0
NE2 B:HIS92 2.3 49.8 1.0
C4C B:HEM147 3.0 32.0 1.0
C4A B:HEM147 3.0 31.4 1.0
C1B B:HEM147 3.1 26.4 1.0
C1C B:HEM147 3.1 27.6 1.0
CE1 B:HIS92 3.1 52.4 1.0
C1A B:HEM147 3.1 30.1 1.0
C4B B:HEM147 3.2 29.1 1.0
C1D B:HEM147 3.2 30.9 1.0
CD2 B:HIS92 3.3 53.4 1.0
C4D B:HEM147 3.4 30.7 1.0
CHB B:HEM147 3.4 28.1 1.0
CHD B:HEM147 3.5 29.4 1.0
CHC B:HEM147 3.6 25.8 1.0
CHA B:HEM147 3.7 26.3 1.0
CG2 B:VAL67 4.1 28.7 1.0
NE2 B:HIS63 4.2 23.9 1.0
C3C B:HEM147 4.2 31.1 1.0
C3A B:HEM147 4.3 32.4 1.0
C2C B:HEM147 4.3 26.7 1.0
ND1 B:HIS92 4.3 52.6 1.0
C2A B:HEM147 4.3 35.5 1.0
C2D B:HEM147 4.3 34.1 1.0
C2B B:HEM147 4.4 26.4 1.0
CG B:HIS92 4.4 55.7 1.0
C3B B:HEM147 4.4 26.8 1.0
C3D B:HEM147 4.5 33.8 1.0

Reference:

D.Balasundaresan, K.Saraboji, M.N.Ponnuswamy. Crystal Structure of Haemoglobin From Donkey (Equus Asinus) at 3A Resolution Biochimie V. 88 719 2006.
ISSN: ISSN 0300-9084
PubMed: 16488065
DOI: 10.1016/J.BIOCHI.2006.01.001
Page generated: Sat Aug 3 14:32:26 2024

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