Iron in PDB 1s5x: The Crystal Structure of Trematomus Bernacchii Hemoglobin Oxidized By Air

The structure of The Crystal Structure of Trematomus Bernacchii Hemoglobin Oxidized By Air, PDB code: 1s5x was solved by L.Vitagliano, G.Bonomi, A.Riccio, G.Di Prisco, G.Smulevich, L.Mazzarella, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	108.516, 65.095, 55.750, 90.00, 113.48, 90.00
R / Rfree (%)	19 / 23.3

The binding sites of Iron atom in the The Crystal Structure of Trematomus Bernacchii Hemoglobin Oxidized By Air (pdb code 1s5x). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The Crystal Structure of Trematomus Bernacchii Hemoglobin Oxidized By Air, PDB code: 1s5x:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the The Crystal Structure of Trematomus Bernacchii Hemoglobin Oxidized By Air


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Crystal Structure of Trematomus Bernacchii Hemoglobin Oxidized By Air within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe200 b:28.5 occ:1.00 FE A:HEM200 0.0 28.5 1.0 NC A:HEM200 2.0 27.3 1.0 ND A:HEM200 2.0 30.2 1.0 NB A:HEM200 2.0 26.6 1.0 NE2 A:HIS88 2.0 26.9 1.0 NA A:HEM200 2.1 30.1 1.0 O A:HOH500 2.1 27.4 1.0 CE1 A:HIS88 3.0 24.7 1.0 C4C A:HEM200 3.0 27.7 1.0 C1C A:HEM200 3.0 27.3 1.0 C1D A:HEM200 3.0 31.3 1.0 C4D A:HEM200 3.1 32.1 1.0 C4B A:HEM200 3.1 26.3 1.0 C1B A:HEM200 3.1 25.9 1.0 C4A A:HEM200 3.1 28.7 1.0 CD2 A:HIS88 3.1 27.0 1.0 C1A A:HEM200 3.2 31.3 1.0 CHD A:HEM200 3.3 29.7 1.0 CHC A:HEM200 3.4 27.8 1.0 CHB A:HEM200 3.5 25.9 1.0 CHA A:HEM200 3.5 32.6 1.0 NE2 A:HIS59 4.1 36.8 1.0 ND1 A:HIS88 4.1 27.2 1.0 CG A:HIS88 4.3 28.7 1.0 C3C A:HEM200 4.3 26.9 1.0 C2C A:HEM200 4.3 27.6 1.0 C3D A:HEM200 4.3 33.4 1.0 C2D A:HEM200 4.3 32.1 1.0 C2B A:HEM200 4.4 26.4 1.0 C3B A:HEM200 4.4 25.6 1.0 C3A A:HEM200 4.4 31.1 1.0 C2A A:HEM200 4.4 33.3 1.0 CE1 A:HIS59 4.5 33.9 1.0 CG2 A:VAL63 4.6 32.4 1.0

Iron binding site 2 out of 2 in the The Crystal Structure of Trematomus Bernacchii Hemoglobin Oxidized By Air


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Crystal Structure of Trematomus Bernacchii Hemoglobin Oxidized By Air within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe400 b:36.4 occ:1.00 FE B:HEM400 0.0 36.4 1.0 ND B:HEM400 2.0 37.4 1.0 NE2 B:HIS92 2.0 39.4 1.0 NB B:HEM400 2.0 35.6 1.0 NC B:HEM400 2.0 37.4 1.0 NE2 B:HIS63 2.0 27.0 1.0 NA B:HEM400 2.0 38.4 1.0 CE1 B:HIS63 2.8 24.4 1.0 CD2 B:HIS92 2.9 39.4 1.0 C4D B:HEM400 3.0 38.2 1.0 C1A B:HEM400 3.1 38.0 1.0 C1D B:HEM400 3.1 36.9 1.0 CE1 B:HIS92 3.1 38.5 1.0 C4B B:HEM400 3.1 35.2 1.0 C1C B:HEM400 3.1 35.5 1.0 C1B B:HEM400 3.1 34.8 1.0 C4C B:HEM400 3.1 36.7 1.0 C4A B:HEM400 3.1 37.2 1.0 CD2 B:HIS63 3.3 26.0 1.0 CHA B:HEM400 3.3 38.4 1.0 CHC B:HEM400 3.4 34.7 1.0 CHD B:HEM400 3.4 36.5 1.0 CHB B:HEM400 3.4 36.6 1.0 ND1 B:HIS63 4.1 25.6 1.0 CG B:HIS92 4.1 39.9 1.0 ND1 B:HIS92 4.2 39.0 1.0 C3D B:HEM400 4.3 37.6 1.0 CG B:HIS63 4.3 25.0 1.0 C2D B:HEM400 4.3 37.6 1.0 C2A B:HEM400 4.3 40.0 1.0 C3C B:HEM400 4.3 36.6 1.0 C3A B:HEM400 4.4 38.8 1.0 C2C B:HEM400 4.4 37.0 1.0 C3B B:HEM400 4.4 34.5 1.0 C2B B:HEM400 4.4 35.9 1.0 CG2 B:VAL67 4.9 24.9 1.0

L.Vitagliano, G.Bonomi, A.Riccio, G.Di Prisco, G.Smulevich, L.Mazzarella. The Oxidation Process of Antarctic Fish Hemoglobins Eur.J.Biochem. V. 271 1651 2004.
ISSN: ISSN 0014-2956
PubMed: 15096204
DOI: 10.1111/J.1432-1033.2004.04054.X