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Iron in PDB 1sy3: 1.00 A Crystal Structure of D30N Mutant of Nitrophorin 4 From Rhodnius Prolixus Complexed with Nitric Oxide

Protein crystallography data

The structure of 1.00 A Crystal Structure of D30N Mutant of Nitrophorin 4 From Rhodnius Prolixus Complexed with Nitric Oxide, PDB code: 1sy3 was solved by E.M.Maes, A.Weichsel, J.F.Andersen, D.Shepley, W.R.Montfort, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 9.68 / 1.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 70.431, 42.729, 53.124, 90.00, 94.27, 90.00
R / Rfree (%) 14.2 / 15.9

Iron Binding Sites:

The binding sites of Iron atom in the 1.00 A Crystal Structure of D30N Mutant of Nitrophorin 4 From Rhodnius Prolixus Complexed with Nitric Oxide (pdb code 1sy3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the 1.00 A Crystal Structure of D30N Mutant of Nitrophorin 4 From Rhodnius Prolixus Complexed with Nitric Oxide, PDB code: 1sy3:

Iron binding site 1 out of 1 in 1sy3

Go back to Iron Binding Sites List in 1sy3
Iron binding site 1 out of 1 in the 1.00 A Crystal Structure of D30N Mutant of Nitrophorin 4 From Rhodnius Prolixus Complexed with Nitric Oxide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 1.00 A Crystal Structure of D30N Mutant of Nitrophorin 4 From Rhodnius Prolixus Complexed with Nitric Oxide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe185

b:4.8
occ:1.00
FE A:HEM185 0.0 4.8 1.0
N A:NO186 1.8 7.3 1.0
NA A:HEM185 2.0 4.9 1.0
NB A:HEM185 2.0 5.2 1.0
ND A:HEM185 2.0 5.3 1.0
NC A:HEM185 2.0 5.2 1.0
NE2 A:HIS59 2.1 4.8 1.0
O A:NO186 2.9 12.2 1.0
C1A A:HEM185 3.0 5.3 1.0
C1B A:HEM185 3.0 5.4 1.0
C4D A:HEM185 3.0 5.9 1.0
C4A A:HEM185 3.0 5.2 1.0
C4C A:HEM185 3.0 6.0 1.0
C1C A:HEM185 3.0 5.8 1.0
CE1 A:HIS59 3.0 4.3 1.0
C4B A:HEM185 3.0 5.6 1.0
C1D A:HEM185 3.0 6.3 1.0
CD2 A:HIS59 3.1 4.7 1.0
CHB A:HEM185 3.4 6.1 1.0
CHD A:HEM185 3.4 6.9 1.0
CHC A:HEM185 3.4 6.2 1.0
CHA A:HEM185 3.4 5.8 1.0
ND1 A:HIS59 4.2 4.4 1.0
CG A:HIS59 4.2 4.2 1.0
C3C A:HEM185 4.2 7.0 1.0
C3B A:HEM185 4.2 6.8 1.0
C2A A:HEM185 4.2 5.7 1.0
C2C A:HEM185 4.2 6.5 1.0
C2B A:HEM185 4.2 6.1 1.0
C3A A:HEM185 4.2 5.8 1.0
C2D A:HEM185 4.3 7.6 1.0
C3D A:HEM185 4.3 7.3 1.0
CD2 A:LEU133 4.6 9.8 1.0
O A:HOH894 4.9 25.4 1.0
CD2 A:LEU130 4.9 11.6 0.5

Reference:

E.M.Maes, A.Weichsel, J.F.Andersen, D.Shepley, W.R.Montfort. Role of Binding Site Loops in Controlling Nitric Oxide Release: Structure and Kinetics of Mutant Forms of Nitrophorin 4 Biochemistry V. 43 6679 2004.
ISSN: ISSN 0006-2960
PubMed: 15157102
DOI: 10.1021/BI049748A
Page generated: Sat Aug 3 15:05:27 2024

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