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Iron in PDB 1u18: 1.96 A Crystal Structure of H60C Mutant of Nitrophorin Complexed with Histamine

Protein crystallography data

The structure of 1.96 A Crystal Structure of H60C Mutant of Nitrophorin Complexed with Histamine, PDB code: 1u18 was solved by S.W.Vetter, D.B.Goodin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.00 / 1.96
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 38.820, 73.850, 65.380, 90.00, 98.57, 90.00
R / Rfree (%) 18.5 / 22.6

Iron Binding Sites:

The binding sites of Iron atom in the 1.96 A Crystal Structure of H60C Mutant of Nitrophorin Complexed with Histamine (pdb code 1u18). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the 1.96 A Crystal Structure of H60C Mutant of Nitrophorin Complexed with Histamine, PDB code: 1u18:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1u18

Go back to Iron Binding Sites List in 1u18
Iron binding site 1 out of 2 in the 1.96 A Crystal Structure of H60C Mutant of Nitrophorin Complexed with Histamine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 1.96 A Crystal Structure of H60C Mutant of Nitrophorin Complexed with Histamine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:32.4
occ:1.00
FE A:HEM201 0.0 32.4 1.0
NC A:HEM201 2.0 36.8 1.0
NA A:HEM201 2.0 33.0 1.0
NB A:HEM201 2.0 31.6 1.0
ND A:HEM201 2.1 36.3 1.0
O A:HOH410 2.2 28.6 1.0
NE2 A:HSM401 2.3 29.6 1.0
C1C A:HEM201 3.0 29.7 1.0
C4B A:HEM201 3.0 27.8 1.0
C4A A:HEM201 3.0 29.6 1.0
C1D A:HEM201 3.0 33.1 1.0
C4C A:HEM201 3.0 37.7 1.0
C1B A:HEM201 3.0 28.8 1.0
C1A A:HEM201 3.0 32.6 1.0
C4D A:HEM201 3.1 35.4 1.0
CD2 A:HSM401 3.2 31.9 1.0
CE1 A:HSM401 3.3 31.6 1.0
CHC A:HEM201 3.4 30.6 1.0
CHD A:HEM201 3.4 30.4 1.0
CHA A:HEM201 3.4 31.8 1.0
CHB A:HEM201 3.5 30.1 1.0
C2C A:HEM201 4.2 34.4 1.0
C3C A:HEM201 4.2 38.7 1.0
C3A A:HEM201 4.2 28.6 1.0
C2A A:HEM201 4.3 32.2 1.0
C3B A:HEM201 4.3 25.0 1.0
C2D A:HEM201 4.3 33.9 1.0
C3D A:HEM201 4.3 30.4 1.0
C2B A:HEM201 4.3 24.0 1.0
ND1 A:HSM401 4.4 29.8 1.0
CG A:HSM401 4.4 32.7 1.0
O A:HOH491 4.4 41.3 1.0

Iron binding site 2 out of 2 in 1u18

Go back to Iron Binding Sites List in 1u18
Iron binding site 2 out of 2 in the 1.96 A Crystal Structure of H60C Mutant of Nitrophorin Complexed with Histamine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of 1.96 A Crystal Structure of H60C Mutant of Nitrophorin Complexed with Histamine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:38.8
occ:1.00
FE B:HEM201 0.0 38.8 1.0
ND B:HEM201 2.0 38.9 1.0
NA B:HEM201 2.0 33.9 1.0
NB B:HEM201 2.1 36.0 1.0
NC B:HEM201 2.1 39.2 1.0
O B:HOH417 2.3 32.3 1.0
NE2 B:HSM402 2.3 34.8 1.0
C1A B:HEM201 3.0 30.7 1.0
C1D B:HEM201 3.0 44.5 1.0
C4A B:HEM201 3.0 34.6 1.0
C1C B:HEM201 3.1 32.4 1.0
C4D B:HEM201 3.1 37.9 1.0
C4C B:HEM201 3.1 40.9 1.0
C4B B:HEM201 3.1 35.3 1.0
C1B B:HEM201 3.1 31.3 1.0
CE1 B:HSM402 3.2 33.8 1.0
CD2 B:HSM402 3.3 37.2 1.0
CHC B:HEM201 3.4 39.9 1.0
CHA B:HEM201 3.4 39.4 1.0
CHD B:HEM201 3.4 41.7 1.0
CHB B:HEM201 3.5 34.1 1.0
C2D B:HEM201 4.2 47.9 1.0
C3D B:HEM201 4.3 45.5 1.0
C2C B:HEM201 4.3 37.5 1.0
C2A B:HEM201 4.3 32.2 1.0
C3A B:HEM201 4.3 34.5 1.0
C3C B:HEM201 4.3 43.8 1.0
C3B B:HEM201 4.3 40.6 1.0
C2B B:HEM201 4.3 32.6 1.0
ND1 B:HSM402 4.4 39.0 1.0
CG B:HSM402 4.4 37.4 1.0
CD2 B:LEU124 5.0 36.7 1.0

Reference:

S.W.Vetter, D.B.Goodin. 1.96 A Crystal Structure of H60C Mutant of Nitrophorin Complexed with Histamine To Be Published.
Page generated: Sat Aug 3 15:22:47 2024

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