Iron in PDB 1umo: The Crystal Structure of Cytoglobin: the Fourth Globin Type Discovered in Man

The structure of The Crystal Structure of Cytoglobin: the Fourth Globin Type Discovered in Man, PDB code: 1umo was solved by D.De Sanctis, S.Dewilde, A.Pesce, L.Moens, P.Ascenzi, T.Hankeln, T.Burmester, M.Bolognesi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.88 / 2.59
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.617, 72.001, 98.334, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 28.4

The binding sites of Iron atom in the The Crystal Structure of Cytoglobin: the Fourth Globin Type Discovered in Man (pdb code 1umo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The Crystal Structure of Cytoglobin: the Fourth Globin Type Discovered in Man, PDB code: 1umo:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the The Crystal Structure of Cytoglobin: the Fourth Globin Type Discovered in Man


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Crystal Structure of Cytoglobin: the Fourth Globin Type Discovered in Man within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1172 b:35.3 occ:1.00 FE A:HEM1172 0.0 35.3 1.0 NB A:HEM1172 2.0 30.9 1.0 NA A:HEM1172 2.0 32.8 1.0 ND A:HEM1172 2.1 32.8 1.0 NC A:HEM1172 2.2 31.9 1.0 NE2 A:HIS113 2.2 31.5 1.0 NE2 A:HIS81 2.7 41.4 0.5 C4A A:HEM1172 3.0 32.3 1.0 C1B A:HEM1172 3.0 29.0 1.0 C1A A:HEM1172 3.1 33.7 1.0 C4B A:HEM1172 3.1 30.8 1.0 C4D A:HEM1172 3.1 33.8 1.0 C1C A:HEM1172 3.2 30.6 1.0 CE1 A:HIS113 3.2 32.7 1.0 C1D A:HEM1172 3.2 32.1 1.0 CD2 A:HIS113 3.2 33.3 1.0 C4C A:HEM1172 3.2 31.8 1.0 CHB A:HEM1172 3.3 31.4 1.0 CD2 A:HIS81 3.4 41.7 0.5 CHA A:HEM1172 3.4 33.4 1.0 CHC A:HEM1172 3.5 30.0 1.0 CHD A:HEM1172 3.6 31.6 1.0 NE2 A:HIS81 3.8 45.1 0.5 CE1 A:HIS81 3.9 41.8 0.5 C3A A:HEM1172 4.2 34.1 1.0 C2B A:HEM1172 4.2 27.3 1.0 C2A A:HEM1172 4.2 35.9 1.0 C3B A:HEM1172 4.2 29.2 1.0 ND1 A:HIS113 4.3 32.5 1.0 CE1 A:HIS81 4.3 45.2 0.5 CG A:HIS113 4.3 33.0 1.0 C3D A:HEM1172 4.4 33.3 1.0 C2C A:HEM1172 4.4 31.0 1.0 C2D A:HEM1172 4.4 32.3 1.0 C3C A:HEM1172 4.4 30.9 1.0 CG2 A:VAL85 4.5 39.5 0.5 CG2 A:VAL85 4.6 39.3 0.5 CD2 A:HIS117 4.6 43.0 1.0 CG A:HIS81 4.6 42.5 0.5 ND1 A:HIS81 4.8 43.2 0.5 NE2 A:HIS117 4.9 42.4 1.0

Iron binding site 2 out of 2 in the The Crystal Structure of Cytoglobin: the Fourth Globin Type Discovered in Man


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Crystal Structure of Cytoglobin: the Fourth Globin Type Discovered in Man within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1172 b:37.9 occ:1.00 FE B:HEM1172 0.0 37.9 1.0 NE2 B:HIS113 2.0 30.3 1.0 NB B:HEM1172 2.1 36.5 1.0 NC B:HEM1172 2.1 35.2 1.0 NA B:HEM1172 2.1 37.0 1.0 ND B:HEM1172 2.2 37.2 1.0 NE2 B:HIS81 2.6 34.3 1.0 CE1 B:HIS113 2.9 31.0 1.0 CD2 B:HIS113 3.0 30.7 1.0 C4B B:HEM1172 3.1 36.1 1.0 C4A B:HEM1172 3.1 37.0 1.0 C1C B:HEM1172 3.1 36.1 1.0 C1B B:HEM1172 3.1 36.9 1.0 C1A B:HEM1172 3.1 37.6 1.0 C4C B:HEM1172 3.1 36.3 1.0 C1D B:HEM1172 3.1 36.0 1.0 C4D B:HEM1172 3.1 38.3 1.0 CD2 B:HIS81 3.4 37.1 1.0 CHC B:HEM1172 3.4 35.8 1.0 CHB B:HEM1172 3.4 37.8 1.0 CHD B:HEM1172 3.5 35.9 1.0 CHA B:HEM1172 3.5 38.0 1.0 CE1 B:HIS81 3.7 34.6 1.0 ND1 B:HIS113 4.1 32.0 1.0 CG B:HIS113 4.1 34.3 1.0 C3A B:HEM1172 4.3 37.0 1.0 C3B B:HEM1172 4.3 37.9 1.0 C2B B:HEM1172 4.3 37.9 1.0 C2A B:HEM1172 4.3 36.2 1.0 C2C B:HEM1172 4.3 35.8 1.0 C3C B:HEM1172 4.3 35.3 1.0 C2D B:HEM1172 4.4 37.4 1.0 C3D B:HEM1172 4.4 38.5 1.0 CG B:HIS81 4.6 36.0 1.0 ND1 B:HIS81 4.7 37.9 1.0

D.De Sanctis, S.Dewilde, A.Pesce, L.Moens, P.Ascenzi, T.Hankeln, T.Burmester, M.Bolognesi. Crystal Structure of Cytoglobin: the Fourth Globin Type Discovered in Man Displays Heme Hexa-Coordination. J.Mol.Biol. V. 336 917 2004.
ISSN: ISSN 0022-2836
PubMed: 15095869
DOI: 10.1016/J.JMB.2003.12.063