Iron in PDB 1upx: The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States.
Protein crystallography data
The structure of The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States., PDB code: 1upx
was solved by
D.Aragao,
S.Macedo,
E.P.Mitchell,
P.F.Lindley,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
27.52 /
1.25
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
57.300,
61.200,
72.000,
82.80,
73.70,
87.30
|
R / Rfree (%)
|
14 /
15.3
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Iron atom in the The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States.
(pdb code 1upx). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 24 binding sites of Iron where determined in the
The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States., PDB code: 1upx:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 24 in 1upx
Go back to
Iron Binding Sites List in 1upx
Iron binding site 1 out
of 24 in the The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1544
b:4.0
occ:1.00
|
FE1
|
A:SF41544
|
0.0
|
4.0
|
1.0
|
SG
|
A:CYS6
|
2.3
|
4.4
|
1.0
|
S3
|
A:SF41544
|
2.3
|
4.3
|
1.0
|
S4
|
A:SF41544
|
2.3
|
4.2
|
1.0
|
S2
|
A:SF41544
|
2.3
|
4.2
|
1.0
|
FE4
|
A:SF41544
|
2.7
|
4.4
|
1.0
|
FE2
|
A:SF41544
|
2.7
|
4.1
|
1.0
|
FE3
|
A:SF41544
|
2.8
|
4.2
|
1.0
|
CB
|
A:CYS6
|
3.2
|
4.2
|
1.0
|
S1
|
A:SF41544
|
3.9
|
4.4
|
1.0
|
C
|
A:CYS6
|
4.0
|
4.4
|
1.0
|
NZ
|
A:LYS26
|
4.0
|
6.0
|
1.0
|
CG
|
A:GLN8
|
4.0
|
4.2
|
1.0
|
O
|
A:CYS6
|
4.1
|
5.3
|
1.0
|
CE
|
A:LYS26
|
4.1
|
7.1
|
1.0
|
CA
|
A:CYS6
|
4.2
|
4.4
|
1.0
|
N
|
A:GLN8
|
4.2
|
4.1
|
1.0
|
N
|
A:TYR7
|
4.4
|
4.6
|
1.0
|
NE2
|
A:GLN8
|
4.7
|
6.0
|
1.0
|
SG
|
A:CYS18
|
4.7
|
5.5
|
1.0
|
N
|
A:CYS9
|
4.8
|
4.1
|
1.0
|
CA
|
A:TYR7
|
4.9
|
4.7
|
1.0
|
CD
|
A:GLN8
|
4.9
|
5.0
|
1.0
|
SG
|
A:CYS9
|
4.9
|
4.8
|
1.0
|
SG
|
A:CYS24
|
4.9
|
4.2
|
1.0
|
CB
|
A:GLN8
|
5.0
|
4.6
|
1.0
|
O
|
A:HOH2094
|
5.0
|
5.0
|
1.0
|
C
|
A:TYR7
|
5.0
|
4.6
|
1.0
|
|
Iron binding site 2 out
of 24 in 1upx
Go back to
Iron Binding Sites List in 1upx
Iron binding site 2 out
of 24 in the The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1544
b:4.1
occ:1.00
|
FE2
|
A:SF41544
|
0.0
|
4.1
|
1.0
|
S3
|
A:SF41544
|
2.3
|
4.3
|
1.0
|
SG
|
A:CYS9
|
2.3
|
4.8
|
1.0
|
S1
|
A:SF41544
|
2.3
|
4.4
|
1.0
|
S4
|
A:SF41544
|
2.4
|
4.2
|
1.0
|
FE3
|
A:SF41544
|
2.7
|
4.2
|
1.0
|
FE4
|
A:SF41544
|
2.7
|
4.4
|
1.0
|
FE1
|
A:SF41544
|
2.7
|
4.0
|
1.0
|
CB
|
A:CYS9
|
3.2
|
4.8
|
1.0
|
N
|
A:CYS9
|
3.8
|
4.1
|
1.0
|
S2
|
A:SF41544
|
3.9
|
4.2
|
1.0
|
CA
|
A:CYS9
|
4.0
|
4.4
|
1.0
|
OG1
|
A:THR75
|
4.4
|
3.9
|
1.0
|
CG2
|
A:THR75
|
4.4
|
3.7
|
1.0
|
C
|
A:CYS9
|
4.5
|
4.6
|
1.0
|
O
|
A:CYS9
|
4.5
|
4.5
|
1.0
|
O
|
A:HOH2781
|
4.6
|
7.5
|
1.0
|
N
|
A:THR12
|
4.6
|
5.2
|
1.0
|
SG
|
A:CYS24
|
4.7
|
4.2
|
1.0
|
CA
|
A:THR12
|
4.8
|
5.3
|
1.0
|
CG
|
A:GLN8
|
4.8
|
4.2
|
1.0
|
SG
|
A:CYS18
|
4.8
|
5.5
|
1.0
|
CB
|
A:THR12
|
4.8
|
5.2
|
1.0
|
C
|
A:GLN8
|
4.9
|
4.2
|
1.0
|
SG
|
A:CYS6
|
4.9
|
4.4
|
1.0
|
N
|
A:GLN8
|
4.9
|
4.1
|
1.0
|
CB
|
A:CYS24
|
4.9
|
5.4
|
1.0
|
|
Iron binding site 3 out
of 24 in 1upx
Go back to
Iron Binding Sites List in 1upx
Iron binding site 3 out
of 24 in the The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1544
b:4.2
occ:1.00
|
FE3
|
A:SF41544
|
0.0
|
4.2
|
1.0
|
S2
|
A:SF41544
|
2.3
|
4.2
|
1.0
|
SG
|
A:CYS24
|
2.3
|
4.2
|
1.0
|
S1
|
A:SF41544
|
2.3
|
4.4
|
1.0
|
S4
|
A:SF41544
|
2.4
|
4.2
|
1.0
|
FE2
|
A:SF41544
|
2.7
|
4.1
|
1.0
|
FE4
|
A:SF41544
|
2.7
|
4.4
|
1.0
|
FE1
|
A:SF41544
|
2.8
|
4.0
|
1.0
|
CB
|
A:CYS24
|
3.3
|
5.4
|
1.0
|
S3
|
A:SF41544
|
3.9
|
4.3
|
1.0
|
N
|
A:CYS24
|
3.9
|
5.5
|
1.0
|
CA
|
A:GLY22
|
4.2
|
6.2
|
1.0
|
O
|
A:HOH2191
|
4.2
|
5.7
|
1.0
|
CA
|
A:CYS24
|
4.3
|
5.4
|
1.0
|
CE
|
A:LYS26
|
4.3
|
7.1
|
1.0
|
N
|
A:VAL23
|
4.5
|
5.7
|
1.0
|
CB
|
A:LYS26
|
4.5
|
6.2
|
1.0
|
SG
|
A:CYS9
|
4.6
|
4.8
|
1.0
|
C
|
A:GLY22
|
4.6
|
5.9
|
1.0
|
SG
|
A:CYS18
|
4.7
|
5.5
|
1.0
|
SG
|
A:CYS6
|
4.8
|
4.4
|
1.0
|
CG2
|
A:THR75
|
4.9
|
3.7
|
1.0
|
NZ
|
A:LYS26
|
4.9
|
6.0
|
1.0
|
O
|
A:HOH2781
|
4.9
|
7.5
|
1.0
|
|
Iron binding site 4 out
of 24 in 1upx
Go back to
Iron Binding Sites List in 1upx
Iron binding site 4 out
of 24 in the The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1544
b:4.4
occ:1.00
|
FE4
|
A:SF41544
|
0.0
|
4.4
|
1.0
|
SG
|
A:CYS18
|
2.3
|
5.5
|
1.0
|
S1
|
A:SF41544
|
2.3
|
4.4
|
1.0
|
S2
|
A:SF41544
|
2.3
|
4.2
|
1.0
|
S3
|
A:SF41544
|
2.3
|
4.3
|
1.0
|
FE1
|
A:SF41544
|
2.7
|
4.0
|
1.0
|
FE2
|
A:SF41544
|
2.7
|
4.1
|
1.0
|
FE3
|
A:SF41544
|
2.7
|
4.2
|
1.0
|
CB
|
A:CYS18
|
3.3
|
5.5
|
1.0
|
S4
|
A:SF41544
|
3.9
|
4.2
|
1.0
|
CA
|
A:GLY22
|
4.0
|
6.2
|
1.0
|
O
|
A:CYS6
|
4.0
|
5.3
|
1.0
|
N
|
A:VAL23
|
4.1
|
5.7
|
1.0
|
OG1
|
A:THR12
|
4.1
|
5.7
|
1.0
|
CA
|
A:THR12
|
4.2
|
5.3
|
1.0
|
CB
|
A:THR12
|
4.4
|
5.2
|
1.0
|
C
|
A:GLY22
|
4.6
|
5.9
|
1.0
|
CA
|
A:CYS18
|
4.6
|
6.2
|
1.0
|
SG
|
A:CYS6
|
4.6
|
4.4
|
1.0
|
CB
|
A:CYS6
|
4.6
|
4.2
|
1.0
|
SG
|
A:CYS9
|
4.6
|
4.8
|
1.0
|
N
|
A:CYS18
|
4.7
|
5.8
|
1.0
|
C
|
A:CYS6
|
4.7
|
4.4
|
1.0
|
SG
|
A:CYS24
|
4.8
|
4.2
|
1.0
|
N
|
A:THR12
|
4.8
|
5.2
|
1.0
|
CB
|
A:VAL23
|
5.0
|
6.5
|
1.0
|
N
|
A:CYS24
|
5.0
|
5.5
|
1.0
|
|
Iron binding site 5 out
of 24 in 1upx
Go back to
Iron Binding Sites List in 1upx
Iron binding site 5 out
of 24 in the The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1545
b:3.9
occ:0.65
|
FE1
|
A:SF31545
|
0.0
|
3.9
|
0.7
|
FE5
|
A:FSO1546
|
0.3
|
4.4
|
0.3
|
O10
|
A:FSO1546
|
2.1
|
2.6
|
0.3
|
S6
|
A:FSO1546
|
2.2
|
5.2
|
0.3
|
S3
|
A:SF31545
|
2.2
|
5.0
|
0.7
|
S2
|
A:SF31545
|
2.3
|
4.9
|
0.7
|
S1
|
A:SF31545
|
2.3
|
5.7
|
0.7
|
SG
|
A:CYS427
|
2.3
|
4.6
|
1.0
|
S5
|
A:FSO1546
|
2.5
|
3.0
|
0.3
|
FE6
|
A:FSO1546
|
2.7
|
4.5
|
0.3
|
FE4
|
A:SF31545
|
2.7
|
5.8
|
0.7
|
FE3
|
A:SF31545
|
2.8
|
6.7
|
0.7
|
FE8
|
A:FSO1546
|
3.3
|
7.4
|
0.3
|
CB
|
A:CYS427
|
3.4
|
4.4
|
1.0
|
O8
|
A:FSO1546
|
3.7
|
6.3
|
0.5
|
O
|
A:HOH2841
|
3.9
|
3.9
|
0.2
|
FE7
|
A:SF31545
|
3.9
|
4.6
|
0.7
|
FE7
|
A:FSO1546
|
3.9
|
5.3
|
0.3
|
CB
|
A:CYS399
|
3.9
|
6.0
|
0.3
|
CD1
|
A:TRP288
|
3.9
|
4.4
|
1.0
|
CG
|
A:GLU264
|
4.0
|
3.9
|
1.0
|
O9
|
A:FSO1546
|
4.1
|
4.5
|
0.5
|
SG
|
A:CYS399
|
4.1
|
7.1
|
0.3
|
N
|
A:CYS427
|
4.2
|
3.8
|
1.0
|
CA
|
A:CYS399
|
4.4
|
6.0
|
0.3
|
NE1
|
A:TRP288
|
4.4
|
4.9
|
1.0
|
CA
|
A:CYS427
|
4.4
|
3.8
|
1.0
|
OE2
|
A:GLU487
|
4.4
|
9.1
|
0.7
|
CB
|
A:CYS399
|
4.5
|
3.4
|
0.7
|
SG
|
A:CYS399
|
4.5
|
4.4
|
0.7
|
CA
|
A:CYS399
|
4.6
|
3.2
|
0.7
|
CD
|
A:GLU264
|
4.6
|
3.6
|
1.0
|
S7
|
A:FSO1546
|
4.7
|
8.1
|
0.3
|
OE2
|
A:GLU264
|
4.7
|
4.2
|
1.0
|
N
|
A:ASP400
|
4.8
|
5.8
|
0.3
|
OG
|
A:SER263
|
4.9
|
4.5
|
1.0
|
CG
|
A:TRP288
|
4.9
|
4.3
|
1.0
|
N
|
A:ASP400
|
4.9
|
3.4
|
0.7
|
SG
|
A:CYS308
|
5.0
|
4.8
|
1.0
|
|
Iron binding site 6 out
of 24 in 1upx
Go back to
Iron Binding Sites List in 1upx
Iron binding site 6 out
of 24 in the The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1545
b:6.7
occ:0.65
|
FE3
|
A:SF31545
|
0.0
|
6.7
|
0.7
|
FE6
|
A:FSO1546
|
0.5
|
4.5
|
0.3
|
S1
|
A:SF31545
|
2.1
|
5.7
|
0.7
|
S6
|
A:FSO1546
|
2.1
|
5.2
|
0.3
|
SG
|
A:CYS308
|
2.2
|
4.8
|
1.0
|
S3
|
A:SF31545
|
2.3
|
5.0
|
0.7
|
O8
|
A:FSO1546
|
2.4
|
6.3
|
0.5
|
S5
|
A:FSO1546
|
2.5
|
3.0
|
0.3
|
FE1
|
A:SF31545
|
2.8
|
3.9
|
0.7
|
FE5
|
A:FSO1546
|
2.8
|
4.4
|
0.3
|
CB
|
A:CYS308
|
3.2
|
4.1
|
1.0
|
FE8
|
A:FSO1546
|
3.3
|
7.4
|
0.3
|
O
|
A:HOH2841
|
3.5
|
3.9
|
0.2
|
CD1
|
A:TRP288
|
3.5
|
4.4
|
1.0
|
N
|
A:CYS308
|
3.8
|
3.9
|
1.0
|
CG
|
A:TRP288
|
3.8
|
4.3
|
1.0
|
FE4
|
A:SF31545
|
3.8
|
5.8
|
0.7
|
NE1
|
A:TRP288
|
3.9
|
4.9
|
1.0
|
CA
|
A:CYS308
|
4.1
|
3.7
|
1.0
|
OE2
|
A:GLU487
|
4.2
|
8.3
|
0.3
|
ND2
|
A:ASN307
|
4.3
|
9.8
|
1.0
|
CB
|
A:TRP288
|
4.3
|
4.3
|
1.0
|
CG
|
A:GLU487
|
4.3
|
7.5
|
0.7
|
O9
|
A:FSO1546
|
4.4
|
4.5
|
0.5
|
OE2
|
A:GLU487
|
4.4
|
9.1
|
0.7
|
CD2
|
A:TRP288
|
4.4
|
4.3
|
1.0
|
O10
|
A:FSO1546
|
4.4
|
2.6
|
0.3
|
CE2
|
A:TRP288
|
4.4
|
4.1
|
1.0
|
C
|
A:ASN307
|
4.4
|
4.2
|
1.0
|
S2
|
A:SF31545
|
4.5
|
4.9
|
0.7
|
SG
|
A:CYS427
|
4.5
|
4.6
|
1.0
|
O
|
A:ASN307
|
4.7
|
4.4
|
1.0
|
CD
|
A:GLU487
|
4.7
|
8.7
|
0.7
|
CG
|
A:GLU487
|
4.7
|
4.8
|
0.3
|
CD2
|
A:TYR486
|
4.8
|
4.3
|
1.0
|
CG
|
A:ASN307
|
4.9
|
6.5
|
1.0
|
CD
|
A:GLU487
|
4.9
|
7.4
|
0.3
|
|
Iron binding site 7 out
of 24 in 1upx
Go back to
Iron Binding Sites List in 1upx
Iron binding site 7 out
of 24 in the The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1545
b:5.8
occ:0.65
|
FE4
|
A:SF31545
|
0.0
|
5.8
|
0.7
|
FE8
|
A:FSO1546
|
1.7
|
7.4
|
0.3
|
SG
|
A:CYS399
|
1.9
|
7.1
|
0.3
|
S7
|
A:FSO1546
|
2.0
|
8.1
|
0.3
|
S6
|
A:FSO1546
|
2.0
|
5.2
|
0.3
|
OE2
|
A:GLU487
|
2.1
|
9.1
|
0.7
|
S2
|
A:SF31545
|
2.3
|
4.9
|
0.7
|
SG
|
A:CYS399
|
2.3
|
4.4
|
0.7
|
S3
|
A:SF31545
|
2.3
|
5.0
|
0.7
|
CB
|
A:CYS399
|
2.4
|
6.0
|
0.3
|
FE1
|
A:SF31545
|
2.7
|
3.9
|
0.7
|
O10
|
A:FSO1546
|
2.7
|
2.6
|
0.3
|
O
|
A:HOH2841
|
3.0
|
3.9
|
0.2
|
FE5
|
A:FSO1546
|
3.0
|
4.4
|
0.3
|
CD
|
A:GLU487
|
3.2
|
8.7
|
0.7
|
O9
|
A:FSO1546
|
3.3
|
4.5
|
0.5
|
CB
|
A:CYS399
|
3.3
|
3.4
|
0.7
|
OE2
|
A:GLU487
|
3.5
|
8.3
|
0.3
|
CG
|
A:GLU487
|
3.6
|
7.5
|
0.7
|
FE6
|
A:FSO1546
|
3.6
|
4.5
|
0.3
|
CA
|
A:CYS399
|
3.7
|
6.0
|
0.3
|
O8
|
A:FSO1546
|
3.7
|
6.3
|
0.5
|
FE3
|
A:SF31545
|
3.8
|
6.7
|
0.7
|
FE7
|
A:SF31545
|
3.9
|
4.6
|
0.7
|
FE7
|
A:FSO1546
|
3.9
|
5.3
|
0.3
|
CA
|
A:CYS399
|
4.0
|
3.2
|
0.7
|
CG
|
A:GLU487
|
4.1
|
4.8
|
0.3
|
CD
|
A:GLU487
|
4.1
|
7.4
|
0.3
|
OE1
|
A:GLU487
|
4.3
|
9.1
|
0.7
|
SG
|
A:CYS427
|
4.3
|
4.6
|
1.0
|
S1
|
A:SF31545
|
4.4
|
5.7
|
0.7
|
N
|
A:CYS399
|
4.5
|
6.0
|
0.3
|
N
|
A:CYS399
|
4.6
|
3.5
|
0.7
|
C
|
A:CYS399
|
4.8
|
6.1
|
0.3
|
N
|
A:GLU487
|
4.8
|
5.4
|
0.7
|
S5
|
A:FSO1546
|
4.8
|
3.0
|
0.3
|
N
|
A:GLU487
|
4.8
|
4.9
|
0.3
|
SG
|
A:CYS452
|
4.9
|
5.0
|
1.0
|
CB
|
A:GLU487
|
5.0
|
6.3
|
0.7
|
CB
|
A:TYR486
|
5.0
|
4.2
|
1.0
|
O
|
A:GLY398
|
5.0
|
3.6
|
0.7
|
O
|
A:GLY398
|
5.0
|
5.9
|
0.3
|
|
Iron binding site 8 out
of 24 in 1upx
Go back to
Iron Binding Sites List in 1upx
Iron binding site 8 out
of 24 in the The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1545
b:4.6
occ:0.65
|
FE7
|
A:SF31545
|
0.0
|
4.6
|
0.7
|
FE7
|
A:FSO1546
|
0.0
|
5.3
|
0.3
|
OE2
|
A:GLU264
|
2.1
|
4.2
|
1.0
|
NE2
|
A:HIS240
|
2.1
|
4.7
|
1.0
|
O9
|
A:FSO1546
|
2.2
|
4.5
|
0.5
|
O10
|
A:FSO1546
|
2.3
|
2.6
|
0.3
|
S2
|
A:SF31545
|
2.3
|
4.9
|
0.7
|
SG
|
A:CYS452
|
2.4
|
5.0
|
1.0
|
CD
|
A:GLU264
|
3.1
|
3.6
|
1.0
|
CE1
|
A:HIS240
|
3.1
|
4.0
|
1.0
|
CD2
|
A:HIS240
|
3.1
|
4.1
|
1.0
|
CG
|
A:GLU264
|
3.3
|
3.9
|
1.0
|
CB
|
A:CYS452
|
3.3
|
3.9
|
1.0
|
O
|
A:HOH2841
|
3.4
|
3.9
|
0.2
|
FE8
|
A:FSO1546
|
3.7
|
7.4
|
0.3
|
FE5
|
A:FSO1546
|
3.8
|
4.4
|
0.3
|
FE1
|
A:SF31545
|
3.9
|
3.9
|
0.7
|
FE4
|
A:SF31545
|
3.9
|
5.8
|
0.7
|
N
|
A:CYS452
|
3.9
|
3.7
|
1.0
|
O8
|
A:FSO1546
|
4.1
|
6.3
|
0.5
|
CB
|
A:GLU264
|
4.2
|
3.0
|
1.0
|
OE1
|
A:GLU264
|
4.2
|
4.1
|
1.0
|
ND1
|
A:HIS240
|
4.2
|
4.2
|
1.0
|
CA
|
A:CYS452
|
4.3
|
3.5
|
1.0
|
CG
|
A:HIS240
|
4.3
|
4.7
|
1.0
|
OE2
|
A:GLU487
|
4.4
|
9.1
|
0.7
|
S1
|
A:SF31545
|
4.4
|
5.7
|
0.7
|
NZ
|
A:LYS489
|
4.5
|
7.2
|
1.0
|
SG
|
A:CYS399
|
4.6
|
7.1
|
0.3
|
S5
|
A:FSO1546
|
4.7
|
3.0
|
0.3
|
CD
|
A:LYS489
|
4.8
|
5.8
|
1.0
|
CA
|
A:GLY426
|
4.9
|
3.9
|
1.0
|
FE6
|
A:FSO1546
|
4.9
|
4.5
|
0.3
|
S6
|
A:FSO1546
|
5.0
|
5.2
|
0.3
|
S7
|
A:FSO1546
|
5.0
|
8.1
|
0.3
|
|
Iron binding site 9 out
of 24 in 1upx
Go back to
Iron Binding Sites List in 1upx
Iron binding site 9 out
of 24 in the The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1546
b:4.4
occ:0.35
|
FE5
|
A:FSO1546
|
0.0
|
4.4
|
0.3
|
FE1
|
A:SF31545
|
0.3
|
3.9
|
0.7
|
O10
|
A:FSO1546
|
2.1
|
2.6
|
0.3
|
S1
|
A:SF31545
|
2.1
|
5.7
|
0.7
|
S5
|
A:FSO1546
|
2.2
|
3.0
|
0.3
|
S2
|
A:SF31545
|
2.3
|
4.9
|
0.7
|
SG
|
A:CYS427
|
2.4
|
4.6
|
1.0
|
S6
|
A:FSO1546
|
2.4
|
5.2
|
0.3
|
S3
|
A:SF31545
|
2.5
|
5.0
|
0.7
|
FE6
|
A:FSO1546
|
2.7
|
4.5
|
0.3
|
FE3
|
A:SF31545
|
2.8
|
6.7
|
0.7
|
FE4
|
A:SF31545
|
3.0
|
5.8
|
0.7
|
CB
|
A:CYS427
|
3.3
|
4.4
|
1.0
|
FE8
|
A:FSO1546
|
3.5
|
7.4
|
0.3
|
O8
|
A:FSO1546
|
3.7
|
6.3
|
0.5
|
CG
|
A:GLU264
|
3.8
|
3.9
|
1.0
|
FE7
|
A:SF31545
|
3.8
|
4.6
|
0.7
|
FE7
|
A:FSO1546
|
3.8
|
5.3
|
0.3
|
CD1
|
A:TRP288
|
3.9
|
4.4
|
1.0
|
O
|
A:HOH2841
|
3.9
|
3.9
|
0.2
|
O9
|
A:FSO1546
|
4.1
|
4.5
|
0.5
|
N
|
A:CYS427
|
4.2
|
3.8
|
1.0
|
CB
|
A:CYS399
|
4.2
|
6.0
|
0.3
|
CA
|
A:CYS427
|
4.3
|
3.8
|
1.0
|
SG
|
A:CYS399
|
4.4
|
7.1
|
0.3
|
CD
|
A:GLU264
|
4.5
|
3.6
|
1.0
|
NE1
|
A:TRP288
|
4.5
|
4.9
|
1.0
|
OE2
|
A:GLU264
|
4.6
|
4.2
|
1.0
|
OE2
|
A:GLU487
|
4.6
|
9.1
|
0.7
|
CA
|
A:CYS399
|
4.6
|
6.0
|
0.3
|
OG
|
A:SER263
|
4.6
|
4.5
|
1.0
|
CB
|
A:CYS399
|
4.7
|
3.4
|
0.7
|
CA
|
A:CYS399
|
4.8
|
3.2
|
0.7
|
SG
|
A:CYS399
|
4.8
|
4.4
|
0.7
|
CG
|
A:TRP288
|
4.9
|
4.3
|
1.0
|
NE2
|
A:HIS240
|
4.9
|
4.7
|
1.0
|
S7
|
A:FSO1546
|
4.9
|
8.1
|
0.3
|
CE1
|
A:HIS240
|
4.9
|
4.0
|
1.0
|
N
|
A:ASP400
|
5.0
|
5.8
|
0.3
|
CB
|
A:GLU264
|
5.0
|
3.0
|
1.0
|
SG
|
A:CYS308
|
5.0
|
4.8
|
1.0
|
|
Iron binding site 10 out
of 24 in 1upx
Go back to
Iron Binding Sites List in 1upx
Iron binding site 10 out
of 24 in the The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of The Crystal Structure of the Hybrid Cluster Protein From Desulfovibrio Desulfuricans Containing Molecules in the Oxidized and Reduced States. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1546
b:4.5
occ:0.35
|
FE6
|
A:FSO1546
|
0.0
|
4.5
|
0.3
|
FE3
|
A:SF31545
|
0.5
|
6.7
|
0.7
|
O8
|
A:FSO1546
|
1.9
|
6.3
|
0.5
|
S1
|
A:SF31545
|
2.0
|
5.7
|
0.7
|
S6
|
A:FSO1546
|
2.2
|
5.2
|
0.3
|
S3
|
A:SF31545
|
2.4
|
5.0
|
0.7
|
SG
|
A:CYS308
|
2.4
|
4.8
|
1.0
|
S5
|
A:FSO1546
|
2.5
|
3.0
|
0.3
|
FE1
|
A:SF31545
|
2.7
|
3.9
|
0.7
|
FE5
|
A:FSO1546
|
2.7
|
4.4
|
0.3
|
FE8
|
A:FSO1546
|
3.0
|
7.4
|
0.3
|
O
|
A:HOH2841
|
3.0
|
3.9
|
0.2
|
CB
|
A:CYS308
|
3.5
|
4.1
|
1.0
|
FE4
|
A:SF31545
|
3.6
|
5.8
|
0.7
|
N
|
A:CYS308
|
3.8
|
3.9
|
1.0
|
OE2
|
A:GLU487
|
3.8
|
8.3
|
0.3
|
O9
|
A:FSO1546
|
3.9
|
4.5
|
0.5
|
CD1
|
A:TRP288
|
3.9
|
4.4
|
1.0
|
ND2
|
A:ASN307
|
3.9
|
9.8
|
1.0
|
OE2
|
A:GLU487
|
4.1
|
9.1
|
0.7
|
CG
|
A:GLU487
|
4.2
|
7.5
|
0.7
|
CA
|
A:CYS308
|
4.2
|
3.7
|
1.0
|
O10
|
A:FSO1546
|
4.2
|
2.6
|
0.3
|
S2
|
A:SF31545
|
4.2
|
4.9
|
0.7
|
C
|
A:ASN307
|
4.3
|
4.2
|
1.0
|
CG
|
A:TRP288
|
4.3
|
4.3
|
1.0
|
NE1
|
A:TRP288
|
4.4
|
4.9
|
1.0
|
CD
|
A:GLU487
|
4.4
|
8.7
|
0.7
|
O
|
A:ASN307
|
4.4
|
4.4
|
1.0
|
CG
|
A:GLU487
|
4.5
|
4.8
|
0.3
|
CG
|
A:ASN307
|
4.6
|
6.5
|
1.0
|
SG
|
A:CYS427
|
4.6
|
4.6
|
1.0
|
CD
|
A:GLU487
|
4.7
|
7.4
|
0.3
|
CE1
|
A:HIS240
|
4.7
|
4.0
|
1.0
|
CB
|
A:TRP288
|
4.7
|
4.3
|
1.0
|
FE7
|
A:SF31545
|
4.9
|
4.6
|
0.7
|
CD2
|
A:TRP288
|
4.9
|
4.3
|
1.0
|
FE7
|
A:FSO1546
|
4.9
|
5.3
|
0.3
|
CE2
|
A:TRP288
|
4.9
|
4.1
|
1.0
|
|
Reference:
S.Macedo,
D.Aragao,
E.P.Mitchell,
P.F.Lindley.
Structure of the Hybrid Cluster Protein (Hcp) From Desulfovibrio Desulfuricans Atcc 27774 Containing Molecules in the Oxidized and Reduced States Acta Crystallogr.,Sect.D V. 59 2065 2003.
ISSN: ISSN 0907-4449
PubMed: 14646063
DOI: 10.1107/S0907444903025861
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