Atomistry » Iron » PDB 1ubj-1uvy » 1uvh
Atomistry »
  Iron »
    PDB 1ubj-1uvy »
      1uvh »

Iron in PDB 1uvh: X-Ray Structure of Dps From Mycobacterium Smegmatis

Protein crystallography data

The structure of X-Ray Structure of Dps From Mycobacterium Smegmatis, PDB code: 1uvh was solved by A.Ilari, P.Ceci, E.Falvo, E.Chiancone, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40 / 2.8
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 124.300, 124.300, 304.650, 90.00, 90.00, 120.00
R / Rfree (%) 26 / 34

Iron Binding Sites:

The binding sites of Iron atom in the X-Ray Structure of Dps From Mycobacterium Smegmatis (pdb code 1uvh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the X-Ray Structure of Dps From Mycobacterium Smegmatis, PDB code: 1uvh:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1uvh

Go back to Iron Binding Sites List in 1uvh
Iron binding site 1 out of 4 in the X-Ray Structure of Dps From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Structure of Dps From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1162

b:56.1
occ:0.30
OE1 A:GLU70 1.2 58.4 1.0
OD2 A:ASP66 1.2 55.8 1.0
CD A:GLU70 2.4 57.9 1.0
CG A:ASP66 2.4 52.5 1.0
NE2 B:HIS39 2.8 63.7 1.0
CG A:GLU70 3.2 55.4 1.0
CE1 B:HIS39 3.2 63.8 1.0
CB A:ASP66 3.3 48.9 1.0
OE2 A:GLU70 3.4 56.1 1.0
OD1 A:ASP66 3.5 56.0 1.0
O B:HOH2002 3.5 53.7 1.0
NZ B:LYS36 3.8 40.5 1.0
CD2 B:HIS39 4.0 63.1 1.0
CA A:ASP66 4.2 48.0 1.0
CE3 B:TRP40 4.4 61.4 1.0
ND1 B:HIS39 4.4 62.5 1.0
NE2 B:HIS51 4.5 60.1 1.0
OD2 B:ASP55 4.5 52.8 1.0
CE B:LYS36 4.6 37.1 1.0
C A:ASP66 4.7 48.8 1.0
CB A:GLU70 4.7 53.5 1.0
O A:ASP66 4.7 48.4 1.0
CG B:HIS39 4.8 58.7 1.0

Iron binding site 2 out of 4 in 1uvh

Go back to Iron Binding Sites List in 1uvh
Iron binding site 2 out of 4 in the X-Ray Structure of Dps From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of X-Ray Structure of Dps From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1162

b:56.1
occ:0.30
OE1 B:GLU70 1.3 57.7 1.0
OD2 B:ASP66 1.4 52.9 1.0
NE2 A:HIS39 2.0 60.6 1.0
CD B:GLU70 2.4 58.5 1.0
CG B:ASP66 2.6 49.9 1.0
CE1 A:HIS39 2.7 60.4 1.0
CD2 A:HIS39 3.2 59.1 1.0
CG B:GLU70 3.2 55.3 1.0
OD1 B:ASP66 3.3 54.3 1.0
OE2 B:GLU70 3.5 58.0 1.0
CB B:ASP66 3.7 45.9 1.0
NZ A:LYS36 3.8 43.6 1.0
ND1 A:HIS39 3.9 56.9 1.0
CE3 A:TRP40 4.1 61.3 1.0
CG A:HIS39 4.2 56.1 1.0
NE2 A:HIS51 4.3 58.7 1.0
CA B:ASP66 4.4 44.7 1.0
O B:ASP66 4.6 45.0 1.0
OD2 A:ASP55 4.7 56.9 1.0
CB B:GLU70 4.7 53.0 1.0
CZ3 A:TRP40 4.8 62.5 1.0
C B:ASP66 4.8 45.6 1.0
CB A:TRP40 4.9 58.6 1.0
OD1 A:ASP55 4.9 52.0 1.0
CE A:LYS36 5.0 42.8 1.0

Iron binding site 3 out of 4 in 1uvh

Go back to Iron Binding Sites List in 1uvh
Iron binding site 3 out of 4 in the X-Ray Structure of Dps From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of X-Ray Structure of Dps From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1162

b:55.6
occ:0.30
OE1 C:GLU70 1.2 58.5 1.0
OD2 C:ASP66 1.3 55.0 1.0
CD C:GLU70 2.3 57.1 1.0
CG C:ASP66 2.5 53.4 1.0
OD1 C:ASP66 3.1 60.0 1.0
NE2 D:HIS39 3.1 60.6 1.0
CG C:GLU70 3.2 54.1 1.0
OE2 C:GLU70 3.2 57.5 1.0
CE1 D:HIS39 3.4 60.7 1.0
CB C:ASP66 3.7 49.1 1.0
CD2 D:HIS39 4.2 60.9 1.0
CE1 D:HIS51 4.3 57.6 1.0
NE2 D:HIS51 4.3 57.3 1.0
ND1 D:HIS39 4.5 59.9 1.0
CA C:ASP66 4.5 48.3 1.0
CE3 D:TRP40 4.5 60.1 1.0
O C:ASP66 4.6 49.0 1.0
CB C:GLU70 4.6 52.5 1.0
C C:ASP66 4.8 48.9 1.0
CG D:HIS39 4.9 57.1 1.0

Iron binding site 4 out of 4 in 1uvh

Go back to Iron Binding Sites List in 1uvh
Iron binding site 4 out of 4 in the X-Ray Structure of Dps From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of X-Ray Structure of Dps From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe1162

b:55.8
occ:0.30
OE1 D:GLU70 1.3 59.0 1.0
OD2 D:ASP66 1.3 55.1 1.0
CD D:GLU70 2.4 60.4 1.0
CG D:ASP66 2.5 50.1 1.0
NE2 C:HIS39 3.0 57.6 1.0
CG D:GLU70 3.3 56.7 1.0
OE2 D:GLU70 3.4 60.6 1.0
CB D:ASP66 3.4 46.3 1.0
OD1 D:ASP66 3.5 52.1 1.0
CE1 C:HIS39 3.8 56.2 1.0
NZ C:LYS36 3.9 38.3 1.0
CD2 C:HIS39 4.0 56.8 1.0
CA D:ASP66 4.3 45.3 1.0
O D:ASP66 4.5 46.2 1.0
CE C:LYS36 4.6 35.4 1.0
CE1 C:HIS51 4.6 61.2 1.0
C D:ASP66 4.6 46.6 1.0
OD2 C:ASP55 4.6 51.4 1.0
CE3 C:TRP40 4.6 62.4 1.0
CB D:GLU70 4.7 53.7 1.0
NE2 C:HIS51 4.9 60.0 1.0

Reference:

P.Ceci, A.Ilari, E.Falvo, L.Giangiacomo, E.Chiancone. Reassessment of Protein Stability, Dna Binding, and Protection of Mycobacterium Smegmatis Dps. J.Biol.Chem. V. 280 34776 2005.
ISSN: ISSN 0021-9258
PubMed: 16030020
DOI: 10.1074/JBC.M502343200
Page generated: Sat Aug 3 16:00:01 2024

Last articles

Cl in 3P69
Cl in 3P72
Cl in 3P6R
Cl in 3P6Q
Cl in 3P4V
Cl in 3P65
Cl in 3P4Z
Cl in 3P64
Cl in 3P5O
Cl in 3P4X
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy