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Iron in PDB 1uzw: Isopenicillin N Synthase with L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline

Enzymatic activity of Isopenicillin N Synthase with L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline

All present enzymatic activity of Isopenicillin N Synthase with L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline:
1.21.3.1;

Protein crystallography data

The structure of Isopenicillin N Synthase with L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline, PDB code: 1uzw was solved by A.R.Grummitt, P.J.Rutledge, I.J.Clifton, J.E.Baldwin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 57.74 / 1.3
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.228, 70.595, 100.639, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 19.4

Iron Binding Sites:

The binding sites of Iron atom in the Isopenicillin N Synthase with L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline (pdb code 1uzw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Isopenicillin N Synthase with L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline, PDB code: 1uzw:

Iron binding site 1 out of 1 in 1uzw

Go back to Iron Binding Sites List in 1uzw
Iron binding site 1 out of 1 in the Isopenicillin N Synthase with L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Isopenicillin N Synthase with L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1332

b:9.2
occ:1.00
O A:HOH2260 1.7 11.9 1.0
OD1 A:ASP216 2.0 9.6 1.0
NE2 A:HIS270 2.0 8.3 1.0
NE2 A:HIS214 2.3 5.1 1.0
O A:HOH2255 2.3 10.5 1.0
S A:CDH1333 2.4 4.8 0.3
S A:CDH1333 2.4 26.6 0.7
CG A:ASP216 2.9 7.5 1.0
CE1 A:HIS270 2.9 6.6 1.0
CD2 A:HIS270 3.1 6.9 1.0
OD2 A:ASP216 3.2 7.4 1.0
CD2 A:HIS214 3.2 7.0 1.0
CE1 A:HIS214 3.3 8.8 1.0
C16 A:CDH1333 3.6 7.8 0.3
C16 A:CDH1333 3.6 32.2 0.7
C33 A:CDH1333 3.9 8.8 0.3
ND1 A:HIS270 4.1 6.9 1.0
O A:HOH2291 4.1 17.3 1.0
CG A:HIS270 4.2 6.5 1.0
CB A:ASP216 4.3 6.8 1.0
CG A:HIS214 4.4 7.2 1.0
ND1 A:HIS214 4.4 8.4 1.0
C33 A:CDH1333 4.4 41.2 0.7
N29 A:CDH1333 4.6 38.8 0.7
C32 A:CDH1333 4.6 12.8 0.3
CA A:ASP216 4.7 7.4 1.0
C32 A:CDH1333 4.8 42.3 0.7
N A:ASP216 4.8 6.3 1.0
C12 A:CDH1333 4.9 7.4 0.3
N29 A:CDH1333 4.9 7.8 0.3
O A:HOH2261 5.0 19.3 1.0

Reference:

A.R.Grummitt, P.J.Rutledge, I.J.Clifton, J.E.Baldwin. Active Site Mediated Elimination of Hydrogen Fluoride From A Fluorinated Substrate Analogue By Isopenicillin N Synthase Biochem.J. V. 382 659 2004.
ISSN: ISSN 0264-6021
PubMed: 15175003
DOI: 10.1042/BJ20040529
Page generated: Sun Dec 13 14:33:57 2020

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