Iron in PDB 1vck: Crystal Structure of Ferredoxin Component of Carbazole 1,9A- Dioxygenase of Pseudomonas Resinovorans Strain CA10

The structure of Crystal Structure of Ferredoxin Component of Carbazole 1,9A- Dioxygenase of Pseudomonas Resinovorans Strain CA10, PDB code: 1vck was solved by J.-W.Nam, H.Noguchi, Z.Fujiomoto, H.Mizuno, S.Fushinobu, N.Kobashi, K.Iwata, T.Yoshida, H.Habe, H.Yamane, T.Omori, H.Nojiri, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.63 / 1.90
Space group	P 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	98.281, 98.281, 98.281, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 23.6

The binding sites of Iron atom in the Crystal Structure of Ferredoxin Component of Carbazole 1,9A- Dioxygenase of Pseudomonas Resinovorans Strain CA10 (pdb code 1vck). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Crystal Structure of Ferredoxin Component of Carbazole 1,9A- Dioxygenase of Pseudomonas Resinovorans Strain CA10, PDB code: 1vck:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in the Crystal Structure of Ferredoxin Component of Carbazole 1,9A- Dioxygenase of Pseudomonas Resinovorans Strain CA10


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Ferredoxin Component of Carbazole 1,9A- Dioxygenase of Pseudomonas Resinovorans Strain CA10 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe211 b:24.9 occ:1.00 OE1 A:GLU55 2.0 18.1 1.0 S A:H2S212 2.8 47.9 1.0 CD A:GLU55 3.1 20.8 1.0 OE2 A:GLU55 3.5 21.6 1.0 CG A:GLU55 4.4 22.2 1.0 O A:HOH329 4.5 42.4 0.3 O A:HOH265 4.6 48.3 1.0 CB A:GLU55 4.6 21.8 1.0 O A:HOH348 4.7 47.5 1.0 CA A:GLU55 4.8 20.3 1.0 O A:GLU55 4.9 22.0 1.0

Iron binding site 2 out of 3 in the Crystal Structure of Ferredoxin Component of Carbazole 1,9A- Dioxygenase of Pseudomonas Resinovorans Strain CA10


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Ferredoxin Component of Carbazole 1,9A- Dioxygenase of Pseudomonas Resinovorans Strain CA10 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:18.1 occ:1.00 FE1 A:FES201 0.0 18.1 1.0 S2 A:FES201 2.2 17.4 1.0 SG A:CYS65 2.3 17.9 1.0 S1 A:FES201 2.3 17.8 1.0 SG A:CYS46 2.3 17.0 1.0 FE2 A:FES201 2.7 18.9 1.0 CB A:CYS65 3.2 16.7 1.0 CB A:CYS46 3.3 15.9 1.0 CB A:HIS48 4.1 17.3 1.0 O A:PHE67 4.3 16.9 1.0 ND1 A:HIS48 4.4 19.8 1.0 CB A:ALA51 4.4 16.8 1.0 ND1 A:HIS68 4.5 20.4 1.0 N A:GLY49 4.6 19.9 1.0 CA A:CYS65 4.7 18.4 1.0 CA A:CYS46 4.7 16.6 1.0 CG A:HIS48 4.7 20.4 1.0 CB A:PHE67 4.7 16.4 1.0 SG A:CYS84 4.8 22.4 1.0 N A:HIS48 4.8 17.6 1.0 CA A:HIS48 4.8 17.9 1.0 C A:HIS48 4.9 19.2 1.0 C A:PHE67 4.9 18.7 1.0 N A:PHE67 4.9 16.7 1.0

Iron binding site 3 out of 3 in the Crystal Structure of Ferredoxin Component of Carbazole 1,9A- Dioxygenase of Pseudomonas Resinovorans Strain CA10


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Ferredoxin Component of Carbazole 1,9A- Dioxygenase of Pseudomonas Resinovorans Strain CA10 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:18.9 occ:1.00 FE2 A:FES201 0.0 18.9 1.0 ND1 A:HIS48 2.1 19.8 1.0 ND1 A:HIS68 2.2 20.4 1.0 S2 A:FES201 2.2 17.4 1.0 S1 A:FES201 2.2 17.8 1.0 FE1 A:FES201 2.7 18.1 1.0 CE1 A:HIS68 3.0 21.6 1.0 CE1 A:HIS48 3.1 20.3 1.0 CG A:HIS48 3.1 20.4 1.0 CG A:HIS68 3.3 22.1 1.0 CB A:HIS48 3.4 17.3 1.0 CB A:HIS68 3.7 20.0 1.0 NE2 A:HIS68 4.2 22.9 1.0 NE2 A:HIS48 4.2 21.3 1.0 C A:HIS48 4.2 19.2 1.0 CD2 A:HIS48 4.2 19.9 1.0 O A:PHE67 4.3 16.9 1.0 O A:HOH229 4.3 26.8 1.0 O A:HIS48 4.3 18.7 1.0 CD2 A:HIS68 4.3 21.5 1.0 SG A:CYS46 4.4 17.0 1.0 CB A:PHE67 4.4 16.4 1.0 CA A:HIS48 4.5 17.9 1.0 SG A:CYS65 4.5 17.9 1.0 CG A:PRO83 4.5 20.8 1.0 C A:PHE67 4.5 18.7 1.0 N A:GLY49 4.5 19.9 1.0 N A:HIS68 4.9 18.4 1.0 CA A:HIS68 4.9 19.3 1.0

J.-W.Nam, H.Noguchi, Z.Fujiomoto, H.Mizuno, Y.Ashikawa, M.Abo, S.Fushinobu, N.Kobashi, T.Wakagi, K.Iwata, T.Yoshida, H.Habe, H.Yamane, T.Omori, H.Nojiri. Crystal Structure of the Ferredoxin Component of Carbazole 1,9A-Dioxygenase of Pseudomonas Resinovorans Strain CA10, A Novel Rieske Non-Heme Iron Oxygenase System Proteins V. 58 779 2005.
ISSN: ISSN 0887-3585
PubMed: 15645447
DOI: 10.1002/PROT.20374