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Iron in PDB 1vcx: Neutron Crystal Structure of the Wild Type Rubredoxin From Pyrococcus Furiosus at 1.5A Resolution

Iron Binding Sites:

The binding sites of Iron atom in the Neutron Crystal Structure of the Wild Type Rubredoxin From Pyrococcus Furiosus at 1.5A Resolution (pdb code 1vcx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Neutron Crystal Structure of the Wild Type Rubredoxin From Pyrococcus Furiosus at 1.5A Resolution, PDB code: 1vcx:

Iron binding site 1 out of 1 in 1vcx

Go back to Iron Binding Sites List in 1vcx
Iron binding site 1 out of 1 in the Neutron Crystal Structure of the Wild Type Rubredoxin From Pyrococcus Furiosus at 1.5A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Neutron Crystal Structure of the Wild Type Rubredoxin From Pyrococcus Furiosus at 1.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe54

b:2.5
occ:1.00
SG A:CYS5 2.2 3.8 1.0
SG A:CYS38 2.2 4.4 1.0
SG A:CYS41 2.2 1.9 1.0
SG A:CYS8 2.2 4.4 1.0
D A:CYS41 3.1 5.3 0.8
H A:CYS41 3.1 5.3 0.2
HB3 A:CYS41 3.2 2.7 1.0
HB3 A:CYS5 3.2 2.1 1.0
D A:CYS8 3.2 6.4 0.8
H A:CYS8 3.2 6.4 0.2
CB A:CYS38 3.2 3.4 1.0
CB A:CYS5 3.2 3.2 1.0
HB3 A:CYS8 3.3 6.2 1.0
HB3 A:CYS38 3.3 5.8 1.0
HB2 A:CYS38 3.3 3.9 1.0
CB A:CYS41 3.3 2.9 1.0
CB A:CYS8 3.3 6.0 1.0
HB A:ILE7 3.4 7.5 1.0
HB2 A:CYS5 3.5 1.8 1.0
HB A:ILE40 3.5 10.3 1.0
HB3 A:TYR10 3.5 4.6 1.0
N A:CYS8 3.8 6.4 1.0
N A:CYS41 3.8 5.3 1.0
HB1 A:ALA43 3.9 5.2 1.0
H A:TYR10 4.0 3.4 0.5
D A:TYR10 4.0 3.4 0.5
D A:ALA43 4.0 3.7 0.1
H A:ALA43 4.0 3.7 0.9
CA A:CYS8 4.1 5.7 1.0
CA A:CYS41 4.1 2.6 1.0
HB2 A:ALA43 4.1 4.9 1.0
HB2 A:CYS41 4.2 4.4 1.0
HB2 A:CYS8 4.2 7.6 1.0
HB2 A:TYR10 4.4 3.6 1.0
CB A:TYR10 4.5 2.0 1.0
H A:ILE40 4.5 6.1 0.1
D A:ILE40 4.5 6.1 0.9
CB A:ILE7 4.5 9.6 1.0
HG21 A:ILE7 4.5 10.0 1.0
CB A:ALA43 4.6 4.2 1.0
CB A:ILE40 4.6 9.7 1.0
H A:GLY42 4.6 4.6 0.1
D A:GLY42 4.6 4.6 0.9
D A:ILE7 4.6 7.9 0.9
H A:ILE7 4.6 7.9 0.1
H A:GLY9 4.6 5.4 0.1
D A:GLY9 4.6 5.4 0.9
HZ A:PHE48 4.6 5.3 1.0
CA A:CYS5 4.6 1.6 1.0
CA A:CYS38 4.7 3.3 1.0
C A:CYS8 4.8 5.7 1.0
C A:ILE7 4.8 6.5 1.0
C A:CYS41 4.8 4.0 1.0
C A:ILE40 4.8 7.1 1.0
N A:TYR10 4.9 3.4 1.0
N A:GLY42 4.9 4.6 1.0
HD2 A:TYR10 4.9 2.3 1.0
N A:GLY9 4.9 5.4 1.0
N A:ALA43 4.9 3.7 1.0
HA A:CYS8 5.0 4.9 1.0
O A:CYS5 5.0 3.8 1.0
HA A:CYS41 5.0 4.5 1.0
HG21 A:ILE40 5.0 9.7 1.0

Reference:

K.Kurihara, I.Tanaka, T.Chatake, M.W.W.Adams, F.E.Jenney Jr., N.Moiseeva, R.Bau, N.Niimura. Neutron Crystallographic Study on Rubredoxin From Pyrococcus Furiosus By Bix-3, A Single-Crystal Diffractometer For Biomacromolecules Proc.Natl.Acad.Sci.Usa V. 101 11215 2004.
ISSN: ISSN 0027-8424
PubMed: 15272083
DOI: 10.1073/PNAS.0403807101
Page generated: Wed Jul 16 21:38:11 2025

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