Iron in PDB 1vk2: Crystal Structure of Uracil-Dna Glycosylase (TM0511) From Thermotoga Maritima at 1.90 A Resolution

The structure of Crystal Structure of Uracil-Dna Glycosylase (TM0511) From Thermotoga Maritima at 1.90 A Resolution, PDB code: 1vk2 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.09 / 1.90
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	61.049, 61.049, 127.500, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 20.6

The binding sites of Iron atom in the Crystal Structure of Uracil-Dna Glycosylase (TM0511) From Thermotoga Maritima at 1.90 A Resolution (pdb code 1vk2). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Uracil-Dna Glycosylase (TM0511) From Thermotoga Maritima at 1.90 A Resolution, PDB code: 1vk2:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of Uracil-Dna Glycosylase (TM0511) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Uracil-Dna Glycosylase (TM0511) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:20.4 occ:0.80 FE1 A:SF4201 0.0 20.4 0.8 SG A:CYS105 2.2 24.1 1.0 S4 A:SF4201 2.3 20.5 0.8 S2 A:SF4201 2.3 21.7 0.8 S3 A:SF4201 2.4 22.4 0.8 FE2 A:SF4201 2.7 20.5 0.8 FE4 A:SF4201 2.7 20.0 0.8 FE3 A:SF4201 2.7 19.3 0.8 CB A:CYS105 3.1 20.6 1.0 CA A:CYS105 3.7 22.7 1.0 S1 A:SF4201 3.9 20.8 0.8 CB A:LYS88 4.2 24.4 1.0 N A:LYS88 4.2 18.8 1.0 CD2 A:PHE108 4.5 24.9 1.0 N A:CYS105 4.5 22.6 1.0 CE2 A:PHE108 4.6 23.0 1.0 SG A:CYS18 4.7 25.8 1.0 SG A:CYS21 4.7 24.1 1.0 SG A:CYS89 4.8 26.1 1.0 O A:HOH397 4.8 55.5 1.0 CA A:LYS88 4.8 21.7 1.0 C A:CYS105 4.9 24.8 1.0 N A:CYS89 4.9 23.7 1.0 O A:CYS105 5.0 25.1 1.0

Iron binding site 2 out of 4 in the Crystal Structure of Uracil-Dna Glycosylase (TM0511) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Uracil-Dna Glycosylase (TM0511) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:20.5 occ:0.80 FE2 A:SF4201 0.0 20.5 0.8 S1 A:SF4201 2.3 20.8 0.8 S4 A:SF4201 2.3 20.5 0.8 S3 A:SF4201 2.3 22.4 0.8 SG A:CYS18 2.4 25.8 1.0 FE1 A:SF4201 2.7 20.4 0.8 FE4 A:SF4201 2.7 20.0 0.8 FE3 A:SF4201 2.7 19.3 0.8 CB A:CYS18 3.2 27.3 1.0 O A:HOH397 3.9 55.5 1.0 S2 A:SF4201 3.9 21.7 0.8 N A:ALA20 4.1 28.0 1.0 O A:CYS18 4.2 27.6 1.0 C A:CYS18 4.2 26.9 1.0 CA A:CYS18 4.3 26.3 1.0 CE2 A:PHE108 4.4 23.0 1.0 CB A:ALA20 4.5 29.3 1.0 N A:CYS21 4.5 30.2 1.0 N A:THR19 4.6 28.4 1.0 O A:HOH334 4.6 38.4 1.0 SG A:CYS105 4.7 24.1 1.0 CA A:ALA20 4.7 30.1 1.0 SG A:CYS21 4.8 24.1 1.0 C A:THR19 4.9 30.3 1.0 SG A:CYS89 4.9 26.1 1.0 CA A:THR19 5.0 29.6 1.0

Iron binding site 3 out of 4 in the Crystal Structure of Uracil-Dna Glycosylase (TM0511) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Uracil-Dna Glycosylase (TM0511) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:19.3 occ:0.80 FE3 A:SF4201 0.0 19.3 0.8 S4 A:SF4201 2.3 20.5 0.8 S2 A:SF4201 2.3 21.7 0.8 SG A:CYS89 2.3 26.1 1.0 S1 A:SF4201 2.4 20.8 0.8 FE2 A:SF4201 2.7 20.5 0.8 FE1 A:SF4201 2.7 20.4 0.8 FE4 A:SF4201 2.7 20.0 0.8 CB A:CYS89 3.3 26.3 1.0 O A:HOH334 4.0 38.4 1.0 S3 A:SF4201 4.0 22.4 0.8 N A:CYS89 4.0 23.7 1.0 CA A:CYS89 4.3 21.6 1.0 N A:HIS24 4.5 25.9 1.0 CB A:LYS88 4.5 24.4 1.0 CB A:LEU23 4.6 24.5 1.0 C A:LYS88 4.6 23.1 1.0 SG A:CYS21 4.6 24.1 1.0 SG A:CYS105 4.7 24.1 1.0 CA A:HIS24 4.7 27.6 1.0 CB A:HIS24 4.8 31.1 1.0 C A:LEU23 4.9 25.2 1.0 O A:CYS18 4.9 27.6 1.0 SG A:CYS18 4.9 25.8 1.0 CB A:CYS18 4.9 27.3 1.0 CA A:LYS88 5.0 21.7 1.0 N A:LYS88 5.0 18.8 1.0

Iron binding site 4 out of 4 in the Crystal Structure of Uracil-Dna Glycosylase (TM0511) From Thermotoga Maritima at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Uracil-Dna Glycosylase (TM0511) From Thermotoga Maritima at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:20.0 occ:0.80 FE4 A:SF4201 0.0 20.0 0.8 SG A:CYS21 2.3 24.1 1.0 S3 A:SF4201 2.3 22.4 0.8 S1 A:SF4201 2.3 20.8 0.8 S2 A:SF4201 2.3 21.7 0.8 FE2 A:SF4201 2.7 20.5 0.8 FE1 A:SF4201 2.7 20.4 0.8 FE3 A:SF4201 2.7 19.3 0.8 CB A:CYS21 3.3 28.9 1.0 N A:CYS21 3.8 30.2 1.0 S4 A:SF4201 3.9 20.5 0.8 CA A:CYS21 4.0 29.5 1.0 CB A:LEU23 4.3 24.5 1.0 O A:CYS21 4.3 27.3 1.0 C A:CYS21 4.3 29.0 1.0 CB A:CYS105 4.7 20.6 1.0 SG A:CYS105 4.7 24.1 1.0 C A:ALA20 4.7 31.7 1.0 N A:LEU23 4.8 25.3 1.0 N A:HIS24 4.8 25.9 1.0 SG A:CYS89 4.8 26.1 1.0 CG A:LEU23 4.8 20.9 1.0 SG A:CYS18 4.9 25.8 1.0 CD1 A:LEU23 4.9 25.3 1.0 CA A:LEU23 5.0 25.0 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.