Atomistry » Iron » PDB 1uwm-1vme » 1vlg
Atomistry »
  Iron »
    PDB 1uwm-1vme »
      1vlg »

Iron in PDB 1vlg: Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution

Protein crystallography data

The structure of Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution, PDB code: 1vlg was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 87.73 / 2.00
Space group H 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 175.634, 175.634, 354.843, 90.00, 90.00, 120.00
R / Rfree (%) 17.8 / 21.8

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution (pdb code 1vlg). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution, PDB code: 1vlg:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 1vlg

Go back to Iron Binding Sites List in 1vlg
Iron binding site 1 out of 8 in the Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe200

b:38.5
occ:0.87
 OE1 A:GLU52 2.0 34.0 1.0
OE1 A:GLU19 2.3 31.1 1.0
O A:HOH254 2.3 30.6 1.0
ND1 A:HIS55 2.4 31.9 1.0
O A:HOH282 2.4 29.2 1.0
O A:HOH283 2.7 38.0 1.0
CD A:GLU52 3.1 34.1 1.0
CD A:GLU19 3.2 38.4 1.0
CE1 A:HIS55 3.2 27.2 1.0
OE2 A:GLU19 3.4 36.5 1.0
CG A:HIS55 3.5 24.9 1.0
OE2 A:GLU52 3.5 41.6 1.0
CB A:HIS55 3.8 22.8 1.0
OE1 A:GLN129 3.9 27.2 1.0
NE2 A:HIS55 4.4 23.1 1.0
CG A:GLU52 4.4 26.6 1.0
CG1 A:VAL99 4.4 29.8 1.0
OE1 A:GLU96 4.5 37.8 1.0
CG A:GLU19 4.5 26.1 1.0
CD2 A:HIS55 4.5 22.3 1.0
CA A:GLU52 4.6 24.4 1.0
OE2 A:GLU96 4.6 39.5 1.0
CB A:GLU52 4.7 26.6 1.0
CB A:GLU19 4.9 20.9 1.0
O A:GLU52 5.0 21.5 1.0
CD A:GLN129 5.0 27.2 1.0

Iron binding site 2 out of 8 in 1vlg

Go back to Iron Binding Sites List in 1vlg
Iron binding site 2 out of 8 in the Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe200

b:39.5
occ:0.87
 OE1 B:GLU52 2.0 33.9 1.0
OE1 B:GLU19 2.2 30.6 1.0
ND1 B:HIS55 2.4 28.6 1.0
O B:HOH286 2.4 31.9 1.0
O B:HOH308 2.4 27.4 1.0
O B:HOH309 2.6 32.4 1.0
CD B:GLU52 3.0 29.7 1.0
CD B:GLU19 3.1 36.9 1.0
CE1 B:HIS55 3.2 32.4 1.0
OE2 B:GLU52 3.4 32.9 1.0
OE2 B:GLU19 3.4 35.5 1.0
CG B:HIS55 3.5 24.5 1.0
CB B:HIS55 3.8 24.0 1.0
OE1 B:GLN129 4.1 26.4 1.0
CG B:GLU52 4.3 25.4 1.0
NE2 B:HIS55 4.4 27.7 1.0
CG1 B:VAL99 4.5 34.3 1.0
CG B:GLU19 4.5 24.1 1.0
CA B:GLU52 4.5 21.9 1.0
CD2 B:HIS55 4.5 19.0 1.0
CB B:GLU52 4.5 21.5 1.0
OE1 B:GLU96 4.6 34.8 1.0
OE2 B:GLU96 4.7 37.4 1.0
CB B:GLU19 4.8 21.8 1.0
OG B:SER22 4.9 28.3 1.0
CB B:SER22 5.0 21.5 1.0

Iron binding site 3 out of 8 in 1vlg

Go back to Iron Binding Sites List in 1vlg
Iron binding site 3 out of 8 in the Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe200

b:40.5
occ:0.90
 OE1 C:GLU52 2.0 30.6 1.0
OE1 C:GLU19 2.2 29.3 1.0
O C:HOH270 2.3 28.9 1.0
ND1 C:HIS55 2.4 29.7 1.0
O C:HOH264 2.7 40.8 1.0
O C:HOH263 2.7 38.6 1.0
CD C:GLU52 3.0 30.2 1.0
CD C:GLU19 3.1 30.9 1.0
CE1 C:HIS55 3.3 31.8 1.0
OE2 C:GLU52 3.3 36.1 1.0
OE2 C:GLU19 3.4 39.7 1.0
CG C:HIS55 3.5 26.1 1.0
CB C:HIS55 3.8 25.6 1.0
OE1 C:GLN129 4.1 26.9 1.0
CG C:GLU52 4.3 28.5 1.0
NE2 C:HIS55 4.5 26.4 1.0
CG1 C:VAL99 4.5 24.4 1.0
CG C:GLU19 4.5 24.4 1.0
OE1 C:GLU96 4.5 40.8 1.0
CA C:GLU52 4.5 21.1 1.0
CD2 C:HIS55 4.6 25.2 1.0
OE2 C:GLU96 4.6 37.4 1.0
CB C:GLU52 4.6 22.7 1.0
CB C:GLU19 4.9 21.5 1.0
O C:GLU52 4.9 19.2 1.0
OG C:SER22 5.0 26.0 1.0

Iron binding site 4 out of 8 in 1vlg

Go back to Iron Binding Sites List in 1vlg
Iron binding site 4 out of 8 in the Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe200

b:39.4
occ:0.86
 OE1 D:GLU52 2.0 28.2 1.0
O D:HOH260 2.3 30.0 1.0
OE1 D:GLU19 2.3 32.2 1.0
ND1 D:HIS55 2.4 32.0 1.0
O D:HOH262 2.4 30.4 1.0
O D:HOH247 2.8 36.6 1.0
CD D:GLU52 3.0 29.9 1.0
CE1 D:HIS55 3.2 25.4 1.0
CD D:GLU19 3.2 34.0 1.0
OE2 D:GLU52 3.4 34.1 1.0
CG D:HIS55 3.5 25.7 1.0
OE2 D:GLU19 3.5 34.3 1.0
CB D:HIS55 3.8 22.8 1.0
OE1 D:GLN129 4.1 29.2 1.0
CG D:GLU52 4.3 28.6 1.0
NE2 D:HIS55 4.4 26.8 1.0
CA D:GLU52 4.5 21.2 1.0
CG1 D:VAL99 4.5 26.6 1.0
CD2 D:HIS55 4.5 29.1 1.0
CB D:GLU52 4.6 22.8 1.0
CG D:GLU19 4.6 24.7 1.0
OE1 D:GLU96 4.7 38.2 1.0
OE2 D:GLU96 4.8 38.4 1.0
CB D:GLU19 4.9 20.5 1.0
O D:GLU52 5.0 24.1 1.0
OG D:SER22 5.0 27.0 1.0

Iron binding site 5 out of 8 in 1vlg

Go back to Iron Binding Sites List in 1vlg
Iron binding site 5 out of 8 in the Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe200

b:50.2
occ:0.77
 OE1 E:GLU52 2.0 42.2 1.0
OE1 E:GLU19 2.3 35.4 1.0
O E:HOH297 2.4 28.2 1.0
O E:HOH320 2.6 33.2 1.0
ND1 E:HIS55 2.6 39.4 1.0
CD E:GLU52 3.0 32.9 1.0
CD E:GLU19 3.2 34.3 1.0
CE1 E:HIS55 3.4 32.5 1.0
OE2 E:GLU52 3.4 36.6 1.0
OE2 E:GLU19 3.5 34.2 1.0
CG E:HIS55 3.6 27.8 1.0
CB E:HIS55 3.9 21.6 1.0
OE1 E:GLN129 4.0 26.6 1.0
O E:HOH298 4.3 30.8 1.0
CG1 E:VAL99 4.3 27.4 1.0
CG E:GLU52 4.4 30.1 1.0
CG E:GLU19 4.6 25.4 1.0
NE2 E:HIS55 4.6 33.0 1.0
CA E:GLU52 4.6 20.3 1.0
CB E:GLU52 4.7 22.2 1.0
CD2 E:HIS55 4.7 25.8 1.0
OE1 E:GLU132 4.8 62.3 1.0
OE1 E:GLU96 4.9 34.6 1.0
CB E:GLU19 4.9 23.9 1.0
CD E:GLN129 5.0 28.4 1.0
OE2 E:GLU96 5.0 45.9 1.0

Iron binding site 6 out of 8 in 1vlg

Go back to Iron Binding Sites List in 1vlg
Iron binding site 6 out of 8 in the Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe200

b:36.5
occ:0.90
 OE1 F:GLU52 2.0 33.5 1.0
OE1 F:GLU19 2.2 27.3 1.0
O F:HOH241 2.2 36.6 1.0
O F:HOH220 2.3 24.7 1.0
ND1 F:HIS55 2.4 26.9 1.0
O F:HOH259 2.7 34.2 1.0
CD F:GLU52 3.0 25.2 1.0
CD F:GLU19 3.2 33.7 1.0
CE1 F:HIS55 3.3 22.0 1.0
OE2 F:GLU52 3.3 27.7 1.0
OE2 F:GLU19 3.5 32.5 1.0
CG F:HIS55 3.5 22.7 1.0
CB F:HIS55 3.9 24.4 1.0
OE1 F:GLN129 4.1 26.3 1.0
CG F:GLU52 4.3 26.1 1.0
CG1 F:VAL99 4.4 23.5 1.0
NE2 F:HIS55 4.4 27.2 1.0
OE1 F:GLU96 4.5 35.8 1.0
CG F:GLU19 4.5 24.6 1.0
CA F:GLU52 4.5 20.6 1.0
OE2 F:GLU96 4.5 40.7 1.0
CD2 F:HIS55 4.6 22.1 1.0
CB F:GLU52 4.6 22.5 1.0
CB F:GLU19 4.8 19.4 1.0
CD F:GLU96 5.0 34.2 1.0
CB F:SER22 5.0 19.4 1.0

Iron binding site 7 out of 8 in 1vlg

Go back to Iron Binding Sites List in 1vlg
Iron binding site 7 out of 8 in the Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe200

b:42.5
occ:0.87
 OE1 G:GLU52 2.0 32.7 1.0
OE1 G:GLU19 2.2 31.8 1.0
O G:HOH238 2.4 31.1 1.0
ND1 G:HIS55 2.4 31.6 1.0
CD G:GLU52 3.0 36.2 1.0
CD G:GLU19 3.2 32.5 1.0
CE1 G:HIS55 3.2 28.6 1.0
OE2 G:GLU52 3.4 39.5 1.0
OE2 G:GLU19 3.4 39.1 1.0
CG G:HIS55 3.6 24.9 1.0
CB G:HIS55 4.0 22.3 1.0
OE1 G:GLN129 4.0 28.6 1.0
CG G:GLU52 4.3 25.6 1.0
NE2 G:HIS55 4.4 26.8 1.0
CA G:GLU52 4.5 23.9 1.0
CG1 G:VAL99 4.5 24.4 1.0
CG G:GLU19 4.5 24.9 1.0
CD2 G:HIS55 4.6 26.0 1.0
CB G:GLU52 4.6 24.9 1.0
OE2 G:GLU96 4.6 44.9 1.0
OE1 G:GLU96 4.7 37.6 1.0
OE2 G:GLU132 4.8 61.1 1.0
CB G:GLU19 4.9 19.0 1.0
OG G:SER22 5.0 28.1 1.0

Iron binding site 8 out of 8 in 1vlg

Go back to Iron Binding Sites List in 1vlg
Iron binding site 8 out of 8 in the Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of Ferritin (TM1128) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe200

b:50.2
occ:0.95
 OE1 H:GLU52 1.9 32.6 1.0
OE1 H:GLU19 2.3 42.0 1.0
O H:HOH238 2.4 39.3 1.0
ND1 H:HIS55 2.4 30.4 1.0
O H:HOH237 2.6 38.2 1.0
CD H:GLU52 3.0 27.6 1.0
CD H:GLU19 3.2 37.3 1.0
CE1 H:HIS55 3.2 30.6 1.0
OE2 H:GLU19 3.4 36.1 1.0
OE2 H:GLU52 3.5 29.4 1.0
CG H:HIS55 3.5 25.2 1.0
CB H:HIS55 3.9 24.6 1.0
OE1 H:GLN129 4.1 23.9 1.0
CG H:GLU52 4.3 22.8 1.0
NE2 H:HIS55 4.4 28.4 1.0
CG1 H:VAL99 4.4 24.2 1.0
CB H:GLU52 4.4 23.0 1.0
CA H:GLU52 4.5 22.3 1.0
CD2 H:HIS55 4.6 29.8 1.0
CG H:GLU19 4.6 28.8 1.0
OE1 H:GLU96 4.6 37.2 1.0
OE2 H:GLU96 4.6 39.5 1.0
OE1 H:GLU132 5.0 44.1 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Aug 3 16:14:47 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy