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Iron in PDB 1vlj: Crystal Structure of Nadh-Dependent Butanol Dehydrogenase A (TM0820) From Thermotoga Maritima at 1.78 A Resolution

Protein crystallography data

The structure of Crystal Structure of Nadh-Dependent Butanol Dehydrogenase A (TM0820) From Thermotoga Maritima at 1.78 A Resolution, PDB code: 1vlj was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.60 / 1.78
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.691, 129.699, 55.234, 90.00, 103.61, 90.00
R / Rfree (%) 14.2 / 19.3

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Nadh-Dependent Butanol Dehydrogenase A (TM0820) From Thermotoga Maritima at 1.78 A Resolution (pdb code 1vlj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Nadh-Dependent Butanol Dehydrogenase A (TM0820) From Thermotoga Maritima at 1.78 A Resolution, PDB code: 1vlj:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1vlj

Go back to Iron Binding Sites List in 1vlj
Iron binding site 1 out of 2 in the Crystal Structure of Nadh-Dependent Butanol Dehydrogenase A (TM0820) From Thermotoga Maritima at 1.78 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Nadh-Dependent Butanol Dehydrogenase A (TM0820) From Thermotoga Maritima at 1.78 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe400

b:43.3
occ:1.00
OD1 A:ASP195 2.0 49.4 1.0
NE2 A:HIS282 2.2 51.7 1.0
NE2 A:HIS199 2.2 41.2 1.0
NE2 A:HIS268 2.3 43.6 1.0
C5N A:NAP800 2.7 51.4 1.0
CG A:ASP195 2.8 40.8 1.0
CD2 A:HIS282 2.9 52.1 1.0
OD2 A:ASP195 2.9 47.3 1.0
CD2 A:HIS268 2.9 42.9 1.0
CE1 A:HIS199 3.1 43.2 1.0
CD2 A:HIS199 3.1 41.7 1.0
C6N A:NAP800 3.4 61.1 1.0
CE1 A:HIS282 3.4 59.4 1.0
CE1 A:HIS268 3.5 47.9 1.0
C4N A:NAP800 3.8 55.0 1.0
ND1 A:HIS199 4.1 45.1 1.0
CD1 A:LEU286 4.1 44.9 1.0
CG A:HIS282 4.2 46.8 1.0
CG A:HIS199 4.2 40.1 1.0
CG A:HIS268 4.2 38.6 1.0
CB A:ASP195 4.3 37.3 1.0
ND1 A:HIS282 4.4 51.5 1.0
OG A:SER198 4.4 36.7 0.5
ND1 A:HIS268 4.4 41.1 1.0
O A:ASP195 4.5 36.8 1.0
CA A:ASP195 4.7 34.9 1.0
N1N A:NAP800 4.7 44.6 1.0
C A:ASP195 5.0 37.3 1.0

Iron binding site 2 out of 2 in 1vlj

Go back to Iron Binding Sites List in 1vlj
Iron binding site 2 out of 2 in the Crystal Structure of Nadh-Dependent Butanol Dehydrogenase A (TM0820) From Thermotoga Maritima at 1.78 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Nadh-Dependent Butanol Dehydrogenase A (TM0820) From Thermotoga Maritima at 1.78 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe400

b:44.1
occ:1.00
OD1 B:ASP195 2.1 46.7 1.0
NE2 B:HIS199 2.2 50.9 1.0
NE2 B:HIS268 2.3 41.2 1.0
NE2 B:HIS282 2.3 51.1 1.0
C5N B:NAP800 2.7 44.7 1.0
CG B:ASP195 2.8 49.7 1.0
OD2 B:ASP195 2.9 52.9 1.0
CD2 B:HIS282 3.0 55.0 1.0
CD2 B:HIS268 3.0 48.7 1.0
CE1 B:HIS199 3.1 46.2 1.0
CD2 B:HIS199 3.1 44.8 1.0
C6N B:NAP800 3.4 49.8 1.0
CE1 B:HIS268 3.4 43.2 1.0
CE1 B:HIS282 3.5 55.6 1.0
C4N B:NAP800 3.8 52.8 1.0
CD1 B:LEU286 4.1 45.9 1.0
ND1 B:HIS199 4.1 41.9 1.0
CG B:HIS199 4.2 42.5 1.0
CG B:HIS282 4.2 44.2 1.0
CG B:HIS268 4.2 43.2 1.0
CB B:ASP195 4.3 38.4 1.0
ND1 B:HIS268 4.4 46.4 1.0
ND1 B:HIS282 4.4 49.8 1.0
OG B:SER198 4.5 45.0 0.5
O B:ASP195 4.5 35.8 1.0
CA B:ASP195 4.8 37.9 1.0
N1N B:NAP800 4.8 45.8 1.0
C B:ASP195 5.0 38.0 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Aug 3 16:15:26 2024

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