Iron in PDB 1vrb: Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution

The structure of Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution, PDB code: 1vrb was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.66 / 2.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.300, 104.660, 286.610, 90.00, 90.00, 90.00
R / Rfree (%)	22.1 / 27.2

The binding sites of Iron atom in the Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution (pdb code 1vrb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution, PDB code: 1vrb:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe555 b:0.4 occ:1.00 NE2 A:HIS224 2.3 60.1 1.0 OD2 A:ASP147 2.3 82.2 1.0 NE2 A:HIS145 2.5 67.3 1.0 O A:HOH561 3.0 76.9 1.0 CE1 A:HIS145 3.2 64.5 1.0 CE1 A:HIS224 3.2 58.0 1.0 CD2 A:HIS224 3.4 61.4 1.0 CG A:ASP147 3.5 74.2 1.0 CD2 A:HIS145 3.6 58.5 1.0 O A:HOH559 3.7 66.5 1.0 OD1 A:ASP147 4.0 90.6 1.0 ND1 A:HIS224 4.4 59.0 1.0 ND1 A:HIS145 4.4 68.7 1.0 CG A:HIS224 4.5 60.1 1.0 CG A:HIS145 4.6 65.8 1.0 CB A:ASP147 4.7 64.8 1.0 CD2 A:LEU218 5.0 64.3 1.0

Iron binding site 2 out of 4 in the Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe555 b:0.6 occ:1.00 OD2 B:ASP147 2.2 87.0 1.0 NE2 B:HIS145 2.6 69.7 1.0 NE2 B:HIS224 2.8 65.3 1.0 CE1 B:HIS145 3.2 67.5 1.0 CG B:ASP147 3.3 77.8 1.0 CE1 B:HIS224 3.7 60.2 1.0 CD2 B:HIS224 3.7 66.0 1.0 OD1 B:ASP147 3.7 89.5 1.0 CD2 B:HIS145 3.8 62.3 1.0 ND1 B:HIS145 4.4 67.3 1.0 CE1 B:PHE142 4.6 71.0 1.0 CB B:ASP147 4.6 68.8 1.0 CZ B:PHE142 4.6 69.5 1.0 CG B:HIS145 4.8 63.4 1.0 ND1 B:HIS224 4.8 58.7 1.0 CG B:HIS224 4.9 60.5 1.0 CD2 B:LEU218 5.0 63.5 1.0

Iron binding site 3 out of 4 in the Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe555 b:0.8 occ:1.00 NE2 C:HIS145 2.3 67.2 1.0 OD2 C:ASP147 2.5 86.2 1.0 NE2 C:HIS224 2.7 57.7 1.0 CE1 C:HIS145 3.0 64.3 1.0 CG C:ASP147 3.3 76.2 1.0 OD1 C:ASP147 3.5 84.7 1.0 CD2 C:HIS145 3.5 61.2 1.0 O C:HOH560 3.5 63.0 1.0 CD2 C:HIS224 3.6 62.9 1.0 CE1 C:HIS224 3.8 59.5 1.0 ND1 C:HIS145 4.2 68.3 1.0 CG C:HIS145 4.5 64.1 1.0 CB C:ASP147 4.7 67.0 1.0 CG C:HIS224 4.8 62.7 1.0 ND1 C:HIS224 4.9 58.0 1.0

Iron binding site 4 out of 4 in the Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe555 b:85.1 occ:1.00 O D:HOH562 2.1 48.7 1.0 OD2 D:ASP147 2.2 82.7 1.0 NE2 D:HIS224 2.3 59.8 1.0 NE2 D:HIS145 2.3 69.9 1.0 O D:HOH561 2.5 63.8 1.0 CE1 D:HIS145 3.0 61.2 1.0 CD2 D:HIS224 3.3 59.5 1.0 CE1 D:HIS224 3.3 59.3 1.0 CG D:ASP147 3.4 75.9 1.0 CD2 D:HIS145 3.5 58.3 1.0 OD1 D:ASP147 3.9 87.9 1.0 ND1 D:HIS145 4.2 70.4 1.0 ND1 D:HIS224 4.4 59.2 1.0 CG D:HIS224 4.4 56.5 1.0 CG D:HIS145 4.4 65.8 1.0 CB D:ASP147 4.6 66.2 1.0 CD2 D:LEU218 4.7 64.4 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.