Atomistry » Iron » PDB 1vrb-1w9m » 1vrb
Atomistry »
  Iron »
    PDB 1vrb-1w9m »
      1vrb »

Iron in PDB 1vrb: Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution, PDB code: 1vrb was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.66 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.300, 104.660, 286.610, 90.00, 90.00, 90.00
R / Rfree (%) 22.1 / 27.2

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution (pdb code 1vrb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution, PDB code: 1vrb:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1vrb

Go back to Iron Binding Sites List in 1vrb
Iron binding site 1 out of 4 in the Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe555

b:0.4
occ:1.00
NE2 A:HIS224 2.3 60.1 1.0
OD2 A:ASP147 2.3 82.2 1.0
NE2 A:HIS145 2.5 67.3 1.0
O A:HOH561 3.0 76.9 1.0
CE1 A:HIS145 3.2 64.5 1.0
CE1 A:HIS224 3.2 58.0 1.0
CD2 A:HIS224 3.4 61.4 1.0
CG A:ASP147 3.5 74.2 1.0
CD2 A:HIS145 3.6 58.5 1.0
O A:HOH559 3.7 66.5 1.0
OD1 A:ASP147 4.0 90.6 1.0
ND1 A:HIS224 4.4 59.0 1.0
ND1 A:HIS145 4.4 68.7 1.0
CG A:HIS224 4.5 60.1 1.0
CG A:HIS145 4.6 65.8 1.0
CB A:ASP147 4.7 64.8 1.0
CD2 A:LEU218 5.0 64.3 1.0

Iron binding site 2 out of 4 in 1vrb

Go back to Iron Binding Sites List in 1vrb
Iron binding site 2 out of 4 in the Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe555

b:0.6
occ:1.00
OD2 B:ASP147 2.2 87.0 1.0
NE2 B:HIS145 2.6 69.7 1.0
NE2 B:HIS224 2.8 65.3 1.0
CE1 B:HIS145 3.2 67.5 1.0
CG B:ASP147 3.3 77.8 1.0
CE1 B:HIS224 3.7 60.2 1.0
CD2 B:HIS224 3.7 66.0 1.0
OD1 B:ASP147 3.7 89.5 1.0
CD2 B:HIS145 3.8 62.3 1.0
ND1 B:HIS145 4.4 67.3 1.0
CE1 B:PHE142 4.6 71.0 1.0
CB B:ASP147 4.6 68.8 1.0
CZ B:PHE142 4.6 69.5 1.0
CG B:HIS145 4.8 63.4 1.0
ND1 B:HIS224 4.8 58.7 1.0
CG B:HIS224 4.9 60.5 1.0
CD2 B:LEU218 5.0 63.5 1.0

Iron binding site 3 out of 4 in 1vrb

Go back to Iron Binding Sites List in 1vrb
Iron binding site 3 out of 4 in the Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe555

b:0.8
occ:1.00
NE2 C:HIS145 2.3 67.2 1.0
OD2 C:ASP147 2.5 86.2 1.0
NE2 C:HIS224 2.7 57.7 1.0
CE1 C:HIS145 3.0 64.3 1.0
CG C:ASP147 3.3 76.2 1.0
OD1 C:ASP147 3.5 84.7 1.0
CD2 C:HIS145 3.5 61.2 1.0
O C:HOH560 3.5 63.0 1.0
CD2 C:HIS224 3.6 62.9 1.0
CE1 C:HIS224 3.8 59.5 1.0
ND1 C:HIS145 4.2 68.3 1.0
CG C:HIS145 4.5 64.1 1.0
CB C:ASP147 4.7 67.0 1.0
CG C:HIS224 4.8 62.7 1.0
ND1 C:HIS224 4.9 58.0 1.0

Iron binding site 4 out of 4 in 1vrb

Go back to Iron Binding Sites List in 1vrb
Iron binding site 4 out of 4 in the Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe555

b:85.1
occ:1.00
O D:HOH562 2.1 48.7 1.0
OD2 D:ASP147 2.2 82.7 1.0
NE2 D:HIS224 2.3 59.8 1.0
NE2 D:HIS145 2.3 69.9 1.0
O D:HOH561 2.5 63.8 1.0
CE1 D:HIS145 3.0 61.2 1.0
CD2 D:HIS224 3.3 59.5 1.0
CE1 D:HIS224 3.3 59.3 1.0
CG D:ASP147 3.4 75.9 1.0
CD2 D:HIS145 3.5 58.3 1.0
OD1 D:ASP147 3.9 87.9 1.0
ND1 D:HIS145 4.2 70.4 1.0
ND1 D:HIS224 4.4 59.2 1.0
CG D:HIS224 4.4 56.5 1.0
CG D:HIS145 4.4 65.8 1.0
CB D:ASP147 4.6 66.2 1.0
CD2 D:LEU218 4.7 64.4 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Dec 13 14:34:31 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy