Iron in PDB 1vyd: Crystal Structure of Cytochrome C2 Mutant G95E

The structure of Crystal Structure of Cytochrome C2 Mutant G95E, PDB code: 1vyd was solved by C.Dumortier, J.Fitch, F.Van Petegem, W.Vermeulen, T.E.Meyer, J.J.Vanbeeumen, M.A.Cusanovich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.30
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	100.230, 100.230, 162.150, 90.00, 90.00, 120.00
R / Rfree (%)	19.8 / 24.2

The binding sites of Iron atom in the Crystal Structure of Cytochrome C2 Mutant G95E (pdb code 1vyd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Cytochrome C2 Mutant G95E, PDB code: 1vyd:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of Cytochrome C2 Mutant G95E


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome C2 Mutant G95E within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1117 b:25.7 occ:1.00 FE A:HEM1117 0.0 25.7 1.0 ND A:HEM1117 2.0 22.2 1.0 NB A:HEM1117 2.0 21.6 1.0 NA A:HEM1117 2.0 23.0 1.0 NC A:HEM1117 2.0 24.2 1.0 NE2 A:HIS17 2.1 25.8 1.0 SD A:MET96 2.4 31.0 1.0 C4A A:HEM1117 3.0 23.4 1.0 C4B A:HEM1117 3.0 22.2 1.0 C4D A:HEM1117 3.0 25.2 1.0 C1B A:HEM1117 3.0 21.5 1.0 C1A A:HEM1117 3.0 23.8 1.0 C1D A:HEM1117 3.0 22.3 1.0 C4C A:HEM1117 3.0 25.1 1.0 C1C A:HEM1117 3.0 24.3 1.0 CE1 A:HIS17 3.1 25.3 1.0 CD2 A:HIS17 3.1 26.7 1.0 CHA A:HEM1117 3.4 25.4 1.0 CHD A:HEM1117 3.4 23.5 1.0 CE A:MET96 3.4 31.6 1.0 CHC A:HEM1117 3.5 22.8 1.0 CHB A:HEM1117 3.5 23.6 1.0 CG A:MET96 3.5 32.3 1.0 CB A:MET96 4.2 34.8 1.0 C3B A:HEM1117 4.2 23.5 1.0 ND1 A:HIS17 4.2 25.0 1.0 C3A A:HEM1117 4.2 23.1 1.0 C3D A:HEM1117 4.2 22.3 1.0 C2A A:HEM1117 4.2 24.7 1.0 C2D A:HEM1117 4.2 21.4 1.0 C2B A:HEM1117 4.2 23.7 1.0 C3C A:HEM1117 4.3 24.3 1.0 CG A:HIS17 4.3 26.1 1.0 C2C A:HEM1117 4.3 22.1 1.0

Iron binding site 2 out of 2 in the Crystal Structure of Cytochrome C2 Mutant G95E


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Cytochrome C2 Mutant G95E within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1117 b:27.7 occ:1.00 FE B:HEM1117 0.0 27.7 1.0 NB B:HEM1117 2.0 25.9 1.0 ND B:HEM1117 2.0 20.2 1.0 NA B:HEM1117 2.0 25.5 1.0 NC B:HEM1117 2.0 24.5 1.0 NE2 B:HIS17 2.2 22.9 1.0 SD B:MET96 2.5 37.3 1.0 C4B B:HEM1117 3.0 27.7 1.0 C4D B:HEM1117 3.0 26.2 1.0 C1D B:HEM1117 3.0 26.1 1.0 C1B B:HEM1117 3.0 27.4 1.0 C1A B:HEM1117 3.0 23.9 1.0 C1C B:HEM1117 3.0 22.8 1.0 C4A B:HEM1117 3.0 24.3 1.0 C4C B:HEM1117 3.1 24.9 1.0 CE1 B:HIS17 3.1 21.6 1.0 CD2 B:HIS17 3.1 20.9 1.0 CHC B:HEM1117 3.4 23.7 1.0 CHA B:HEM1117 3.4 24.6 1.0 CE B:MET96 3.4 31.9 1.0 CHB B:HEM1117 3.4 26.1 1.0 CG B:MET96 3.4 34.0 1.0 CHD B:HEM1117 3.5 25.2 1.0 ND1 B:HIS17 4.2 22.7 1.0 CB B:MET96 4.2 34.3 1.0 C3B B:HEM1117 4.2 28.1 1.0 C2B B:HEM1117 4.2 25.7 1.0 C2A B:HEM1117 4.2 26.4 1.0 C3D B:HEM1117 4.2 25.1 1.0 C3A B:HEM1117 4.3 26.5 1.0 CG B:HIS17 4.3 23.4 1.0 C2D B:HEM1117 4.3 26.1 1.0 C2C B:HEM1117 4.3 28.6 1.0 C3C B:HEM1117 4.3 28.5 1.0

C.Dumortier, J.Fitch, F.Van Petegem, W.Vermeulen, T.E.Meyer, J.J.Van Beeumen, M.A.Cusanovich. Protein Dynamics in the Region of the Sixth Ligand Methionine Revealed By Studies of Imidazole Binding to Rhodobacter Capsulatus Cytochrome C2 Hinge Mutants. Biochemistry V. 43 7717 2004.
ISSN: ISSN 0006-2960
PubMed: 15196014
DOI: 10.1021/BI0362370