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Iron in PDB 1wmu: Crystal Structure of Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea, at 1.65 A Resolution

Protein crystallography data

The structure of Crystal Structure of Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea, at 1.65 A Resolution, PDB code: 1wmu was solved by T.Kuwada, T.Hasegawa, I.Satoh, K.Ishikawa, F.Shishikura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.48 / 1.65
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 112.244, 62.138, 53.926, 90.00, 109.98, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea, at 1.65 A Resolution (pdb code 1wmu). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea, at 1.65 A Resolution, PDB code: 1wmu:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1wmu

Go back to Iron Binding Sites List in 1wmu
Iron binding site 1 out of 2 in the Crystal Structure of Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea, at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea, at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:17.6
occ:1.00
FE A:HEM201 0.0 17.6 1.0
O A:HOH202 2.0 17.0 1.0
NB A:HEM201 2.0 16.8 1.0
NC A:HEM201 2.1 15.1 1.0
NA A:HEM201 2.1 17.2 1.0
ND A:HEM201 2.1 18.0 1.0
NE2 A:HIS87 2.2 14.3 1.0
C4B A:HEM201 3.0 18.1 1.0
C1C A:HEM201 3.0 14.7 1.0
C1B A:HEM201 3.0 19.8 1.0
C1A A:HEM201 3.1 19.3 1.0
C4D A:HEM201 3.1 18.9 1.0
C4A A:HEM201 3.1 21.1 1.0
C4C A:HEM201 3.1 15.5 1.0
C1D A:HEM201 3.1 17.7 1.0
CE1 A:HIS87 3.1 14.7 1.0
CD2 A:HIS87 3.2 14.2 1.0
CHC A:HEM201 3.4 16.0 1.0
CHA A:HEM201 3.4 18.8 1.0
CHB A:HEM201 3.5 20.4 1.0
CHD A:HEM201 3.5 16.2 1.0
C3B A:HEM201 4.2 17.9 1.0
C2B A:HEM201 4.3 20.0 1.0
ND1 A:HIS87 4.3 16.6 1.0
C2C A:HEM201 4.3 13.7 1.0
C2A A:HEM201 4.3 20.3 1.0
C3C A:HEM201 4.3 16.1 1.0
C3D A:HEM201 4.3 17.4 1.0
NE2 A:HIS58 4.3 15.3 1.0
C3A A:HEM201 4.3 21.4 1.0
CG A:HIS87 4.3 15.2 1.0
C2D A:HEM201 4.3 16.8 1.0
CE1 A:HIS58 4.4 15.6 1.0

Iron binding site 2 out of 2 in 1wmu

Go back to Iron Binding Sites List in 1wmu
Iron binding site 2 out of 2 in the Crystal Structure of Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea, at 1.65 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea, at 1.65 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:21.6
occ:1.00
FE B:HEM201 0.0 21.6 1.0
O B:HOH202 2.0 21.8 1.0
NB B:HEM201 2.0 19.1 1.0
NA B:HEM201 2.1 21.5 1.0
NC B:HEM201 2.1 18.7 1.0
ND B:HEM201 2.1 20.8 1.0
NE2 B:HIS92 2.2 21.1 1.0
C4B B:HEM201 3.0 18.2 1.0
C1C B:HEM201 3.0 17.9 1.0
C1B B:HEM201 3.0 20.4 1.0
C1A B:HEM201 3.0 22.4 1.0
C4D B:HEM201 3.1 21.9 1.0
C4A B:HEM201 3.1 23.1 1.0
CD2 B:HIS92 3.1 21.5 1.0
C4C B:HEM201 3.1 19.8 1.0
C1D B:HEM201 3.1 21.5 1.0
CE1 B:HIS92 3.2 22.3 1.0
CHC B:HEM201 3.4 18.0 1.0
CHA B:HEM201 3.4 22.0 1.0
CHB B:HEM201 3.5 21.7 1.0
CHD B:HEM201 3.5 20.5 1.0
C3B B:HEM201 4.3 20.8 1.0
C2B B:HEM201 4.3 20.1 1.0
NE2 B:HIS63 4.3 20.4 1.0
CG B:HIS92 4.3 21.9 1.0
ND1 B:HIS92 4.3 20.8 1.0
C2A B:HEM201 4.3 24.6 1.0
C2C B:HEM201 4.3 18.3 1.0
C3A B:HEM201 4.3 23.1 1.0
C3D B:HEM201 4.3 23.0 1.0
C3C B:HEM201 4.3 19.5 1.0
C2D B:HEM201 4.3 22.0 1.0
CG2 B:VAL67 4.6 18.5 1.0
CE1 B:HIS63 4.7 19.4 1.0

Reference:

T.Kuwada, T.Hasegawa, I.Satoh, K.Ishikawa, F.Shishikura. Crystal Structure of Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea, at 1.65 A Resolution To Be Published.
Page generated: Sun Dec 13 14:35:10 2020

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