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Iron in PDB 1wox: Crystal Structure of Heme Oxygenase-2 From Synechocystis Sp. Pcc 6803 in Complex with Heme and No

Enzymatic activity of Crystal Structure of Heme Oxygenase-2 From Synechocystis Sp. Pcc 6803 in Complex with Heme and No

All present enzymatic activity of Crystal Structure of Heme Oxygenase-2 From Synechocystis Sp. Pcc 6803 in Complex with Heme and No:
1.14.99.3;

Protein crystallography data

The structure of Crystal Structure of Heme Oxygenase-2 From Synechocystis Sp. Pcc 6803 in Complex with Heme and No, PDB code: 1wox was solved by M.Sugishima, Y.Hagiwara, X.Zhang, T.Yoshida, C.T.Migita, K.Fukuyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.310, 73.760, 71.070, 90.00, 106.91, 90.00
R / Rfree (%) 21.1 / 24.6

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Heme Oxygenase-2 From Synechocystis Sp. Pcc 6803 in Complex with Heme and No (pdb code 1wox). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Heme Oxygenase-2 From Synechocystis Sp. Pcc 6803 in Complex with Heme and No, PDB code: 1wox:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1wox

Go back to Iron Binding Sites List in 1wox
Iron binding site 1 out of 2 in the Crystal Structure of Heme Oxygenase-2 From Synechocystis Sp. Pcc 6803 in Complex with Heme and No


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Heme Oxygenase-2 From Synechocystis Sp. Pcc 6803 in Complex with Heme and No within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe300

b:16.2
occ:1.00
FE A:HEM300 0.0 16.2 1.0
ND A:HEM300 2.0 17.6 1.0
NB A:HEM300 2.0 16.7 1.0
NC A:HEM300 2.0 16.8 1.0
NA A:HEM300 2.0 18.1 1.0
N A:NO301 2.1 17.7 1.0
NE2 A:HIS16 2.1 16.5 1.0
O A:NO301 2.9 20.7 1.0
C4D A:HEM300 3.0 15.9 1.0
CD2 A:HIS16 3.0 14.1 1.0
C1D A:HEM300 3.0 16.2 1.0
C1B A:HEM300 3.0 15.7 1.0
C1A A:HEM300 3.0 18.3 1.0
C4A A:HEM300 3.0 17.6 1.0
C4B A:HEM300 3.0 15.6 1.0
C4C A:HEM300 3.0 15.7 1.0
C1C A:HEM300 3.1 15.4 1.0
CE1 A:HIS16 3.2 14.2 1.0
CHA A:HEM300 3.4 17.1 1.0
CHD A:HEM300 3.4 16.0 1.0
CHB A:HEM300 3.4 16.6 1.0
CHC A:HEM300 3.4 16.1 1.0
CG A:HIS16 4.2 15.2 1.0
ND1 A:HIS16 4.2 13.6 1.0
C3D A:HEM300 4.3 15.4 1.0
C2D A:HEM300 4.3 17.5 1.0
C2A A:HEM300 4.3 20.6 1.0
C2B A:HEM300 4.3 15.7 1.0
C3C A:HEM300 4.3 13.4 1.0
C3A A:HEM300 4.3 20.1 1.0
C3B A:HEM300 4.3 15.0 1.0
C2C A:HEM300 4.3 13.3 1.0
N A:GLY133 4.4 19.1 1.0
CA A:GLY129 4.5 15.6 1.0
CA A:GLY133 4.6 18.6 1.0
CB A:SER132 4.9 18.6 1.0
O A:GLY129 4.9 11.4 1.0

Iron binding site 2 out of 2 in 1wox

Go back to Iron Binding Sites List in 1wox
Iron binding site 2 out of 2 in the Crystal Structure of Heme Oxygenase-2 From Synechocystis Sp. Pcc 6803 in Complex with Heme and No


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Heme Oxygenase-2 From Synechocystis Sp. Pcc 6803 in Complex with Heme and No within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe300

b:17.4
occ:1.00
FE B:HEM300 0.0 17.4 1.0
ND B:HEM300 2.0 16.4 1.0
NB B:HEM300 2.0 17.1 1.0
NC B:HEM300 2.0 16.8 1.0
NA B:HEM300 2.0 17.0 1.0
NE2 B:HIS16 2.1 16.4 1.0
N B:NO301 2.1 17.3 1.0
O B:NO301 2.8 19.6 1.0
C4D B:HEM300 3.0 15.6 1.0
CE1 B:HIS16 3.0 13.3 1.0
C1D B:HEM300 3.0 15.5 1.0
C1B B:HEM300 3.0 17.1 1.0
C4A B:HEM300 3.0 16.9 1.0
CD2 B:HIS16 3.0 14.8 1.0
C4B B:HEM300 3.0 16.9 1.0
C4C B:HEM300 3.0 15.9 1.0
C1A B:HEM300 3.0 17.5 1.0
C1C B:HEM300 3.1 15.3 1.0
CHA B:HEM300 3.4 14.9 1.0
CHD B:HEM300 3.4 16.4 1.0
CHC B:HEM300 3.4 15.7 1.0
CHB B:HEM300 3.4 17.4 1.0
ND1 B:HIS16 4.1 15.9 1.0
CG B:HIS16 4.2 13.9 1.0
C3D B:HEM300 4.3 16.1 1.0
C2D B:HEM300 4.3 16.2 1.0
C3C B:HEM300 4.3 14.9 1.0
C2B B:HEM300 4.3 16.9 1.0
C2A B:HEM300 4.3 19.0 1.0
C3A B:HEM300 4.3 18.4 1.0
C3B B:HEM300 4.3 17.1 1.0
C2C B:HEM300 4.3 14.2 1.0
N B:GLY133 4.4 19.2 1.0
CA B:GLY129 4.5 14.1 1.0
CA B:GLY133 4.6 18.9 1.0
CB B:SER132 4.9 16.5 1.0
O B:GLY129 4.9 12.3 1.0

Reference:

M.Sugishima, Y.Hagiwara, X.Zhang, T.Yoshida, C.T.Migita, K.Fukuyama. Crystal Structure of Dimeric Heme Oxygenase-2 From Synechocystis Sp. Pcc 6803 in Complex with Heme. Biochemistry V. 44 4257 2005.
ISSN: ISSN 0006-2960
PubMed: 15766254
DOI: 10.1021/BI0480483
Page generated: Sun Dec 13 14:35:16 2020

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