Iron in PDB 1wul: High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
Enzymatic activity of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
All present enzymatic activity of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F:
1.12.2.1;
Protein crystallography data
The structure of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F, PDB code: 1wul
was solved by
H.Ogata,
S.Hirota,
A.Nakahara,
H.Komori,
N.Shibata,
T.Kato,
K.Kano,
Y.Higuchi,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
1.50
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
98.116,
126.016,
66.731,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
12.2 /
16.9
|
Other elements in 1wul:
The structure of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
(pdb code 1wul). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F, PDB code: 1wul:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 1wul
Go back to
Iron Binding Sites List in 1wul
Iron binding site 1 out
of 12 in the High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1001
b:8.1
occ:1.00
|
FE1
|
S:SF41001
|
0.0
|
8.1
|
1.0
|
S4
|
S:SF41001
|
2.2
|
8.2
|
1.0
|
SG
|
S:CYS17
|
2.3
|
7.7
|
1.0
|
S3
|
S:SF41001
|
2.3
|
8.6
|
1.0
|
S2
|
S:SF41001
|
2.3
|
8.0
|
1.0
|
FE2
|
S:SF41001
|
2.6
|
8.4
|
1.0
|
FE3
|
S:SF41001
|
2.7
|
8.1
|
1.0
|
FE4
|
S:SF41001
|
2.7
|
8.3
|
1.0
|
CB
|
S:CYS17
|
3.4
|
7.2
|
1.0
|
N
|
S:CYS17
|
3.7
|
7.8
|
1.0
|
S1
|
S:SF41001
|
3.9
|
8.2
|
1.0
|
CA
|
S:CYS17
|
4.1
|
6.7
|
1.0
|
N
|
S:GLY19
|
4.1
|
7.1
|
1.0
|
CE1
|
L:HIS235
|
4.1
|
5.5
|
1.0
|
CA
|
S:GLY19
|
4.4
|
7.2
|
1.0
|
O
|
S:HOH5012
|
4.5
|
7.9
|
1.0
|
N
|
S:THR18
|
4.5
|
7.0
|
1.0
|
C
|
S:CYS17
|
4.5
|
6.0
|
1.0
|
N
|
S:CYS20
|
4.6
|
7.1
|
1.0
|
CG
|
L:ARG79
|
4.6
|
7.9
|
1.0
|
SG
|
S:CYS114
|
4.7
|
8.8
|
1.0
|
SG
|
S:CYS150
|
4.7
|
8.2
|
1.0
|
ND1
|
L:HIS235
|
4.8
|
9.6
|
1.0
|
SG
|
S:CYS20
|
4.8
|
8.6
|
1.0
|
C
|
S:GLU16
|
4.8
|
8.2
|
1.0
|
C
|
S:GLY19
|
5.0
|
7.6
|
1.0
|
|
Iron binding site 2 out
of 12 in 1wul
Go back to
Iron Binding Sites List in 1wul
Iron binding site 2 out
of 12 in the High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1001
b:8.4
occ:1.00
|
FE2
|
S:SF41001
|
0.0
|
8.4
|
1.0
|
S3
|
S:SF41001
|
2.3
|
8.6
|
1.0
|
S4
|
S:SF41001
|
2.3
|
8.2
|
1.0
|
SG
|
S:CYS114
|
2.3
|
8.8
|
1.0
|
S1
|
S:SF41001
|
2.3
|
8.2
|
1.0
|
FE3
|
S:SF41001
|
2.6
|
8.1
|
1.0
|
FE1
|
S:SF41001
|
2.6
|
8.1
|
1.0
|
FE4
|
S:SF41001
|
2.7
|
8.3
|
1.0
|
CB
|
S:CYS114
|
3.3
|
8.1
|
1.0
|
S2
|
S:SF41001
|
3.8
|
8.0
|
1.0
|
O
|
S:HOH5037
|
4.0
|
9.5
|
1.0
|
N
|
S:CYS114
|
4.1
|
8.2
|
1.0
|
O
|
S:HOH5021
|
4.1
|
8.9
|
1.0
|
O
|
S:HOH5012
|
4.1
|
7.9
|
1.0
|
CA
|
S:CYS114
|
4.2
|
6.8
|
1.0
|
SG
|
S:CYS150
|
4.5
|
8.2
|
1.0
|
SG
|
S:CYS20
|
4.7
|
8.6
|
1.0
|
N
|
S:CYS17
|
4.8
|
7.8
|
1.0
|
SG
|
S:CYS17
|
4.8
|
7.7
|
1.0
|
CA
|
S:GLU16
|
4.9
|
7.4
|
1.0
|
|
Iron binding site 3 out
of 12 in 1wul
Go back to
Iron Binding Sites List in 1wul
Iron binding site 3 out
of 12 in the High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1001
b:8.1
occ:1.00
|
FE3
|
S:SF41001
|
0.0
|
8.1
|
1.0
|
S2
|
S:SF41001
|
2.3
|
8.0
|
1.0
|
S1
|
S:SF41001
|
2.3
|
8.2
|
1.0
|
SG
|
S:CYS150
|
2.3
|
8.2
|
1.0
|
S4
|
S:SF41001
|
2.3
|
8.2
|
1.0
|
FE2
|
S:SF41001
|
2.6
|
8.4
|
1.0
|
FE1
|
S:SF41001
|
2.7
|
8.1
|
1.0
|
FE4
|
S:SF41001
|
2.7
|
8.3
|
1.0
|
CB
|
S:CYS150
|
3.4
|
7.3
|
1.0
|
CA
|
S:CYS150
|
3.5
|
7.0
|
1.0
|
O
|
S:HOH5037
|
3.9
|
9.5
|
1.0
|
C
|
S:CYS150
|
3.9
|
6.8
|
1.0
|
S3
|
S:SF41001
|
3.9
|
8.6
|
1.0
|
CG
|
L:ARG79
|
4.1
|
7.9
|
1.0
|
O
|
S:CYS150
|
4.3
|
7.7
|
1.0
|
N
|
S:PRO151
|
4.4
|
6.4
|
1.0
|
SG
|
S:CYS114
|
4.4
|
8.8
|
1.0
|
ND1
|
L:HIS235
|
4.6
|
9.6
|
1.0
|
CE1
|
L:HIS235
|
4.6
|
5.5
|
1.0
|
SG
|
S:CYS17
|
4.6
|
7.7
|
1.0
|
NE
|
L:ARG79
|
4.6
|
7.9
|
1.0
|
CA
|
S:PRO151
|
4.7
|
6.7
|
1.0
|
O
|
S:GLY149
|
4.7
|
6.7
|
1.0
|
SG
|
S:CYS20
|
4.7
|
8.6
|
1.0
|
N
|
S:CYS150
|
4.8
|
7.5
|
1.0
|
|
Iron binding site 4 out
of 12 in 1wul
Go back to
Iron Binding Sites List in 1wul
Iron binding site 4 out
of 12 in the High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1001
b:8.3
occ:1.00
|
FE4
|
S:SF41001
|
0.0
|
8.3
|
1.0
|
SG
|
S:CYS20
|
2.2
|
8.6
|
1.0
|
S1
|
S:SF41001
|
2.3
|
8.2
|
1.0
|
S2
|
S:SF41001
|
2.3
|
8.0
|
1.0
|
S3
|
S:SF41001
|
2.3
|
8.6
|
1.0
|
FE1
|
S:SF41001
|
2.7
|
8.1
|
1.0
|
FE3
|
S:SF41001
|
2.7
|
8.1
|
1.0
|
FE2
|
S:SF41001
|
2.7
|
8.4
|
1.0
|
CB
|
S:CYS20
|
3.5
|
9.3
|
1.0
|
N
|
S:CYS20
|
3.6
|
7.1
|
1.0
|
O
|
S:HOH5021
|
4.0
|
8.9
|
1.0
|
S4
|
S:SF41001
|
4.0
|
8.2
|
1.0
|
CA
|
S:CYS20
|
4.0
|
7.1
|
1.0
|
CB
|
S:PRO151
|
4.3
|
7.3
|
1.0
|
CA
|
S:PRO151
|
4.4
|
6.7
|
1.0
|
CA
|
S:GLY112
|
4.4
|
13.4
|
1.0
|
C
|
S:GLY19
|
4.5
|
7.6
|
1.0
|
SG
|
S:CYS17
|
4.7
|
7.7
|
1.0
|
CA
|
S:CYS150
|
4.7
|
7.0
|
1.0
|
OE1
|
S:GLU75
|
4.8
|
11.1
|
1.0
|
O
|
S:GLY149
|
4.8
|
6.7
|
1.0
|
N
|
S:PRO151
|
4.8
|
6.4
|
1.0
|
CA
|
S:GLY19
|
4.8
|
7.2
|
1.0
|
SG
|
S:CYS150
|
4.9
|
8.2
|
1.0
|
N
|
S:GLY19
|
4.9
|
7.1
|
1.0
|
SG
|
S:CYS114
|
4.9
|
8.8
|
1.0
|
|
Iron binding site 5 out
of 12 in 1wul
Go back to
Iron Binding Sites List in 1wul
Iron binding site 5 out
of 12 in the High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1002
b:10.1
occ:1.00
|
FE1
|
S:SF41002
|
0.0
|
10.1
|
1.0
|
ND1
|
S:HIS188
|
2.1
|
10.6
|
1.0
|
S4
|
S:SF41002
|
2.3
|
9.3
|
1.0
|
S3
|
S:SF41002
|
2.3
|
9.7
|
1.0
|
S2
|
S:SF41002
|
2.3
|
10.3
|
1.0
|
FE3
|
S:SF41002
|
2.6
|
9.8
|
1.0
|
FE2
|
S:SF41002
|
2.7
|
9.2
|
1.0
|
FE4
|
S:SF41002
|
2.7
|
10.1
|
1.0
|
CE1
|
S:HIS188
|
3.0
|
11.4
|
1.0
|
CG
|
S:HIS188
|
3.2
|
10.2
|
1.0
|
CB
|
S:HIS188
|
3.7
|
9.6
|
1.0
|
S1
|
S:SF41002
|
3.8
|
9.5
|
1.0
|
CA
|
S:HIS188
|
3.9
|
9.1
|
1.0
|
NE2
|
S:HIS188
|
4.2
|
11.4
|
1.0
|
CD
|
S:PRO225
|
4.3
|
10.0
|
1.0
|
CD2
|
S:HIS188
|
4.3
|
9.2
|
1.0
|
CG
|
S:PRO225
|
4.3
|
10.4
|
1.0
|
CB
|
S:CYS191
|
4.4
|
9.6
|
1.0
|
O
|
S:HIS188
|
4.4
|
11.6
|
1.0
|
SG
|
S:CYS191
|
4.6
|
9.8
|
1.0
|
SG
|
S:CYS216
|
4.6
|
10.5
|
1.0
|
C
|
S:HIS188
|
4.6
|
9.1
|
1.0
|
CD2
|
S:PHE197
|
4.7
|
12.7
|
1.0
|
SG
|
S:CYS222
|
4.7
|
8.8
|
1.0
|
N
|
S:PRO225
|
4.8
|
8.3
|
1.0
|
CA
|
S:GLY224
|
4.9
|
8.0
|
1.0
|
|
Iron binding site 6 out
of 12 in 1wul
Go back to
Iron Binding Sites List in 1wul
Iron binding site 6 out
of 12 in the High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1002
b:9.2
occ:1.00
|
FE2
|
S:SF41002
|
0.0
|
9.2
|
1.0
|
S4
|
S:SF41002
|
2.3
|
9.3
|
1.0
|
S3
|
S:SF41002
|
2.3
|
9.7
|
1.0
|
S1
|
S:SF41002
|
2.3
|
9.5
|
1.0
|
SG
|
S:CYS222
|
2.3
|
8.8
|
1.0
|
FE3
|
S:SF41002
|
2.7
|
9.8
|
1.0
|
FE1
|
S:SF41002
|
2.7
|
10.1
|
1.0
|
FE4
|
S:SF41002
|
2.8
|
10.1
|
1.0
|
CB
|
S:CYS222
|
3.2
|
9.4
|
1.0
|
S2
|
S:SF41002
|
3.9
|
10.3
|
1.0
|
CG2
|
S:VAL243
|
4.4
|
10.8
|
1.0
|
N
|
S:GLY224
|
4.5
|
8.1
|
1.0
|
CA
|
S:CYS222
|
4.6
|
9.1
|
1.0
|
CA
|
S:GLY224
|
4.6
|
8.0
|
1.0
|
CD
|
S:PRO225
|
4.6
|
10.0
|
1.0
|
ND1
|
S:HIS188
|
4.7
|
10.6
|
1.0
|
SG
|
S:CYS216
|
4.7
|
10.5
|
1.0
|
SG
|
S:CYS191
|
4.7
|
9.8
|
1.0
|
N
|
S:TYR218
|
4.8
|
8.6
|
1.0
|
N
|
S:LEU217
|
4.8
|
10.2
|
1.0
|
CB
|
S:LEU217
|
4.8
|
7.8
|
1.0
|
C
|
S:CYS222
|
4.9
|
8.8
|
1.0
|
C
|
S:LEU217
|
5.0
|
8.4
|
1.0
|
|
Iron binding site 7 out
of 12 in 1wul
Go back to
Iron Binding Sites List in 1wul
Iron binding site 7 out
of 12 in the High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1002
b:9.8
occ:1.00
|
FE3
|
S:SF41002
|
0.0
|
9.8
|
1.0
|
S1
|
S:SF41002
|
2.3
|
9.5
|
1.0
|
S2
|
S:SF41002
|
2.3
|
10.3
|
1.0
|
SG
|
S:CYS191
|
2.3
|
9.8
|
1.0
|
S4
|
S:SF41002
|
2.3
|
9.3
|
1.0
|
FE1
|
S:SF41002
|
2.6
|
10.1
|
1.0
|
FE2
|
S:SF41002
|
2.7
|
9.2
|
1.0
|
FE4
|
S:SF41002
|
2.7
|
10.1
|
1.0
|
CB
|
S:CYS191
|
3.1
|
9.6
|
1.0
|
S3
|
S:SF41002
|
3.9
|
9.7
|
1.0
|
CB
|
S:ARG193
|
4.0
|
8.8
|
1.0
|
CG1
|
S:VAL243
|
4.4
|
10.8
|
1.0
|
ND1
|
S:HIS188
|
4.5
|
10.6
|
1.0
|
CA
|
S:CYS191
|
4.6
|
10.0
|
1.0
|
N
|
S:ARG193
|
4.6
|
10.5
|
1.0
|
CG2
|
S:VAL243
|
4.6
|
10.8
|
1.0
|
CG
|
S:ARG193
|
4.6
|
8.2
|
1.0
|
CA
|
S:ARG193
|
4.7
|
10.8
|
1.0
|
C
|
S:ARG193
|
4.7
|
11.0
|
1.0
|
N
|
S:LEU194
|
4.7
|
10.7
|
1.0
|
SG
|
S:CYS222
|
4.8
|
8.8
|
1.0
|
SG
|
S:CYS216
|
4.9
|
10.5
|
1.0
|
CD
|
S:ARG193
|
5.0
|
8.9
|
1.0
|
C
|
S:CYS191
|
5.0
|
10.5
|
1.0
|
|
Iron binding site 8 out
of 12 in 1wul
Go back to
Iron Binding Sites List in 1wul
Iron binding site 8 out
of 12 in the High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1002
b:10.1
occ:1.00
|
FE4
|
S:SF41002
|
0.0
|
10.1
|
1.0
|
S2
|
S:SF41002
|
2.3
|
10.3
|
1.0
|
SG
|
S:CYS216
|
2.3
|
10.5
|
1.0
|
S1
|
S:SF41002
|
2.3
|
9.5
|
1.0
|
S3
|
S:SF41002
|
2.3
|
9.7
|
1.0
|
FE1
|
S:SF41002
|
2.7
|
10.1
|
1.0
|
FE3
|
S:SF41002
|
2.7
|
9.8
|
1.0
|
FE2
|
S:SF41002
|
2.8
|
9.2
|
1.0
|
CB
|
S:CYS216
|
3.4
|
9.8
|
1.0
|
N
|
S:LEU217
|
3.7
|
10.2
|
1.0
|
CA
|
S:CYS216
|
3.9
|
10.2
|
1.0
|
S4
|
S:SF41002
|
4.0
|
9.3
|
1.0
|
N
|
S:TYR218
|
4.2
|
8.6
|
1.0
|
C
|
S:CYS216
|
4.2
|
9.4
|
1.0
|
CD2
|
S:PHE197
|
4.4
|
12.7
|
1.0
|
CB
|
S:PHE197
|
4.4
|
13.1
|
1.0
|
ND1
|
S:HIS188
|
4.4
|
10.6
|
1.0
|
CB
|
S:ARG193
|
4.5
|
8.8
|
1.0
|
CB
|
S:TYR218
|
4.6
|
10.4
|
1.0
|
CE1
|
S:HIS188
|
4.7
|
11.4
|
1.0
|
CA
|
S:LEU217
|
4.7
|
9.7
|
1.0
|
C
|
S:LEU217
|
4.8
|
8.4
|
1.0
|
CA
|
S:TYR218
|
4.8
|
9.4
|
1.0
|
CG
|
S:PHE197
|
4.8
|
13.5
|
1.0
|
O
|
S:ARG193
|
4.9
|
12.0
|
1.0
|
SG
|
S:CYS191
|
4.9
|
9.8
|
1.0
|
SG
|
S:CYS222
|
4.9
|
8.8
|
1.0
|
CB
|
S:CYS222
|
5.0
|
9.4
|
1.0
|
|
Iron binding site 9 out
of 12 in 1wul
Go back to
Iron Binding Sites List in 1wul
Iron binding site 9 out
of 12 in the High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1003
b:8.4
occ:1.00
|
FE1
|
S:F3S1003
|
0.0
|
8.4
|
1.0
|
S1
|
S:F3S1003
|
2.2
|
9.1
|
1.0
|
S2
|
S:F3S1003
|
2.3
|
8.4
|
1.0
|
S3
|
S:F3S1003
|
2.3
|
8.4
|
1.0
|
SG
|
S:CYS249
|
2.3
|
8.5
|
1.0
|
FE4
|
S:F3S1003
|
2.7
|
8.2
|
1.0
|
FE3
|
S:F3S1003
|
2.7
|
8.5
|
1.0
|
CB
|
S:CYS249
|
3.3
|
8.8
|
1.0
|
CA
|
S:CYS249
|
3.7
|
8.0
|
1.0
|
S4
|
S:F3S1003
|
3.9
|
8.4
|
1.0
|
N
|
S:ILE250
|
4.1
|
7.3
|
1.0
|
N
|
S:GLY251
|
4.2
|
7.1
|
1.0
|
C
|
S:CYS249
|
4.3
|
8.4
|
1.0
|
N
|
S:CYS252
|
4.5
|
7.8
|
1.0
|
CG2
|
S:THR227
|
4.6
|
9.7
|
1.0
|
CG2
|
S:VAL187
|
4.7
|
9.1
|
1.0
|
SG
|
S:CYS231
|
4.8
|
9.6
|
1.0
|
CA
|
S:GLY251
|
4.8
|
7.0
|
1.0
|
SG
|
S:CYS252
|
4.8
|
8.7
|
1.0
|
NE2
|
L:GLN237
|
4.9
|
10.1
|
1.0
|
N
|
S:CYS249
|
5.0
|
7.3
|
1.0
|
CG
|
S:PRO242
|
5.0
|
7.8
|
1.0
|
|
Iron binding site 10 out
of 12 in 1wul
Go back to
Iron Binding Sites List in 1wul
Iron binding site 10 out
of 12 in the High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of High Resolution Structure of the Reduced State of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1003
b:8.5
occ:1.00
|
FE3
|
S:F3S1003
|
0.0
|
8.5
|
1.0
|
S1
|
S:F3S1003
|
2.2
|
9.1
|
1.0
|
S4
|
S:F3S1003
|
2.2
|
8.4
|
1.0
|
S3
|
S:F3S1003
|
2.3
|
8.4
|
1.0
|
SG
|
S:CYS231
|
2.3
|
9.6
|
1.0
|
FE4
|
S:F3S1003
|
2.7
|
8.2
|
1.0
|
FE1
|
S:F3S1003
|
2.7
|
8.4
|
1.0
|
CB
|
S:CYS231
|
3.4
|
7.7
|
1.0
|
OD1
|
S:ASN229
|
3.9
|
10.6
|
1.0
|
S2
|
S:F3S1003
|
3.9
|
8.4
|
1.0
|
CE2
|
S:PHE236
|
4.4
|
7.4
|
1.0
|
O
|
S:HOH5016
|
4.4
|
8.8
|
1.0
|
CG
|
S:ASN229
|
4.5
|
8.9
|
1.0
|
CZ
|
S:PHE236
|
4.5
|
7.9
|
1.0
|
CG2
|
S:VAL187
|
4.6
|
9.1
|
1.0
|
CB
|
S:ASN229
|
4.6
|
7.5
|
1.0
|
CD
|
S:PRO242
|
4.7
|
8.2
|
1.0
|
SG
|
S:CYS252
|
4.7
|
8.7
|
1.0
|
CA
|
S:CYS231
|
4.8
|
9.1
|
1.0
|
SG
|
S:CYS249
|
4.8
|
8.5
|
1.0
|
CG
|
S:PRO242
|
4.8
|
7.8
|
1.0
|
|
Reference:
H.Ogata,
S.Hirota,
A.Nakahara,
H.Komori,
N.Shibata,
T.Kato,
K.Kano,
Y.Higuchi.
Activation Process of [Nife] Hydrogenase Elucidated By High-Resolution X-Ray Analyses: Conversion of the Ready to the Unready State Structure V. 13 1635 2005.
ISSN: ISSN 0969-2126
PubMed: 16271886
DOI: 10.1016/J.STR.2005.07.018
Page generated: Sat Aug 3 16:37:54 2024
|