Atomistry » Iron » PDB 1x89-1xvc » 1xj6
Atomistry »
  Iron »
    PDB 1x89-1xvc »
      1xj6 »

Iron in PDB 1xj6: Structure of Bjfixlh in the Unliganded Ferrous Form

Protein crystallography data

The structure of Structure of Bjfixlh in the Unliganded Ferrous Form, PDB code: 1xj6 was solved by J.Key, K.Moffat, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 81.100, 59.915, 59.574, 90.00, 111.51, 90.00
R / Rfree (%) 20.7 / 24.7

Other elements in 1xj6:

The structure of Structure of Bjfixlh in the Unliganded Ferrous Form also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Bjfixlh in the Unliganded Ferrous Form (pdb code 1xj6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Bjfixlh in the Unliganded Ferrous Form, PDB code: 1xj6:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1xj6

Go back to Iron Binding Sites List in 1xj6
Iron binding site 1 out of 2 in the Structure of Bjfixlh in the Unliganded Ferrous Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Bjfixlh in the Unliganded Ferrous Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe719

b:31.7
occ:1.00
FE A:HEM719 0.0 31.7 1.0
NB A:HEM719 2.0 29.4 1.0
NE2 A:HIS200 2.0 35.6 1.0
NA A:HEM719 2.0 30.9 1.0
ND A:HEM719 2.0 31.0 1.0
NC A:HEM719 2.0 27.3 1.0
CE1 A:HIS200 3.0 36.8 1.0
C1B A:HEM719 3.0 34.2 1.0
C4A A:HEM719 3.0 36.9 1.0
C4B A:HEM719 3.1 28.2 1.0
C1D A:HEM719 3.1 35.0 1.0
CD2 A:HIS200 3.1 34.0 1.0
C4C A:HEM719 3.1 32.5 1.0
C1A A:HEM719 3.1 35.6 1.0
C1C A:HEM719 3.1 33.4 1.0
C4D A:HEM719 3.1 34.2 1.0
CHB A:HEM719 3.4 31.6 1.0
CHD A:HEM719 3.4 30.1 1.0
CHC A:HEM719 3.5 31.5 1.0
CHA A:HEM719 3.5 33.7 1.0
CD2 A:LEU236 4.1 28.8 1.0
ND1 A:HIS200 4.2 34.4 1.0
CG A:HIS200 4.2 38.0 1.0
C2B A:HEM719 4.3 31.2 1.0
C3B A:HEM719 4.3 29.4 1.0
C3A A:HEM719 4.3 38.4 1.0
C2D A:HEM719 4.3 34.8 1.0
C2A A:HEM719 4.3 44.6 1.0
C3D A:HEM719 4.3 33.5 1.0
C3C A:HEM719 4.3 34.3 1.0
C2C A:HEM719 4.3 30.5 1.0
CD1 A:ILE238 4.4 33.5 1.0
CE A:MET192 4.8 39.6 1.0
CD1 A:ILE215 5.0 44.3 1.0

Iron binding site 2 out of 2 in 1xj6

Go back to Iron Binding Sites List in 1xj6
Iron binding site 2 out of 2 in the Structure of Bjfixlh in the Unliganded Ferrous Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Bjfixlh in the Unliganded Ferrous Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe719

b:36.9
occ:1.00
FE B:HEM719 0.0 36.9 1.0
NE2 B:HIS200 1.9 36.2 1.0
ND B:HEM719 2.0 40.7 1.0
NA B:HEM719 2.0 46.4 1.0
NB B:HEM719 2.0 42.7 1.0
NC B:HEM719 2.0 37.0 1.0
CE1 B:HIS200 3.0 40.2 1.0
CD2 B:HIS200 3.0 37.4 1.0
C1D B:HEM719 3.0 40.9 1.0
C4A B:HEM719 3.1 46.2 1.0
C1A B:HEM719 3.1 45.5 1.0
C4D B:HEM719 3.1 43.5 1.0
C1B B:HEM719 3.1 42.5 1.0
C4C B:HEM719 3.1 36.0 1.0
C4B B:HEM719 3.1 40.8 1.0
C1C B:HEM719 3.1 39.4 1.0
CHD B:HEM719 3.4 35.7 1.0
CHB B:HEM719 3.4 44.6 1.0
CHA B:HEM719 3.4 44.7 1.0
CHC B:HEM719 3.5 38.4 1.0
ND1 B:HIS200 4.1 39.0 1.0
CG B:HIS200 4.2 36.8 1.0
CD2 B:LEU236 4.2 41.6 1.0
C3A B:HEM719 4.3 44.6 1.0
C2D B:HEM719 4.3 38.8 1.0
C2A B:HEM719 4.3 49.5 1.0
C3D B:HEM719 4.3 43.6 1.0
C2B B:HEM719 4.3 40.0 1.0
CD1 B:ILE215 4.3 72.5 1.0
C3C B:HEM719 4.3 41.0 1.0
C3B B:HEM719 4.3 40.0 1.0
C2C B:HEM719 4.3 33.9 1.0
CE B:MET192 4.8 41.6 1.0

Reference:

J.Key, K.Moffat. Crystal Structures of Deoxy and Co-Bound Bjfixlh Reveal Details of Ligand Recognition and Signaling Biochemistry V. 44 4627 2005.
ISSN: ISSN 0006-2960
PubMed: 15779889
DOI: 10.1021/BI047942R
Page generated: Sun Dec 13 14:35:51 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy