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Iron in PDB 1xlp: Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida

Enzymatic activity of Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida

All present enzymatic activity of Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida:
1.9.3.2;

Protein crystallography data

The structure of Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida, PDB code: 1xlp was solved by I.F.Sevrioukova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.36 / 2.00
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 66.220, 66.220, 151.751, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 22.1

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida (pdb code 1xlp). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida, PDB code: 1xlp:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 1xlp

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Iron binding site 1 out of 6 in the Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe107

b:18.4
occ:1.00
 FE1 A:FES107 0.0 18.4 1.0
S1 A:FES107 2.2 18.4 1.0
S2 A:FES107 2.2 18.3 1.0
SG A:CYS39 2.3 18.3 1.0
SG A:CYS45 2.3 18.5 1.0
FE2 A:FES107 2.7 18.4 1.0
CB A:CYS39 3.4 18.6 1.0
CB A:CYS45 3.6 18.8 1.0
N A:CYS45 3.6 18.9 1.0
N A:CYS39 3.8 18.6 1.0
CA A:CYS45 4.0 18.8 1.0
O A:CYS45 4.0 18.8 1.0
CA A:CYS39 4.0 18.7 1.0
C A:CYS45 4.1 18.8 1.0
N A:SER44 4.2 19.1 1.0
N A:GLY41 4.2 18.9 1.0
N A:GLY40 4.4 18.8 1.0
SG A:CYS86 4.5 18.0 1.0
C A:CYS39 4.5 18.7 1.0
SG A:CYS48 4.5 18.2 1.0
N A:ALA43 4.6 19.1 1.0
C A:SER44 4.6 19.0 1.0
OG1 A:THR47 4.6 18.5 1.0
CA A:GLY41 4.6 19.0 1.0
C A:GLY37 4.7 18.7 1.0
N A:SER42 4.7 19.1 1.0
N A:ASP38 4.7 18.7 1.0
CA A:ALA43 4.8 19.1 1.0
CA A:GLY37 4.8 18.7 1.0
CA A:SER44 4.9 19.1 1.0
N A:ALA46 4.9 18.8 1.0
C A:ASP38 4.9 18.7 1.0
C A:ALA43 4.9 19.1 1.0
O A:GLY37 5.0 18.7 1.0
N A:THR47 5.0 18.5 1.0

Iron binding site 2 out of 6 in 1xlp

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Iron binding site 2 out of 6 in the Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe107

b:18.4
occ:1.00
 FE2 A:FES107 0.0 18.4 1.0
S1 A:FES107 2.2 18.4 1.0
SG A:CYS48 2.3 18.2 1.0
S2 A:FES107 2.3 18.3 1.0
SG A:CYS86 2.3 18.0 1.0
FE1 A:FES107 2.7 18.4 1.0
CB A:CYS86 3.1 18.3 1.0
CB A:CYS48 3.4 18.2 1.0
CB A:LEU84 4.2 18.4 1.0
N A:CYS86 4.2 18.3 1.0
CA A:CYS86 4.2 18.4 1.0
CA A:GLY41 4.4 19.0 1.0
SG A:CYS39 4.4 18.3 1.0
SG A:CYS45 4.5 18.5 1.0
CA A:CYS48 4.6 18.2 1.0
N A:CYS48 4.7 18.3 1.0
N A:GLY41 4.7 18.9 1.0
N A:ALA43 4.7 19.1 1.0
CD1 A:LEU84 4.8 18.4 1.0
CG A:MET24 4.8 19.1 1.0
O A:CYS45 4.8 18.8 1.0
CA A:ALA43 4.8 19.1 1.0
CA A:LEU84 4.9 18.5 1.0
C A:LEU84 4.9 18.4 1.0
CG A:LEU84 5.0 18.4 1.0
C A:GLY41 5.0 19.1 1.0

Iron binding site 3 out of 6 in 1xlp

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Iron binding site 3 out of 6 in the Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe107

b:21.0
occ:1.00
 FE1 B:FES107 0.0 21.0 1.0
S1 B:FES107 2.2 20.8 1.0
S2 B:FES107 2.2 20.6 1.0
SG B:CYS39 2.3 22.0 1.0
SG B:CYS45 2.3 21.3 1.0
FE2 B:FES107 2.7 20.6 1.0
CB B:CYS39 3.3 23.0 1.0
CB B:CYS45 3.5 21.3 1.0
N B:CYS45 3.7 21.5 1.0
N B:CYS39 3.8 23.6 1.0
CA B:CYS45 4.0 21.4 1.0
CA B:CYS39 4.0 23.2 1.0
O B:CYS45 4.0 21.2 1.0
C B:CYS45 4.1 21.2 1.0
N B:GLY41 4.1 23.0 1.0
N B:SER44 4.2 22.0 1.0
SG B:CYS86 4.4 20.0 1.0
C B:CYS39 4.4 23.2 1.0
N B:GLY40 4.5 23.2 1.0
N B:ALA43 4.5 22.4 1.0
CA B:GLY41 4.5 22.9 1.0
SG B:CYS48 4.6 19.9 1.0
C B:SER44 4.7 21.7 1.0
N B:SER42 4.7 22.6 1.0
CA B:ALA43 4.7 22.2 1.0
OG1 B:THR47 4.7 20.1 1.0
N B:ALA46 4.8 21.0 1.0
N B:ASP38 4.8 24.3 1.0
C B:GLY37 4.8 24.6 1.0
CA B:GLY37 4.9 24.8 1.0
C B:ASP38 4.9 23.9 1.0
C B:ALA43 5.0 22.1 1.0
C B:GLY41 5.0 22.8 1.0

Iron binding site 4 out of 6 in 1xlp

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Iron binding site 4 out of 6 in the Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe107

b:20.6
occ:1.00
 FE2 B:FES107 0.0 20.6 1.0
S1 B:FES107 2.2 20.8 1.0
SG B:CYS86 2.3 20.0 1.0
S2 B:FES107 2.3 20.6 1.0
SG B:CYS48 2.3 19.9 1.0
FE1 B:FES107 2.7 21.0 1.0
CB B:CYS86 3.1 19.7 1.0
CB B:CYS48 3.4 19.7 1.0
N B:CYS86 4.2 19.5 1.0
CB B:LEU84 4.2 19.4 1.0
CA B:CYS86 4.2 19.7 1.0
CA B:GLY41 4.3 22.9 1.0
SG B:CYS39 4.5 22.0 1.0
SG B:CYS45 4.5 21.3 1.0
CA B:CYS48 4.6 19.6 1.0
N B:GLY41 4.6 23.0 1.0
N B:CYS48 4.7 19.8 1.0
N B:ALA43 4.8 22.4 1.0
O B:CYS45 4.9 21.2 1.0
CD1 B:LEU84 4.9 19.4 1.0
C B:GLY41 4.9 22.8 1.0
CA B:ALA43 4.9 22.2 1.0
CG B:MET24 4.9 20.1 1.0
C B:LEU84 5.0 19.4 1.0
CA B:LEU84 5.0 19.4 1.0

Iron binding site 5 out of 6 in 1xlp

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Iron binding site 5 out of 6 in the Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe107

b:18.4
occ:1.00
 FE1 C:FES107 0.0 18.4 1.0
S1 C:FES107 2.2 18.3 1.0
S2 C:FES107 2.2 18.3 1.0
SG C:CYS39 2.5 19.1 1.0
SG C:CYS45 2.5 18.5 1.0
FE2 C:FES107 2.7 18.3 1.0
CB C:CYS39 3.3 19.2 1.0
CB C:CYS45 3.6 18.5 1.0
N C:CYS39 3.8 19.3 1.0
N C:CYS45 3.8 18.6 1.0
CA C:CYS39 4.0 19.2 1.0
CA C:CYS45 4.1 18.6 1.0
O C:CYS45 4.1 18.6 1.0
C C:CYS45 4.1 18.6 1.0
N C:GLY41 4.2 18.7 1.0
N C:SER44 4.2 18.6 1.0
N C:ALA43 4.5 18.6 1.0
N C:GLY40 4.5 19.0 1.0
C C:CYS39 4.5 19.1 1.0
SG C:CYS86 4.5 17.0 1.0
CA C:GLY41 4.6 18.6 1.0
SG C:CYS48 4.6 18.4 1.0
CA C:ALA43 4.7 18.6 1.0
C C:SER44 4.7 18.6 1.0
N C:ALA46 4.7 18.6 1.0
OG1 C:THR47 4.8 18.5 1.0
N C:SER42 4.8 18.6 1.0
C C:GLY37 4.8 19.6 1.0
N C:ASP38 4.8 19.6 1.0
CA C:GLY37 4.9 19.7 1.0
C C:ALA43 4.9 18.6 1.0
C C:ASP38 4.9 19.5 1.0
N C:THR47 5.0 18.5 1.0

Iron binding site 6 out of 6 in 1xlp

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Iron binding site 6 out of 6 in the Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Oxidized C73S Putidaredoxin From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe107

b:18.3
occ:1.00
 FE2 C:FES107 0.0 18.3 1.0
S1 C:FES107 2.2 18.3 1.0
S2 C:FES107 2.2 18.3 1.0
SG C:CYS48 2.4 18.4 1.0
SG C:CYS86 2.4 17.0 1.0
FE1 C:FES107 2.7 18.4 1.0
CB C:CYS86 3.2 17.2 1.0
CB C:CYS48 3.4 18.3 1.0
N C:CYS86 4.3 17.3 1.0
CB C:LEU84 4.3 17.4 1.0
CA C:GLY41 4.3 18.6 1.0
CA C:CYS86 4.3 17.3 1.0
SG C:CYS39 4.5 19.1 1.0
SG C:CYS45 4.6 18.5 1.0
N C:CYS48 4.6 18.4 1.0
CA C:CYS48 4.6 18.4 1.0
N C:GLY41 4.7 18.7 1.0
N C:ALA43 4.7 18.6 1.0
CA C:ALA43 4.8 18.6 1.0
C C:GLY41 4.9 18.6 1.0
CD1 C:LEU84 4.9 17.4 1.0
O C:CYS45 5.0 18.6 1.0

Reference:

I.F.Sevrioukova, I.F.Sevrioukova. N/A N/A.
ISSN: ISSN 0022-2836
PubMed: 15755454
DOI: 10.1016/J.JMB.2005.01.047
Page generated: Sat Aug 3 16:57:29 2024

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